Wall clock time and date at job start Mon Mar 30 2020 03:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29866 * 1 3 3 Si 1.86800 * 120.00112 * 2 1 4 4 H 1.48504 * 109.46700 * 269.99639 * 3 2 1 5 5 H 1.48496 * 109.47527 * 29.99508 * 3 2 1 6 6 H 1.48495 * 109.46903 * 149.99950 * 3 2 1 7 7 C 1.41705 * 119.99513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99724 * 170.49563 * 7 2 1 9 9 C 1.38789 * 120.00303 * 350.48737 * 7 2 1 10 10 C 1.42293 * 121.01590 * 326.69606 * 9 7 2 11 11 C 1.38083 * 119.03545 * 179.97438 * 10 9 7 12 12 C 1.37651 * 121.34176 * 0.03382 * 11 10 9 13 13 N 1.35742 * 121.95377 * 359.96285 * 12 11 10 14 14 C 1.36506 * 133.02198 * 179.97438 * 13 12 11 15 15 N 1.30641 * 108.84774 * 180.02562 * 14 13 12 16 16 C 1.33858 * 109.79135 * 0.02562 * 15 14 13 17 17 N 1.48033 * 126.03460 * 180.26639 * 16 15 14 18 18 O 1.31700 * 119.99937 * 146.69629 * 17 16 15 19 19 O 1.31705 * 120.00214 * 326.69360 * 17 16 15 20 20 C 1.36062 * 107.92170 * 359.97438 * 16 15 14 21 21 H 0.97003 * 119.99436 * 0.02562 * 1 2 3 22 22 H 1.08006 * 120.48168 * 359.94589 * 10 9 7 23 23 H 1.08006 * 119.33459 * 180.02562 * 11 10 9 24 24 H 1.08000 * 119.02800 * 179.97438 * 12 11 10 25 25 H 1.08004 * 125.57343 * 359.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2987 0.0000 0.0000 3 14 2.2327 1.6177 0.0000 4 1 2.4802 2.0463 -1.4002 5 1 1.4302 2.6527 0.6999 6 1 3.5302 1.4401 0.7000 7 6 2.0071 -1.2273 0.0005 8 1 3.0760 -1.2338 -0.1539 9 6 1.3274 -2.4208 0.1997 10 6 0.1876 -2.4826 1.0493 11 6 -0.4580 -3.6915 1.2178 12 6 -0.0203 -4.8316 0.5825 13 7 1.0611 -4.8266 -0.2379 14 6 1.6814 -5.7997 -0.9671 15 7 2.6965 -5.2721 -1.5979 16 6 2.7783 -3.9667 -1.3129 17 7 3.7904 -3.0226 -1.8379 18 8 3.4656 -1.7659 -2.0607 19 8 5.0157 -3.4393 -2.0820 20 6 1.7630 -3.6598 -0.4608 21 1 -0.4849 0.8401 -0.0004 22 1 -0.1671 -1.5968 1.5554 23 1 -1.3239 -3.7438 1.8612 24 1 -0.5532 -5.7574 0.7413 25 1 1.3824 -6.8365 -1.0141 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259811155.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:35 Heat of formation + Delta-G solvation = 105.291847 kcal Electronic energy + Delta-G solvation = -15935.841438 eV Core-core repulsion = 13113.172886 eV Total energy + Delta-G solvation = -2822.668552 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.05398 -37.64447 -36.50257 -34.59328 -33.29855 -32.01198 -30.28107 -28.58948 -26.24696 -24.79638 -22.53338 -21.77599 -20.54717 -18.34379 -17.40019 -17.06635 -16.19245 -15.66542 -15.33293 -15.12794 -14.47042 -14.26545 -13.59154 -13.40042 -12.28756 -12.10238 -11.52598 -11.24500 -10.94888 -10.77606 -10.49274 -10.33717 -10.30385 -9.95332 -9.90564 -9.47127 -9.25402 -8.61737 -7.44650 -7.05258 -4.87074 0.55871 1.86320 2.00895 2.20693 2.85321 2.89622 2.93997 3.37570 3.42212 3.63333 3.97708 4.77867 4.97013 5.36791 5.44633 5.53095 6.00314 6.13815 6.25956 6.46984 6.75894 7.00629 7.09825 7.28996 7.47782 7.68774 7.85657 7.93636 8.05133 8.14732 8.29478 9.47654 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.022706 B = 0.013177 C = 0.008603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.844123 B = 2124.405849 C = 3253.767349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.074 3.926 3 Si 0.929 3.071 4 H -0.254 1.254 5 H -0.271 1.271 6 H -0.251 1.251 7 C -0.359 4.359 8 H 0.104 0.896 9 C 0.117 3.883 10 C -0.211 4.211 11 C -0.057 4.057 12 C -0.158 4.158 13 N -0.296 5.296 14 C 0.127 3.873 15 N -0.426 5.426 16 C 0.052 3.948 17 N 0.037 4.963 18 O -0.155 6.155 19 O -0.227 6.227 20 C 0.057 3.943 21 H 0.298 0.702 22 H 0.131 0.869 23 H 0.120 0.880 24 H 0.141 0.859 25 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.563 -1.271 3.396 5.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.153 4.153 3 Si 0.750 3.250 4 H -0.178 1.178 5 H -0.196 1.196 6 H -0.174 1.174 7 C -0.385 4.385 8 H 0.122 0.878 9 C 0.111 3.889 10 C -0.234 4.234 11 C -0.077 4.077 12 C -0.283 4.283 13 N 0.038 4.962 14 C -0.150 4.150 15 N -0.145 5.145 16 C -0.165 4.165 17 N 0.506 4.494 18 O -0.348 6.348 19 O -0.404 6.404 20 C -0.066 4.066 21 H 0.110 0.890 22 H 0.149 0.851 23 H 0.138 0.862 24 H 0.158 0.842 25 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -3.553 -2.122 2.995 5.108 hybrid contribution -0.114 1.035 0.188 1.058 sum -3.667 -1.087 3.183 4.976 Atomic orbital electron populations 1.69320 1.08603 1.31662 1.26353 1.26411 0.94941 1.02601 0.91395 0.85912 0.80558 0.77783 0.80743 1.17840 1.19561 1.17408 1.20007 0.97325 0.89465 1.31658 0.87786 1.18072 0.93015 0.87590 0.90248 1.21339 1.01142 0.97069 1.03831 1.20461 0.98119 0.91824 0.97330 1.20779 0.97255 1.00934 1.09349 1.42397 1.18586 1.07940 1.27277 1.24721 0.94565 0.96128 0.99560 1.69247 1.17858 1.04887 1.22495 1.18554 0.97235 0.88760 1.11938 1.48869 1.01486 1.01958 0.97065 1.96256 1.87213 0.95917 1.55373 1.96186 1.00905 1.83264 1.60070 1.19859 0.95374 0.89333 1.02024 0.88985 0.85105 0.86174 0.84180 0.76568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -16.17 11.12 55.64 0.62 -15.55 15 2 C 0.07 1.62 5.29 -17.06 -0.09 1.53 15 3 Si 0.93 16.93 29.58 -169.99 -5.03 11.90 15 4 H -0.25 -4.73 7.11 56.52 0.40 -4.32 15 5 H -0.27 -4.60 7.11 56.52 0.40 -4.20 15 6 H -0.25 -4.62 7.11 56.52 0.40 -4.22 15 7 C -0.36 -8.71 7.16 -38.06 -0.27 -8.98 15 8 H 0.10 2.61 5.83 -52.49 -0.31 2.31 15 9 C 0.12 2.84 5.65 -104.59 -0.59 2.25 15 10 C -0.21 -4.64 8.76 -38.08 -0.33 -4.98 15 11 C -0.06 -1.08 9.94 -39.85 -0.40 -1.47 15 12 C -0.16 -2.94 10.97 -16.04 -0.18 -3.11 15 13 N -0.30 -6.23 2.94 -60.37 -0.18 -6.40 15 14 C 0.13 2.43 12.82 -88.91 -1.14 1.29 15 15 N -0.43 -9.86 11.21 -11.05 -0.12 -9.98 15 16 C 0.05 1.32 8.00 -145.28 -1.16 0.16 15 17 N 0.04 0.98 4.85 32.82 0.16 1.14 15 18 O -0.16 -4.04 15.93 -31.57 -0.50 -4.55 15 19 O -0.23 -5.92 19.97 -31.57 -0.63 -6.55 15 20 C 0.06 1.40 6.77 -82.33 -0.56 0.84 15 21 H 0.30 5.74 8.27 -40.82 -0.34 5.40 15 22 H 0.13 2.86 6.65 -52.48 -0.35 2.51 15 23 H 0.12 1.84 8.06 -52.48 -0.42 1.42 15 24 H 0.14 2.05 8.06 -52.49 -0.42 1.63 15 25 H 0.22 2.91 8.06 -52.48 -0.42 2.49 15 LS Contribution 237.21 15.07 3.57 3.57 Total: -1.00 -28.00 237.21 -7.89 -35.88 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -1.06 Total: 3.01 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -4.72 Total: -12.47 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 0.48 Total: -30.80 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -1.13 Total: -11.10 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -28.00 -7.89 -35.88 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259811155.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.174 kcal (2) G-P(sol) polarization free energy of solvation -27.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds