Wall clock time and date at job start Mon Mar 30 2020 03:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86799 * 120.00051 * 2 1 4 4 H 1.48500 * 109.46972 * 359.97438 * 3 2 1 5 5 H 1.48492 * 109.47626 * 120.00013 * 3 2 1 6 6 H 1.48502 * 109.46825 * 240.00260 * 3 2 1 7 7 C 1.39975 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99965 * 156.06145 * 7 2 1 9 9 C 1.40796 * 120.00242 * 336.05713 * 7 2 1 10 10 C 1.39819 * 123.44608 * 335.71177 * 9 7 2 11 11 N 1.29273 * 117.06194 * 179.97438 * 10 9 7 12 12 S 1.69399 * 108.41310 * 0.02562 * 11 10 9 13 13 C 1.40583 * 123.45084 * 155.41447 * 9 7 2 14 14 C 1.47185 * 127.40783 * 0.02562 * 13 9 7 15 15 C 1.40274 * 120.22806 * 179.72392 * 14 13 9 16 16 C 1.38508 * 117.85989 * 179.75814 * 15 14 13 17 17 C 1.38831 * 118.11520 * 0.49061 * 16 15 14 18 18 N 1.32032 * 120.17155 * 359.76620 * 17 16 15 19 19 N 1.28358 * 122.35256 * 359.97438 * 18 17 16 20 20 H 0.97006 * 119.99932 * 175.76719 * 1 2 3 21 21 H 1.08003 * 121.47570 * 359.97438 * 10 9 7 22 22 H 1.07999 * 121.06756 * 359.97438 * 15 14 13 23 23 H 1.08002 * 120.93866 * 180.23164 * 16 15 14 24 24 H 1.08008 * 119.91261 * 179.74237 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 1.2777 2.7464 -0.0006 5 1 3.0965 1.6965 1.2124 6 1 3.0965 1.6963 -1.2126 7 6 2.0086 -1.2122 0.0005 8 1 3.0189 -1.2526 -0.3789 9 6 1.3956 -2.3789 0.4959 10 6 0.3474 -2.3653 1.4211 11 7 -0.1245 -3.5102 1.7921 12 16 0.7339 -4.7289 0.9876 13 6 1.7707 -3.6766 0.1063 14 6 2.8258 -4.0537 -0.8480 15 6 3.0785 -5.4058 -1.1233 16 6 4.0791 -5.7050 -2.0332 17 6 4.7767 -4.6515 -2.6084 18 7 4.4786 -3.4055 -2.2894 19 7 3.5506 -3.1140 -1.4519 20 1 -0.4850 -0.8378 -0.0620 21 1 -0.0506 -1.4391 1.8088 22 1 2.5089 -6.1881 -0.6440 23 1 4.3128 -6.7290 -2.2847 24 1 5.5656 -4.8518 -3.3184 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259838383.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:06 Heat of formation + Delta-G solvation = 58.320131 kcal Electronic energy + Delta-G solvation = -13366.606707 eV Core-core repulsion = 10984.654180 eV Total energy + Delta-G solvation = -2381.952528 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.42788 -39.59628 -35.73607 -34.31724 -33.72579 -31.12541 -27.85983 -25.66462 -25.19643 -23.96395 -21.41307 -19.92759 -18.44818 -17.48155 -17.45205 -16.74284 -15.80561 -15.73745 -15.51224 -14.85940 -14.42432 -14.18875 -13.92204 -13.65117 -12.95854 -12.23114 -12.08345 -11.88245 -11.65442 -11.60329 -11.29729 -11.02738 -10.90363 -10.29828 -9.75455 -9.49061 -9.42339 -6.54832 -0.48796 0.10690 0.72831 1.03524 1.32631 1.39694 1.53777 1.84192 1.95461 2.24362 2.80271 3.04899 3.53416 3.73920 3.95805 4.01809 4.21524 4.34886 4.53051 4.83912 5.00278 5.07417 5.25001 5.40740 5.56845 5.81845 5.86155 6.24614 6.51719 7.66500 8.11337 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.021806 B = 0.011741 C = 0.007839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.757540 B = 2384.226835 C = 3570.922722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.000 4.000 3 Si 1.119 2.881 4 H -0.261 1.261 5 H -0.255 1.255 6 H -0.263 1.263 7 C -0.405 4.405 8 H 0.106 0.894 9 C 0.007 3.993 10 C 0.083 3.917 11 N -0.469 5.469 12 S 0.167 5.833 13 C -0.399 4.399 14 C 0.184 3.816 15 C -0.164 4.164 16 C -0.091 4.091 17 C -0.017 4.017 18 N -0.274 5.274 19 N -0.302 5.302 20 H 0.288 0.712 21 H 0.174 0.826 22 H 0.150 0.850 23 H 0.191 0.809 24 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.199 -4.917 -2.151 7.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.220 4.220 3 Si 0.934 3.066 4 H -0.185 1.185 5 H -0.179 1.179 6 H -0.187 1.187 7 C -0.439 4.439 8 H 0.124 0.876 9 C -0.007 4.007 10 C -0.126 4.126 11 N -0.284 5.284 12 S 0.315 5.685 13 C -0.525 4.525 14 C 0.044 3.956 15 C -0.193 4.193 16 C -0.118 4.118 17 C -0.184 4.184 18 N -0.114 5.114 19 N -0.147 5.147 20 H 0.101 0.899 21 H 0.191 0.809 22 H 0.167 0.833 23 H 0.208 0.792 24 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 4.189 -3.532 -1.471 5.674 hybrid contribution 0.296 -1.718 -0.417 1.793 sum 4.485 -5.251 -1.889 7.159 Atomic orbital electron populations 1.70680 1.08714 1.33587 1.26310 1.28902 0.95552 1.07856 0.89723 0.82964 0.74911 0.69100 0.79628 1.18454 1.17893 1.18702 1.21123 1.02899 0.92122 1.27772 0.87640 1.18537 0.93345 0.94387 0.94432 1.23182 0.96034 0.96610 0.96765 1.75828 1.24969 1.03376 1.24224 1.82215 1.29267 1.14973 1.42071 1.22133 1.15564 0.96304 1.18522 1.20186 0.92140 0.91335 0.91961 1.22472 1.00485 0.95674 1.00715 1.22625 0.92930 1.02892 0.93366 1.24695 1.02147 0.89712 1.01875 1.72800 1.09147 1.21569 1.07892 1.73480 1.04090 1.30268 1.06867 0.89876 0.80942 0.83253 0.79151 0.78187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -37.00 12.50 21.84 0.27 -36.73 14 2 C 0.00 0.01 5.12 85.26 0.44 0.44 14 3 Si 1.12 39.63 30.00 68.60 2.06 41.69 14 4 H -0.26 -8.79 7.11 99.48 0.71 -8.08 14 5 H -0.25 -8.42 7.11 99.48 0.71 -7.72 14 6 H -0.26 -9.13 7.11 99.48 0.71 -8.42 14 7 C -0.41 -20.69 8.47 23.32 0.20 -20.49 14 8 H 0.11 5.64 6.17 -2.91 -0.02 5.62 14 9 C 0.01 0.36 5.30 -21.70 -0.12 0.24 14 10 C 0.08 4.02 9.20 85.45 0.79 4.80 14 11 N -0.47 -22.06 11.96 -59.84 -0.72 -22.77 14 12 S 0.17 7.29 22.85 -56.49 -1.29 6.00 14 13 C -0.40 -19.72 6.52 25.19 0.16 -19.56 14 14 C 0.18 8.52 6.82 41.79 0.29 8.81 14 15 C -0.16 -5.87 9.77 22.83 0.22 -5.65 14 16 C -0.09 -2.50 10.20 22.48 0.23 -2.27 14 17 C -0.02 -0.53 11.31 84.80 0.96 0.43 14 18 N -0.27 -11.56 11.50 -57.05 -0.66 -12.22 14 19 N -0.30 -14.72 8.99 -48.67 -0.44 -15.16 14 20 H 0.29 14.39 6.45 -92.70 -0.60 13.80 14 21 H 0.17 8.03 6.71 -2.91 -0.02 8.01 14 22 H 0.15 4.74 7.52 -2.91 -0.02 4.71 14 23 H 0.19 3.11 8.06 -2.91 -0.02 3.08 14 24 H 0.20 4.12 8.06 -2.91 -0.02 4.10 14 Total: -1.00 -61.15 234.79 3.81 -57.34 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 1.42 Total: 15.10 kcal Atomic # 6 Polarization: -36.41 SS G_CDS: 3.17 Total: -33.24 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -1.54 Total: -86.88 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.06 Total: 41.69 kcal Atomic # 16 Polarization: 7.29 SS G_CDS: -1.29 Total: 6.00 kcal Total: -61.15 3.81 -57.34 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259838383.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.661 kcal (2) G-P(sol) polarization free energy of solvation -61.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds