Wall clock time and date at job start Mon Mar 30 2020 03:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29866 * 1 3 3 Si 1.86800 * 120.00112 * 2 1 4 4 H 1.48504 * 109.46700 * 269.99639 * 3 2 1 5 5 H 1.48496 * 109.47527 * 29.99508 * 3 2 1 6 6 H 1.48495 * 109.46903 * 149.99950 * 3 2 1 7 7 C 1.41705 * 119.99513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99724 * 170.49563 * 7 2 1 9 9 C 1.38789 * 120.00303 * 350.48737 * 7 2 1 10 10 C 1.42293 * 121.01590 * 326.69606 * 9 7 2 11 11 C 1.38083 * 119.03545 * 179.97438 * 10 9 7 12 12 C 1.37651 * 121.34176 * 0.03382 * 11 10 9 13 13 N 1.35742 * 121.95377 * 359.96285 * 12 11 10 14 14 C 1.36506 * 133.02198 * 179.97438 * 13 12 11 15 15 N 1.30641 * 108.84774 * 180.02562 * 14 13 12 16 16 C 1.33858 * 109.79135 * 0.02562 * 15 14 13 17 17 N 1.48033 * 126.03460 * 180.26639 * 16 15 14 18 18 O 1.31700 * 119.99937 * 146.69629 * 17 16 15 19 19 O 1.31705 * 120.00214 * 326.69360 * 17 16 15 20 20 C 1.36062 * 107.92170 * 359.97438 * 16 15 14 21 21 H 0.97003 * 119.99436 * 0.02562 * 1 2 3 22 22 H 1.08006 * 120.48168 * 359.94589 * 10 9 7 23 23 H 1.08006 * 119.33459 * 180.02562 * 11 10 9 24 24 H 1.08000 * 119.02800 * 179.97438 * 12 11 10 25 25 H 1.08004 * 125.57343 * 359.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2987 0.0000 0.0000 3 14 2.2327 1.6177 0.0000 4 1 2.4802 2.0463 -1.4002 5 1 1.4302 2.6527 0.6999 6 1 3.5302 1.4401 0.7000 7 6 2.0071 -1.2273 0.0005 8 1 3.0760 -1.2338 -0.1539 9 6 1.3274 -2.4208 0.1997 10 6 0.1876 -2.4826 1.0493 11 6 -0.4580 -3.6915 1.2178 12 6 -0.0203 -4.8316 0.5825 13 7 1.0611 -4.8266 -0.2379 14 6 1.6814 -5.7997 -0.9671 15 7 2.6965 -5.2721 -1.5979 16 6 2.7783 -3.9667 -1.3129 17 7 3.7904 -3.0226 -1.8379 18 8 3.4656 -1.7659 -2.0607 19 8 5.0157 -3.4393 -2.0820 20 6 1.7630 -3.6598 -0.4608 21 1 -0.4849 0.8401 -0.0004 22 1 -0.1671 -1.5968 1.5554 23 1 -1.3239 -3.7438 1.8612 24 1 -0.5532 -5.7574 0.7413 25 1 1.3824 -6.8365 -1.0141 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259811155.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:35 Heat of formation + Delta-G solvation = 90.587910 kcal Electronic energy + Delta-G solvation = -15936.479049 eV Core-core repulsion = 13113.172886 eV Total energy + Delta-G solvation = -2823.306163 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.73648 -39.46053 -38.18691 -36.24237 -35.15649 -33.69944 -31.93810 -30.31461 -27.97543 -26.53749 -24.19534 -23.39927 -22.29256 -19.99565 -19.13634 -18.88624 -17.93314 -17.30401 -17.05045 -16.72464 -16.16305 -15.89398 -15.14035 -14.95626 -13.90557 -13.74469 -13.07772 -12.90454 -12.51145 -12.42314 -12.23753 -12.15082 -11.95558 -11.70017 -11.67720 -11.27967 -10.94066 -10.28252 -9.04815 -8.71132 -6.54960 -1.39406 0.22479 0.27974 0.50162 1.35803 1.38997 1.47265 1.73479 1.80417 2.15489 2.37008 3.08991 3.40813 3.74701 3.83675 3.96239 4.43341 4.60760 4.64945 4.89112 5.06243 5.36125 5.37834 5.61283 5.75709 5.92431 6.15761 6.27730 6.42790 6.47099 6.59146 7.92430 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.022706 B = 0.013177 C = 0.008603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.844123 B = 2124.405849 C = 3253.767349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.050 3.950 3 Si 0.978 3.022 4 H -0.265 1.265 5 H -0.242 1.242 6 H -0.263 1.263 7 C -0.403 4.403 8 H 0.076 0.924 9 C 0.083 3.917 10 C -0.188 4.188 11 C -0.074 4.074 12 C -0.093 4.093 13 N -0.308 5.308 14 C 0.173 3.827 15 N -0.455 5.455 16 C 0.012 3.988 17 N 0.042 4.958 18 O -0.198 6.198 19 O -0.285 6.285 20 C 0.022 3.978 21 H 0.309 0.691 22 H 0.129 0.871 23 H 0.172 0.828 24 H 0.206 0.794 25 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.317 -3.887 5.380 9.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.174 4.174 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.165 1.165 6 H -0.187 1.187 7 C -0.430 4.430 8 H 0.094 0.906 9 C 0.078 3.922 10 C -0.213 4.213 11 C -0.093 4.093 12 C -0.220 4.220 13 N 0.025 4.975 14 C -0.106 4.106 15 N -0.173 5.173 16 C -0.203 4.203 17 N 0.491 4.509 18 O -0.379 6.379 19 O -0.447 6.447 20 C -0.100 4.100 21 H 0.122 0.878 22 H 0.147 0.853 23 H 0.189 0.811 24 H 0.222 0.778 25 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -7.129 -4.650 4.883 9.813 hybrid contribution 0.535 1.377 -0.140 1.484 sum -6.595 -3.273 4.744 8.758 Atomic orbital electron populations 1.69247 1.08922 1.32902 1.27448 1.26877 0.95641 1.04072 0.90856 0.85238 0.79443 0.75530 0.80072 1.19003 1.16487 1.18656 1.19895 0.96583 0.91092 1.35381 0.90576 1.18398 0.94447 0.87967 0.91412 1.21661 0.99505 0.98677 1.01431 1.21096 0.99490 0.90514 0.98236 1.22116 0.93579 1.03060 1.03286 1.42881 1.19119 1.07364 1.28107 1.26195 0.91610 0.97563 0.95219 1.69229 1.19850 1.04284 1.23937 1.18762 0.98164 0.89429 1.13994 1.48967 1.01695 1.02120 0.98156 1.96204 1.87483 0.97123 1.57088 1.96120 1.02049 1.83330 1.63234 1.19887 0.96600 0.90807 1.02738 0.87823 0.85283 0.81097 0.77759 0.69937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -33.52 11.12 22.13 0.25 -33.27 15 2 C 0.05 2.27 5.29 85.84 0.45 2.72 15 3 Si 0.98 36.18 29.58 68.60 2.03 38.21 15 4 H -0.27 -10.14 7.11 99.48 0.71 -9.44 15 5 H -0.24 -7.70 7.11 99.48 0.71 -6.99 15 6 H -0.26 -10.05 7.11 99.48 0.71 -9.34 15 7 C -0.40 -20.68 7.16 23.26 0.17 -20.51 15 8 H 0.08 4.23 5.83 -2.91 -0.02 4.21 15 9 C 0.08 4.08 5.65 -19.84 -0.11 3.96 15 10 C -0.19 -7.80 8.76 23.24 0.20 -7.59 15 11 C -0.07 -2.31 9.94 22.09 0.22 -2.09 15 12 C -0.09 -2.71 10.97 83.95 0.92 -1.79 15 13 N -0.31 -11.43 2.94 -344.92 -1.01 -12.45 15 14 C 0.17 5.73 12.82 179.75 2.30 8.04 15 15 N -0.46 -20.52 11.21 -188.89 -2.12 -22.64 15 16 C 0.01 0.65 8.00 128.55 1.03 1.68 15 17 N 0.04 2.37 4.85 -50.08 -0.24 2.13 15 18 O -0.20 -11.40 15.93 3.51 0.06 -11.34 15 19 O -0.28 -16.35 19.97 3.51 0.07 -16.28 15 20 C 0.02 1.07 6.77 39.97 0.27 1.34 15 21 H 0.31 11.81 8.27 -92.71 -0.77 11.04 15 22 H 0.13 5.39 6.65 -2.91 -0.02 5.37 15 23 H 0.17 3.77 8.06 -2.91 -0.02 3.74 15 24 H 0.21 3.56 8.06 -2.91 -0.02 3.54 15 25 H 0.29 5.12 8.06 -2.91 -0.02 5.10 15 Total: -1.00 -68.40 237.21 5.73 -62.67 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 1.25 Total: 7.22 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 5.46 Total: -14.24 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: -3.13 Total: -66.23 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: 0.13 Total: -27.63 kcal Atomic # 14 Polarization: 36.18 SS G_CDS: 2.03 Total: 38.21 kcal Total: -68.40 5.73 -62.67 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259811155.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.257 kcal (2) G-P(sol) polarization free energy of solvation -68.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds