Wall clock time and date at job start Mon Mar 30 2020 03:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86799 * 120.00051 * 2 1 4 4 H 1.48500 * 109.46972 * 359.97438 * 3 2 1 5 5 H 1.48492 * 109.47626 * 120.00013 * 3 2 1 6 6 H 1.48502 * 109.46825 * 240.00260 * 3 2 1 7 7 C 1.39975 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99965 * 156.06145 * 7 2 1 9 9 C 1.40796 * 120.00242 * 336.05713 * 7 2 1 10 10 C 1.39819 * 123.44608 * 335.71177 * 9 7 2 11 11 N 1.29273 * 117.06194 * 179.97438 * 10 9 7 12 12 S 1.69399 * 108.41310 * 0.02562 * 11 10 9 13 13 C 1.40583 * 123.45084 * 155.41447 * 9 7 2 14 14 C 1.47185 * 127.40783 * 0.02562 * 13 9 7 15 15 C 1.40274 * 120.22806 * 179.72392 * 14 13 9 16 16 C 1.38508 * 117.85989 * 179.75814 * 15 14 13 17 17 C 1.38831 * 118.11520 * 0.49061 * 16 15 14 18 18 N 1.32032 * 120.17155 * 359.76620 * 17 16 15 19 19 N 1.28358 * 122.35256 * 359.97438 * 18 17 16 20 20 H 0.97006 * 119.99932 * 175.76719 * 1 2 3 21 21 H 1.08003 * 121.47570 * 359.97438 * 10 9 7 22 22 H 1.07999 * 121.06756 * 359.97438 * 15 14 13 23 23 H 1.08002 * 120.93866 * 180.23164 * 16 15 14 24 24 H 1.08008 * 119.91261 * 179.74237 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 1.2777 2.7464 -0.0006 5 1 3.0965 1.6965 1.2124 6 1 3.0965 1.6963 -1.2126 7 6 2.0086 -1.2122 0.0005 8 1 3.0189 -1.2526 -0.3789 9 6 1.3956 -2.3789 0.4959 10 6 0.3474 -2.3653 1.4211 11 7 -0.1245 -3.5102 1.7921 12 16 0.7339 -4.7289 0.9876 13 6 1.7707 -3.6766 0.1063 14 6 2.8258 -4.0537 -0.8480 15 6 3.0785 -5.4058 -1.1233 16 6 4.0791 -5.7050 -2.0332 17 6 4.7767 -4.6515 -2.6084 18 7 4.4786 -3.4055 -2.2894 19 7 3.5506 -3.1140 -1.4519 20 1 -0.4850 -0.8378 -0.0620 21 1 -0.0506 -1.4391 1.8088 22 1 2.5089 -6.1881 -0.6440 23 1 4.3128 -6.7290 -2.2847 24 1 5.5656 -4.8518 -3.3184 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259838383.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:06 Heat of formation + Delta-G solvation = 75.039402 kcal Electronic energy + Delta-G solvation = -13365.881706 eV Core-core repulsion = 10984.654180 eV Total energy + Delta-G solvation = -2381.227526 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.82745 -37.82595 -34.02240 -32.67276 -32.19306 -29.40522 -26.14169 -23.95649 -23.63628 -22.28764 -19.68696 -18.21114 -16.77774 -16.04357 -15.78736 -15.10323 -14.29696 -14.07890 -13.87477 -13.14138 -12.73445 -12.62766 -12.26756 -12.05700 -11.41458 -10.64279 -10.48343 -10.29820 -10.02721 -9.90646 -9.64179 -9.53721 -9.17387 -8.71771 -7.99532 -7.72859 -7.67988 -4.75147 1.20062 1.60772 2.39423 2.81042 2.90142 2.99062 3.20615 3.24121 3.56205 3.72100 4.45426 4.75725 5.06956 5.19545 5.37423 5.41991 5.73982 5.93853 6.23830 6.42801 6.53786 6.68616 6.96203 7.06145 7.18930 7.58947 7.64547 8.02049 8.28675 9.41181 9.71379 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.021806 B = 0.011741 C = 0.007839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.757540 B = 2384.226835 C = 3570.922722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.021 3.979 3 Si 1.075 2.925 4 H -0.269 1.269 5 H -0.267 1.267 6 H -0.264 1.264 7 C -0.368 4.368 8 H 0.123 0.877 9 C 0.027 3.973 10 C 0.088 3.912 11 N -0.454 5.454 12 S 0.123 5.877 13 C -0.374 4.374 14 C 0.212 3.788 15 C -0.159 4.159 16 C -0.112 4.112 17 C -0.038 4.038 18 N -0.234 5.234 19 N -0.265 5.265 20 H 0.301 0.699 21 H 0.170 0.830 22 H 0.132 0.868 23 H 0.132 0.868 24 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.687 -3.070 -1.162 4.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.204 4.204 3 Si 0.895 3.105 4 H -0.193 1.193 5 H -0.192 1.192 6 H -0.188 1.188 7 C -0.402 4.402 8 H 0.141 0.859 9 C 0.013 3.987 10 C -0.122 4.122 11 N -0.268 5.268 12 S 0.270 5.730 13 C -0.499 4.499 14 C 0.075 3.925 15 C -0.189 4.189 16 C -0.139 4.139 17 C -0.204 4.204 18 N -0.076 5.076 19 N -0.112 5.112 20 H 0.116 0.884 21 H 0.187 0.813 22 H 0.150 0.850 23 H 0.150 0.850 24 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.680 -1.689 -0.484 3.204 hybrid contribution 0.567 -1.912 -0.547 2.068 sum 3.247 -3.601 -1.031 4.957 Atomic orbital electron populations 1.70587 1.08337 1.34612 1.24015 1.27801 0.95576 1.05795 0.91254 0.83473 0.75689 0.72147 0.79215 1.19304 1.19204 1.18810 1.21214 1.03107 0.91007 1.24887 0.85949 1.18234 0.92748 0.93683 0.94021 1.23231 0.95874 0.96395 0.96711 1.75932 1.24323 1.03026 1.23519 1.82621 1.30699 1.16318 1.43369 1.21589 1.14728 0.95607 1.17990 1.19921 0.91811 0.89416 0.91375 1.22163 0.99552 0.97094 1.00139 1.21996 0.95508 1.00371 0.96057 1.23790 1.02588 0.90850 1.03203 1.72855 1.08733 1.18893 1.07084 1.73540 1.03100 1.28752 1.05854 0.88443 0.81286 0.85036 0.84964 0.83024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -17.44 12.50 55.55 0.69 -16.74 14 2 C 0.02 0.47 5.12 -17.31 -0.09 0.39 14 3 Si 1.07 19.27 30.00 -169.99 -5.10 14.17 14 4 H -0.27 -4.72 7.11 56.52 0.40 -4.32 14 5 H -0.27 -4.58 7.11 56.52 0.40 -4.18 14 6 H -0.26 -4.67 7.11 56.52 0.40 -4.26 14 7 C -0.37 -8.99 8.47 -37.97 -0.32 -9.31 14 8 H 0.12 3.10 6.17 -52.49 -0.32 2.78 14 9 C 0.03 0.67 5.30 -107.45 -0.57 0.10 14 10 C 0.09 2.05 9.20 -18.04 -0.17 1.89 14 11 N -0.45 -10.57 11.96 29.73 0.36 -10.21 14 12 S 0.12 2.72 22.85 -107.50 -2.46 0.26 14 13 C -0.37 -9.11 6.52 -35.07 -0.23 -9.34 14 14 C 0.21 4.96 6.82 -82.89 -0.57 4.39 14 15 C -0.16 -3.09 9.77 -38.72 -0.38 -3.47 14 16 C -0.11 -1.84 10.20 -39.26 -0.40 -2.24 14 17 C -0.04 -0.67 11.31 -17.25 -0.20 -0.87 14 18 N -0.23 -5.09 11.50 30.61 0.35 -4.74 14 19 N -0.27 -6.43 8.99 33.27 0.30 -6.13 14 20 H 0.30 7.17 6.45 -40.82 -0.26 6.91 14 21 H 0.17 3.76 6.71 -52.48 -0.35 3.41 14 22 H 0.13 2.31 7.52 -52.49 -0.39 1.91 14 23 H 0.13 1.60 8.06 -52.49 -0.42 1.18 14 24 H 0.15 2.04 8.06 -52.48 -0.42 1.62 14 LS Contribution 234.79 15.07 3.54 3.54 Total: -1.00 -27.07 234.79 -6.20 -33.28 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -0.97 Total: 5.04 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -2.91 Total: -18.46 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 1.70 Total: -37.83 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.10 Total: 14.17 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -2.46 Total: 0.26 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -27.07 -6.20 -33.28 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259838383.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.319 kcal (2) G-P(sol) polarization free energy of solvation -27.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds