Wall clock time and date at job start Mon Mar 30 2020 03:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47912 * 110.99848 * 2 1 4 4 C 1.54603 * 102.62445 * 149.11335 * 3 2 1 5 5 C 1.51569 * 102.83350 * 334.46041 * 4 3 2 6 6 C 1.37918 * 131.56335 * 196.06926 * 5 4 3 7 7 C 1.38300 * 120.08172 * 179.64869 * 6 5 4 8 8 C 1.50705 * 120.05694 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.47490 * 340.00474 * 8 7 6 10 10 N 1.46898 * 109.47002 * 220.00030 * 8 7 6 11 11 C 1.50698 * 109.46833 * 100.00537 * 8 7 6 12 12 H 1.07995 * 120.00469 * 359.97438 * 11 8 7 13 13 C 1.37879 * 120.00104 * 180.02562 * 11 8 7 14 14 N 1.31523 * 119.99666 * 359.97438 * 13 11 8 15 15 Si 1.86797 * 120.00453 * 179.97438 * 13 11 8 16 16 H 1.48499 * 109.47151 * 89.99641 * 15 13 11 17 17 H 1.48495 * 109.47456 * 209.99925 * 15 13 11 18 18 H 1.48508 * 109.46915 * 330.00006 * 15 13 11 19 19 C 1.38308 * 119.88440 * 0.02562 * 7 6 5 20 20 C 1.37902 * 120.26348 * 0.09498 * 19 7 6 21 21 C 1.38965 * 107.95560 * 15.94250 * 5 4 3 22 22 H 1.08993 * 109.47071 * 300.03241 * 1 2 3 23 23 H 1.09000 * 109.46980 * 60.03040 * 1 2 3 24 24 H 1.08999 * 109.46775 * 180.02562 * 1 2 3 25 25 H 1.09000 * 110.78136 * 30.82780 * 3 2 1 26 26 H 1.09004 * 110.93782 * 267.47041 * 3 2 1 27 27 H 1.09003 * 110.73663 * 216.12766 * 4 3 2 28 28 H 1.08999 * 110.89530 * 92.86968 * 4 3 2 29 29 H 1.07994 * 119.95913 * 359.62926 * 6 5 4 30 30 H 1.00905 * 110.99755 * 176.04610 * 10 8 7 31 31 H 1.00899 * 111.00423 * 300.00363 * 10 8 7 32 32 H 0.96996 * 119.99428 * 180.02562 * 14 13 11 33 33 H 1.08001 * 119.86417 * 180.11928 * 19 7 6 34 34 H 1.08005 * 119.90139 * 180.28449 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3809 0.0000 4 6 3.3288 1.2324 0.7745 5 6 3.0803 0.0129 1.6395 6 6 3.7400 -0.4714 2.7496 7 6 3.2974 -1.6251 3.3706 8 6 4.0184 -2.1535 4.5840 9 1 5.0254 -1.7379 4.6179 10 7 4.0955 -3.6185 4.5084 11 6 3.2678 -1.7535 5.8280 12 1 2.3598 -1.1743 5.7481 13 6 3.7408 -2.1261 7.0683 14 7 4.8469 -2.8311 7.1657 15 14 2.8109 -1.6298 8.6105 16 1 1.8172 -2.6802 8.9489 17 1 3.7668 -1.4717 9.7357 18 1 2.1090 -0.3428 8.3726 19 6 2.1919 -2.2932 2.8762 20 6 1.5301 -1.8145 1.7650 21 6 1.9709 -0.6530 1.1326 22 1 -0.3633 0.5143 0.8896 23 1 -0.3633 0.5134 -0.8903 24 1 -0.3633 -1.0277 0.0005 25 1 1.3206 2.0555 0.5222 26 1 2.1806 1.7285 -1.0171 27 1 3.5165 2.1114 1.3912 28 1 4.1595 1.0579 0.0907 29 1 4.6036 0.0508 3.1342 30 1 4.6305 -3.9926 5.2778 31 1 3.1739 -4.0279 4.4758 32 1 5.1794 -3.0935 8.0383 33 1 1.8453 -3.1930 3.3626 34 1 0.6647 -2.3383 1.3866 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259862405.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:42 Heat of formation + Delta-G solvation = 31.735452 kcal Electronic energy + Delta-G solvation = -15958.533130 eV Core-core repulsion = 13469.767033 eV Total energy + Delta-G solvation = -2488.766097 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.23296 -36.91740 -34.06310 -32.42912 -31.27597 -29.11426 -28.16259 -26.06145 -25.27557 -22.76867 -22.05060 -20.57997 -19.25835 -16.50957 -16.22873 -15.72661 -15.32483 -15.12970 -14.29612 -13.71380 -13.43182 -12.99891 -12.91078 -12.77885 -12.35886 -12.21864 -11.80799 -11.58036 -11.34548 -11.29339 -11.09159 -10.86136 -10.69322 -10.19170 -10.03113 -9.58718 -9.29257 -8.63648 -8.14414 -7.29572 -7.01670 -6.07386 -4.25288 2.05206 2.09346 3.21509 3.29121 3.33204 3.95105 4.30280 4.52083 4.82519 4.88911 5.13488 5.20395 5.26028 5.47895 5.53828 5.67364 5.75198 5.81656 5.91240 6.01995 6.05437 6.24929 6.37254 6.56147 6.62849 6.85046 7.09301 7.20841 7.26221 7.36061 7.73180 7.75315 7.87728 8.12540 8.68640 8.94857 9.13499 9.46650 10.88776 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.036983 B = 0.006372 C = 0.006288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.912958 B = 4392.966463 C = 4451.640167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.479 5.479 3 C 0.046 3.954 4 C -0.081 4.081 5 C -0.143 4.143 6 C -0.087 4.087 7 C -0.039 4.039 8 C 0.242 3.758 9 H 0.046 0.954 10 N -0.849 5.849 11 C -0.542 4.542 12 H 0.055 0.945 13 C 0.066 3.934 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.087 4.087 20 C -0.135 4.135 21 C 0.057 3.943 22 H 0.034 0.966 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.355 0.645 31 H 0.311 0.689 32 H 0.265 0.735 33 H 0.121 0.879 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.974 5.749 -10.756 13.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.195 5.195 3 C -0.080 4.080 4 C -0.118 4.118 5 C -0.146 4.146 6 C -0.106 4.106 7 C -0.040 4.040 8 C 0.132 3.868 9 H 0.064 0.936 10 N -0.379 5.379 11 C -0.582 4.582 12 H 0.074 0.926 13 C -0.137 4.137 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.106 4.106 20 C -0.156 4.156 21 C -0.039 4.039 22 H 0.053 0.947 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.072 0.928 26 H 0.106 0.894 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.134 0.866 30 H 0.171 0.829 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.139 0.861 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.334 5.569 -11.836 14.126 hybrid contribution -1.288 0.653 2.483 2.873 sum -6.622 6.222 -9.353 13.040 Atomic orbital electron populations 1.22505 0.86875 1.02682 1.00787 1.60709 1.08374 1.14007 1.36402 1.23207 0.95601 0.88400 1.00837 1.21213 0.97285 0.96269 0.97071 1.20324 0.98610 0.98209 0.97415 1.20265 0.99728 0.96560 0.94091 1.20339 0.94582 0.93132 0.95947 1.17950 0.94807 0.86597 0.87407 0.93632 1.59528 1.19110 1.06956 1.52330 1.21851 1.10078 1.35073 0.91214 0.92640 1.25028 0.94720 0.94814 0.99115 1.69751 1.20943 1.37807 1.24789 0.86527 0.79587 0.79062 0.82443 1.20614 1.21075 1.19894 1.20684 0.95317 0.99593 0.94980 1.20335 1.01531 0.96210 0.97541 1.19393 0.97351 0.96552 0.90635 0.94725 0.91308 0.90972 0.92761 0.89383 0.90599 0.90014 0.86648 0.82896 0.87974 0.92477 0.86085 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.16 60.06 0.55 0.77 16 2 N -0.48 -7.10 5.31 -176.84 -0.94 -8.04 16 3 C 0.05 0.57 6.91 -2.42 -0.02 0.55 16 4 C -0.08 -1.12 7.04 -26.61 -0.19 -1.31 16 5 C -0.14 -2.58 6.23 -104.04 -0.65 -3.22 16 6 C -0.09 -1.78 9.66 -39.68 -0.38 -2.16 16 7 C -0.04 -0.86 4.90 -104.57 -0.51 -1.37 16 8 C 0.24 6.08 2.95 -70.02 -0.21 5.88 16 9 H 0.05 1.25 8.01 -51.93 -0.42 0.84 16 10 N -0.85 -20.43 9.02 -6.65 -0.06 -20.49 16 11 C -0.54 -14.62 8.70 -34.44 -0.30 -14.91 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.07 1.76 5.38 -17.82 -0.10 1.67 16 14 N -0.89 -24.61 11.54 55.43 0.64 -23.97 16 15 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 C -0.09 -1.75 9.27 -39.68 -0.37 -2.12 16 20 C -0.14 -2.44 9.53 -39.27 -0.37 -2.82 16 21 C 0.06 1.01 5.95 -83.40 -0.50 0.51 16 22 H 0.03 0.42 8.09 -51.93 -0.42 0.00 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.84 7.31 -51.93 -0.38 0.46 16 25 H 0.05 0.63 7.84 -51.93 -0.41 0.22 16 26 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.12 2.25 8.04 -52.49 -0.42 1.83 16 30 H 0.35 9.10 7.08 -39.29 -0.28 8.82 16 31 H 0.31 7.06 7.34 -39.29 -0.29 6.77 16 32 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.12 2.36 6.67 -52.49 -0.35 2.01 16 34 H 0.11 1.70 7.38 -52.48 -0.39 1.31 16 LS Contribution 278.78 15.07 4.20 4.20 Total: -1.00 -28.53 278.78 -8.80 -37.33 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -4.58 Total: 13.57 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -3.04 Total: -18.54 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.36 Total: -52.50 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.53 -8.80 -37.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259862405.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.063 kcal (2) G-P(sol) polarization free energy of solvation -28.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds