Wall clock time and date at job start Mon Mar 30 2020 02:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47213 * 2 1 4 4 H 1.08003 * 119.99947 * 0.02562 * 3 2 1 5 5 C 1.37881 * 120.00105 * 179.97438 * 3 2 1 6 6 N 1.31513 * 119.99734 * 0.02562 * 5 3 2 7 7 Si 1.86804 * 119.99920 * 180.02562 * 5 3 2 8 8 H 1.48495 * 109.47024 * 60.00256 * 7 5 3 9 9 H 1.48505 * 109.46820 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46898 * 299.99632 * 7 5 3 11 11 N 1.46905 * 109.46947 * 119.99953 * 2 1 3 12 12 C 1.46901 * 110.99870 * 300.00190 * 11 2 1 13 13 C 1.53003 * 117.49740 * 223.62163 * 12 11 2 14 14 C 1.52996 * 117.50109 * 154.99996 * 12 11 2 15 15 C 1.50697 * 109.47371 * 239.99930 * 2 1 3 16 16 C 1.38657 * 120.79163 * 239.72229 * 15 2 1 17 17 C 1.38203 * 119.16046 * 179.79706 * 16 15 2 18 18 N 1.31859 * 120.76669 * 0.48602 * 17 16 15 19 19 C 1.31872 * 121.72768 * 359.74280 * 18 17 16 20 20 C 1.38206 * 120.76414 * 0.02562 * 19 18 17 21 21 H 1.08996 * 109.47352 * 300.00278 * 1 2 3 22 22 H 1.09012 * 109.46801 * 60.00052 * 1 2 3 23 23 H 1.08998 * 109.47171 * 179.97438 * 1 2 3 24 24 H 0.97005 * 119.99709 * 179.97438 * 6 5 3 25 25 H 1.00901 * 110.99869 * 176.04901 * 11 2 1 26 26 H 1.09007 * 115.55097 * 9.32618 * 12 11 2 27 27 H 1.08999 * 117.49741 * 0.02562 * 13 12 11 28 28 H 1.08998 * 117.49619 * 145.01632 * 13 12 11 29 29 H 1.08996 * 117.50348 * 214.97955 * 14 12 11 30 30 H 1.09002 * 117.49468 * 359.97365 * 14 12 11 31 31 H 1.08000 * 120.41300 * 359.97438 * 16 15 2 32 32 H 1.08005 * 119.61337 * 180.20406 * 17 16 15 33 33 H 1.08001 * 119.62192 * 179.97438 * 19 18 17 34 34 H 1.07998 * 120.41791 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 1 1.3305 2.2417 0.0004 5 6 3.3879 1.6727 0.0005 6 7 4.2425 0.6731 0.0005 7 14 4.0106 3.4339 0.0013 8 1 3.5152 4.1336 1.2138 9 1 5.4957 3.4339 0.0011 10 1 3.5160 4.1342 -1.2113 11 7 2.0197 -0.6925 1.1995 12 6 1.5486 -0.0264 2.4211 13 6 2.5582 0.1675 3.5543 14 6 1.4442 -0.8723 3.6917 15 6 2.0324 -0.7104 -1.2304 16 6 2.8352 -1.8357 -1.1222 17 6 3.2736 -2.4633 -2.2729 18 7 2.9447 -1.9982 -3.4621 19 6 2.1870 -0.9281 -3.6029 20 6 1.7076 -0.2509 -2.4976 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 5.1962 0.8503 0.0005 25 1 3.0262 -0.7626 1.1910 26 1 0.8017 0.7537 2.2731 27 1 3.5720 -0.1989 3.3931 28 1 2.4758 1.0753 4.1518 29 1 0.6290 -0.6486 4.3798 30 1 1.7247 -1.9232 3.6210 31 1 3.1120 -2.2185 -0.1510 32 1 3.8965 -3.3424 -2.1971 33 1 1.9388 -0.5763 -4.5934 34 1 1.0871 0.6247 -2.6194 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259815018.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:16 Heat of formation + Delta-G solvation = 61.952801 kcal Electronic energy + Delta-G solvation = -16706.163345 eV Core-core repulsion = 14218.707571 eV Total energy + Delta-G solvation = -2487.455774 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.25210 -37.24443 -34.81410 -31.85973 -30.33146 -30.09818 -27.84229 -25.29583 -23.09190 -22.20314 -21.60073 -20.30960 -19.15632 -16.77229 -16.08262 -15.19192 -14.81640 -14.68086 -14.20511 -13.94381 -13.29291 -12.80475 -12.65452 -12.23345 -12.04029 -11.70643 -11.14347 -11.12124 -10.89152 -10.82815 -10.65580 -10.54867 -10.35036 -9.84974 -9.55294 -9.28137 -8.86552 -8.44485 -8.17481 -8.08958 -7.09977 -6.15018 -4.35106 2.22086 2.50472 3.18965 3.25069 3.27150 4.25562 4.71333 4.90575 5.05378 5.27135 5.34358 5.75178 5.82811 5.84004 5.97964 6.18697 6.25711 6.27477 6.33997 6.43488 6.50619 6.57523 6.68728 6.74534 6.78508 6.82179 6.82816 7.05822 7.34559 7.61620 7.65417 7.80216 7.97619 8.43761 8.70826 8.86581 8.93309 9.36699 10.78690 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.019168 B = 0.012836 C = 0.009513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.435193 B = 2180.823435 C = 2942.629413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.258 3.742 3 C -0.540 4.540 4 H 0.059 0.941 5 C 0.078 3.922 6 N -0.880 5.880 7 Si 0.892 3.108 8 H -0.276 1.276 9 H -0.287 1.287 10 H -0.276 1.276 11 N -0.656 5.656 12 C 0.074 3.926 13 C -0.209 4.209 14 C -0.198 4.198 15 C 0.045 3.955 16 C -0.136 4.136 17 C 0.072 3.928 18 N -0.513 5.513 19 C 0.071 3.929 20 C -0.165 4.165 21 H 0.048 0.952 22 H 0.046 0.954 23 H 0.038 0.962 24 H 0.267 0.733 25 H 0.362 0.638 26 H 0.102 0.898 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.128 0.872 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.608 -1.918 1.510 4.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.169 3.831 3 C -0.579 4.579 4 H 0.078 0.922 5 C -0.126 4.126 6 N -0.517 5.517 7 Si 0.720 3.280 8 H -0.202 1.202 9 H -0.213 1.213 10 H -0.202 1.202 11 N -0.290 5.290 12 C -0.038 4.038 13 C -0.248 4.248 14 C -0.236 4.236 15 C 0.036 3.964 16 C -0.156 4.156 17 C -0.084 4.084 18 N -0.223 5.223 19 C -0.085 4.085 20 C -0.186 4.186 21 H 0.067 0.933 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.077 0.923 25 H 0.187 0.813 26 H 0.120 0.880 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.146 0.854 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.579 -2.878 0.733 4.651 hybrid contribution 0.985 2.390 0.841 2.718 sum -2.594 -0.488 1.574 3.073 Atomic orbital electron populations 1.21812 0.96394 0.99588 1.00400 1.17457 0.90302 0.90773 0.84615 1.21519 0.91858 0.91585 1.52984 0.92238 1.24933 0.96849 0.97174 0.93691 1.69677 1.02602 1.30502 1.48964 0.86645 0.77711 0.85004 0.78688 1.20195 1.21258 1.20200 1.60758 1.18694 1.49599 0.99947 1.22010 0.99241 0.96711 0.85842 1.23187 0.95558 1.00007 1.06085 1.23111 1.00754 0.97037 1.02740 1.20407 0.90551 0.90283 0.95131 1.21808 0.98202 0.96423 0.99154 1.22423 0.98516 0.99158 0.88322 1.67445 1.13820 1.13758 1.27323 1.22340 0.95524 0.92569 0.98055 1.21759 1.02861 1.00781 0.93180 0.93261 0.93518 0.94254 0.92320 0.81341 0.87991 0.89549 0.90340 0.90220 0.89579 0.85435 0.84705 0.84669 0.86121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 8.12 37.16 0.30 -2.14 16 2 C 0.26 5.70 0.50 -133.90 -0.07 5.63 16 3 C -0.54 -13.11 6.74 -34.44 -0.23 -13.35 16 4 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 5 C 0.08 1.94 5.22 -17.82 -0.09 1.85 16 6 N -0.88 -22.33 10.22 55.43 0.57 -21.76 16 7 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 8 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 9 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 N -0.66 -14.10 5.41 -95.38 -0.52 -14.62 16 12 C 0.07 1.47 5.01 -67.71 -0.34 1.13 16 13 C -0.21 -3.88 10.23 -26.73 -0.27 -4.15 16 14 C -0.20 -3.36 10.46 -26.73 -0.28 -3.64 16 15 C 0.05 1.00 3.69 -104.32 -0.39 0.62 16 16 C -0.14 -2.91 8.71 -39.44 -0.34 -3.26 16 17 C 0.07 1.46 11.18 -17.55 -0.20 1.26 16 18 N -0.51 -10.73 10.36 -13.25 -0.14 -10.87 16 19 C 0.07 1.43 11.18 -17.55 -0.20 1.23 16 20 C -0.17 -3.48 8.97 -39.44 -0.35 -3.84 16 21 H 0.05 0.93 6.31 -51.93 -0.33 0.60 16 22 H 0.05 0.87 7.48 -51.92 -0.39 0.48 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.27 6.73 8.31 -40.82 -0.34 6.40 16 25 H 0.36 8.41 5.39 -39.29 -0.21 8.20 16 26 H 0.10 2.08 6.04 -51.92 -0.31 1.77 16 27 H 0.09 1.68 8.09 -51.93 -0.42 1.26 16 28 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.13 2.71 6.54 -52.49 -0.34 2.37 16 32 H 0.14 2.33 8.06 -52.48 -0.42 1.91 16 33 H 0.14 2.26 8.06 -52.49 -0.42 1.84 16 34 H 0.12 2.41 7.67 -52.49 -0.40 2.01 16 LS Contribution 279.11 15.07 4.21 4.21 Total: -1.00 -25.67 279.11 -7.84 -33.51 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -4.48 Total: 12.98 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -2.46 Total: -18.66 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -0.09 Total: -47.25 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -25.67 -7.84 -33.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259815018.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.465 kcal (2) G-P(sol) polarization free energy of solvation -25.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds