Wall clock time and date at job start Mon Mar 30 2020 03:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30768 * 1 3 3 Si 1.86798 * 120.00289 * 2 1 4 4 H 1.48501 * 109.47180 * 270.00100 * 3 2 1 5 5 H 1.48501 * 109.47066 * 29.99982 * 3 2 1 6 6 H 1.48497 * 109.47411 * 150.00210 * 3 2 1 7 7 C 1.40076 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00436 * 169.95614 * 7 2 1 9 9 C 1.40914 * 119.99457 * 349.95076 * 7 2 1 10 10 C 1.40786 * 120.75934 * 328.60416 * 9 7 2 11 11 N 1.31353 * 120.49305 * 180.02562 * 10 9 7 12 12 C 1.32274 * 122.32159 * 359.72914 * 11 10 9 13 13 C 1.38019 * 121.49670 * 0.54267 * 12 11 10 14 14 C 1.39539 * 119.27985 * 359.47370 * 13 12 11 15 15 C 1.47874 * 121.03611 * 180.23244 * 14 13 12 16 16 C 1.39424 * 124.12441 * 354.02628 * 15 14 13 17 17 N 1.30112 * 112.13003 * 179.82399 * 16 15 14 18 18 S 1.55924 * 108.75109 * 0.42224 * 17 16 15 19 19 N 1.31465 * 124.11758 * 174.32310 * 15 14 13 20 20 H 0.97004 * 119.99826 * 359.97438 * 1 2 3 21 21 H 1.07995 * 119.75621 * 0.04087 * 10 9 7 22 22 H 1.08000 * 119.25010 * 180.29466 * 12 11 10 23 23 H 1.08005 * 120.36182 * 179.75397 * 13 12 11 24 24 H 1.08001 * 123.93467 * 359.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 2.4893 2.0464 -1.4001 5 1 1.4392 2.6526 0.7000 6 1 3.5393 1.4401 0.7000 7 6 2.0081 -1.2131 -0.0005 8 1 3.0757 -1.2202 -0.1637 9 6 1.3197 -2.4241 0.2119 10 6 0.1757 -2.4679 1.0313 11 7 -0.4617 -3.5997 1.2261 12 6 -0.0734 -4.7350 0.6694 13 6 1.0392 -4.7951 -0.1452 14 6 1.7650 -3.6301 -0.3962 15 6 2.9600 -3.6490 -1.2670 16 6 3.5227 -4.8089 -1.7977 17 7 4.5653 -4.5555 -2.5337 18 16 4.8112 -3.0158 -2.5414 19 7 3.6246 -2.5745 -1.6305 20 1 -0.4850 0.8401 0.0004 21 1 -0.1806 -1.5641 1.5031 22 1 -0.6374 -5.6362 0.8598 23 1 1.3422 -5.7329 -0.5872 24 1 3.1366 -5.8019 -1.6207 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259674837.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:09 Heat of formation + Delta-G solvation = 65.099636 kcal Electronic energy + Delta-G solvation = -13508.156647 eV Core-core repulsion = 11126.498100 eV Total energy + Delta-G solvation = -2381.658546 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.57972 -39.82501 -35.93573 -34.50877 -32.77454 -31.67142 -28.12610 -26.66194 -24.33720 -23.11362 -21.46018 -19.91694 -19.31669 -17.59704 -17.01173 -16.44524 -16.12980 -16.07252 -15.55036 -14.45173 -14.22459 -14.10527 -13.30385 -13.13592 -12.90984 -12.76376 -12.31824 -12.03347 -11.90511 -11.70170 -11.30826 -11.17176 -10.74443 -9.89362 -9.42836 -9.22747 -8.75265 -6.38824 -0.22753 0.54908 0.81898 0.86440 1.07936 1.37293 1.48554 1.51801 1.85807 2.17849 2.76592 3.64912 3.73061 4.22025 4.24255 4.39125 4.60518 4.76545 4.96867 5.04184 5.23553 5.36199 5.54702 5.80837 6.04528 6.18014 6.51159 6.72958 6.81421 7.77090 8.22739 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.019578 B = 0.013243 C = 0.008063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.850018 B = 2113.832672 C = 3471.871794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.033 3.967 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.263 1.263 6 H -0.258 1.258 7 C -0.428 4.428 8 H 0.102 0.898 9 C 0.053 3.947 10 C 0.042 3.958 11 N -0.494 5.494 12 C -0.054 4.054 13 C -0.099 4.099 14 C -0.143 4.143 15 C 0.126 3.874 16 C 0.039 3.961 17 N -0.585 5.585 18 S 0.641 5.359 19 N -0.581 5.581 20 H 0.294 0.706 21 H 0.134 0.866 22 H 0.158 0.842 23 H 0.153 0.847 24 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.497 -3.214 -3.324 7.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.184 4.184 3 Si 0.803 3.197 4 H -0.190 1.190 5 H -0.187 1.187 6 H -0.181 1.181 7 C -0.459 4.459 8 H 0.119 0.881 9 C 0.047 3.953 10 C -0.126 4.126 11 N -0.203 5.203 12 C -0.204 4.204 13 C -0.121 4.121 14 C -0.156 4.156 15 C -0.043 4.043 16 C -0.158 4.158 17 N -0.425 5.425 18 S 0.687 5.313 19 N -0.424 5.424 20 H 0.104 0.896 21 H 0.151 0.849 22 H 0.176 0.824 23 H 0.171 0.829 24 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 7.190 -1.998 -3.886 8.414 hybrid contribution -0.617 -0.115 0.303 0.697 sum 6.573 -2.113 -3.583 7.778 Atomic orbital electron populations 1.69776 1.08974 1.31259 1.34226 1.26889 0.95499 1.04695 0.91321 0.85188 0.79211 0.75869 0.79472 1.19013 1.18692 1.18131 1.20134 0.97173 0.90264 1.38366 0.88059 1.18808 0.92933 0.93584 0.90012 1.22828 0.95958 0.94467 0.99306 1.67075 1.31091 0.99828 1.22334 1.22263 0.99096 0.95828 1.03204 1.21910 0.95062 0.97334 0.97769 1.18292 0.97625 0.95591 1.04052 1.21054 0.97113 0.87069 0.99076 1.24080 0.92639 1.02223 0.96838 1.72110 1.22204 1.23527 1.24689 1.78587 1.24785 0.92239 1.35677 1.72989 1.14320 1.34410 1.20670 0.89553 0.84890 0.82441 0.82930 0.75426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.35 11.01 21.85 0.24 -41.11 14 2 C 0.03 1.59 5.26 85.30 0.45 2.03 14 3 Si 0.98 37.61 29.57 68.60 2.03 39.64 14 4 H -0.27 -9.99 7.11 99.48 0.71 -9.28 14 5 H -0.26 -9.44 7.11 99.48 0.71 -8.73 14 6 H -0.26 -9.71 7.11 99.48 0.71 -9.00 14 7 C -0.43 -22.20 7.91 23.37 0.18 -22.02 14 8 H 0.10 5.23 5.82 -2.91 -0.02 5.21 14 9 C 0.05 2.78 5.55 -21.01 -0.12 2.66 14 10 C 0.04 2.21 9.84 85.39 0.84 3.05 14 11 N -0.49 -24.38 10.32 -193.98 -2.00 -26.38 14 12 C -0.05 -2.23 11.15 84.57 0.94 -1.29 14 13 C -0.10 -3.85 9.59 22.53 0.22 -3.63 14 14 C -0.14 -6.53 5.97 -19.43 -0.12 -6.64 14 15 C 0.13 5.17 6.68 42.04 0.28 5.45 14 16 C 0.04 1.28 10.99 85.23 0.94 2.22 14 17 N -0.59 -19.00 11.41 -92.33 -1.05 -20.05 14 18 S 0.64 20.51 23.69 -56.49 -1.34 19.17 14 19 N -0.58 -24.31 8.29 -80.44 -0.67 -24.98 14 20 H 0.29 13.42 8.30 -92.71 -0.77 12.65 14 21 H 0.13 7.31 6.42 -2.91 -0.02 7.29 14 22 H 0.16 5.35 8.06 -2.91 -0.02 5.32 14 23 H 0.15 4.34 6.90 -2.91 -0.02 4.32 14 24 H 0.23 5.55 7.08 -2.91 -0.02 5.53 14 Total: -1.00 -60.65 231.11 2.08 -58.57 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 1.25 Total: 13.31 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 3.62 Total: -18.17 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -3.48 Total: -112.52 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.64 kcal Atomic # 16 Polarization: 20.51 SS G_CDS: -1.34 Total: 19.17 kcal Total: -60.65 2.08 -58.57 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259674837.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.666 kcal (2) G-P(sol) polarization free energy of solvation -60.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds