Wall clock time and date at job start Mon Mar 30 2020 03:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29785 * 1 3 3 Si 1.86806 * 119.99700 * 2 1 4 4 H 1.48503 * 109.46968 * 274.74351 * 3 2 1 5 5 H 1.48490 * 109.47450 * 34.74534 * 3 2 1 6 6 H 1.48499 * 109.46915 * 154.74376 * 3 2 1 7 7 C 1.41814 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00106 * 163.02403 * 7 2 1 9 9 C 1.39538 * 120.00053 * 343.01647 * 7 2 1 10 10 C 1.46822 * 120.47769 * 336.24208 * 9 7 2 11 11 C 1.35371 * 118.78259 * 179.97438 * 10 9 7 12 12 C 1.41391 * 119.83371 * 359.97438 * 11 10 9 13 13 C 1.37912 * 132.50173 * 180.02562 * 12 11 10 14 14 N 1.48116 * 126.08460 * 359.97438 * 13 12 11 15 15 O 1.31700 * 119.99711 * 179.97438 * 14 13 12 16 16 O 1.31700 * 120.00200 * 359.97438 * 14 13 12 17 17 N 1.33730 * 107.82945 * 179.97438 * 13 12 11 18 18 C 1.30507 * 109.95075 * 359.97438 * 17 13 12 19 19 N 1.36907 * 109.05025 * 0.02562 * 18 17 13 20 20 C 1.34507 * 132.16749 * 180.02562 * 19 18 17 21 21 H 0.97004 * 120.00150 * 359.97438 * 1 2 3 22 22 H 1.08002 * 120.60953 * 359.94835 * 10 9 7 23 23 H 1.08003 * 120.08230 * 179.97438 * 11 10 9 24 24 H 1.07996 * 125.46922 * 179.97438 * 18 17 13 25 25 H 1.07999 * 119.91362 * 359.94626 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2979 0.0000 0.0000 3 14 2.2318 1.6178 0.0000 4 1 2.3790 2.1044 -1.3953 5 1 1.4831 2.6217 0.7979 6 1 3.5759 1.4134 0.5974 7 6 2.0069 -1.2281 -0.0005 8 1 3.0516 -1.2484 -0.2736 9 6 1.3549 -2.4104 0.3519 10 6 0.1548 -2.3755 1.1970 11 6 -0.4508 -3.5430 1.5175 12 6 0.0766 -4.7639 1.0377 13 6 -0.3179 -6.0758 1.1966 14 7 -1.4867 -6.5472 1.9748 15 8 -1.7544 -7.8347 2.0462 16 8 -2.2582 -5.6788 2.5954 17 7 0.5425 -6.8466 0.5229 18 6 1.4513 -6.1049 -0.0491 19 7 1.2041 -4.7904 0.2432 20 6 1.8374 -3.6545 -0.1001 21 1 -0.4850 0.8401 0.0004 22 1 -0.2374 -1.4357 1.5566 23 1 -1.3347 -3.5418 2.1382 24 1 2.2676 -6.4695 -0.6548 25 1 2.7187 -3.6964 -0.7229 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259814219.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:15 Heat of formation + Delta-G solvation = 79.709884 kcal Electronic energy + Delta-G solvation = -15379.415463 eV Core-core repulsion = 12555.637593 eV Total energy + Delta-G solvation = -2823.777870 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.78222 -39.47929 -38.36556 -35.92932 -35.17396 -34.20788 -32.21102 -30.26886 -27.91441 -26.63603 -24.09462 -23.41429 -22.47946 -20.01403 -19.22237 -18.78622 -17.64257 -17.48862 -17.39879 -16.92875 -16.15853 -15.82825 -15.20195 -14.97560 -14.07690 -13.68664 -13.09721 -13.04643 -12.80837 -12.30052 -12.19338 -12.09339 -11.86219 -11.76210 -11.70016 -11.61421 -11.34268 -10.20633 -9.15873 -8.82946 -6.66700 -1.48829 0.22711 0.23569 0.41187 1.41172 1.46455 1.60273 1.75713 1.78752 2.10907 2.25530 3.08720 3.35499 3.57621 3.76627 3.98488 4.15507 4.48253 4.59114 4.85390 5.05493 5.20551 5.31728 5.38065 5.57920 5.81427 5.97829 6.22177 6.33852 6.49819 6.55866 7.87412 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.047781 B = 0.006798 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.869850 B = 4118.099122 C = 4633.486241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.041 3.959 3 Si 0.993 3.007 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.248 1.248 7 C -0.412 4.412 8 H 0.120 0.880 9 C 0.068 3.932 10 C -0.067 4.067 11 C -0.121 4.121 12 C 0.028 3.972 13 C 0.004 3.996 14 N 0.064 4.936 15 O -0.289 6.289 16 O -0.269 6.269 17 N -0.444 5.444 18 C 0.172 3.828 19 N -0.283 5.283 20 C -0.129 4.129 21 H 0.311 0.689 22 H 0.147 0.853 23 H 0.139 0.861 24 H 0.282 0.718 25 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.359 6.820 -3.558 11.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.184 4.184 3 Si 0.812 3.188 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.171 1.171 7 C -0.437 4.437 8 H 0.138 0.862 9 C 0.063 3.937 10 C -0.091 4.091 11 C -0.142 4.142 12 C -0.096 4.096 13 C -0.217 4.217 14 N 0.499 4.501 15 O -0.450 6.450 16 O -0.432 6.432 17 N -0.160 5.160 18 C -0.108 4.108 19 N 0.053 4.947 20 C -0.261 4.261 21 H 0.123 0.877 22 H 0.164 0.836 23 H 0.157 0.843 24 H 0.297 0.703 25 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 8.324 5.956 -3.803 10.919 hybrid contribution -0.632 0.953 0.420 1.218 sum 7.692 6.908 -3.383 10.879 Atomic orbital electron populations 1.69265 1.10069 1.33577 1.26508 1.27291 0.95387 1.05417 0.90300 0.84962 0.79528 0.74431 0.79859 1.18380 1.19251 1.17072 1.20191 0.99324 0.89979 1.34252 0.86216 1.18809 0.91412 0.92551 0.90884 1.22889 0.95302 0.97064 0.93825 1.20568 1.01741 0.89104 1.02747 1.18309 0.93884 0.93407 1.04034 1.19292 0.97548 0.89302 1.15543 1.48951 1.00611 1.01846 0.98651 1.96155 1.81167 0.93904 1.73792 1.96130 1.48258 1.49073 1.49753 1.69049 1.03148 1.34542 1.09259 1.26276 1.02668 0.75559 1.06251 1.42492 1.16032 1.08964 1.27187 1.22429 1.07323 0.81793 1.14535 0.87653 0.83576 0.84313 0.70318 0.78863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -28.67 10.84 22.15 0.24 -28.43 15 2 C 0.04 1.41 5.23 85.88 0.45 1.86 15 3 Si 0.99 25.37 29.61 68.60 2.03 27.40 15 4 H -0.26 -6.55 7.11 99.48 0.71 -5.84 15 5 H -0.27 -6.87 7.11 99.48 0.71 -6.16 15 6 H -0.25 -6.15 7.11 99.48 0.71 -5.44 15 7 C -0.41 -14.65 9.07 23.47 0.21 -14.44 15 8 H 0.12 3.71 7.93 -2.91 -0.02 3.68 15 9 C 0.07 2.62 5.71 -20.07 -0.11 2.51 15 10 C -0.07 -2.74 8.87 23.85 0.21 -2.53 15 11 C -0.12 -5.25 9.67 22.38 0.22 -5.03 15 12 C 0.03 1.26 6.69 38.88 0.26 1.52 15 13 C 0.00 0.17 8.20 128.98 1.06 1.23 15 14 N 0.06 3.41 4.99 -49.04 -0.24 3.16 15 15 O -0.29 -15.76 19.97 3.51 0.07 -15.69 15 16 O -0.27 -14.05 18.26 3.51 0.06 -13.99 15 17 N -0.44 -19.16 11.18 -187.32 -2.09 -21.25 15 18 C 0.17 5.67 12.77 179.66 2.29 7.97 15 19 N -0.28 -10.59 2.90 -346.70 -1.01 -11.60 15 20 C -0.13 -4.43 10.78 84.93 0.92 -3.51 15 21 H 0.31 10.17 8.27 -92.71 -0.77 9.40 15 22 H 0.15 5.87 6.26 -2.91 -0.02 5.86 15 23 H 0.14 5.99 6.82 -2.91 -0.02 5.97 15 24 H 0.28 5.34 8.06 -2.91 -0.02 5.31 15 25 H 0.19 5.03 8.06 -2.91 -0.02 5.01 15 Total: -1.00 -58.84 241.46 5.81 -53.03 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 1.25 Total: 17.80 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 5.50 Total: -10.43 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -3.11 Total: -58.12 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: 0.13 Total: -29.68 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: 2.03 Total: 27.40 kcal Total: -58.84 5.81 -53.03 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259814219.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.742 kcal (2) G-P(sol) polarization free energy of solvation -58.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds