Wall clock time and date at job start Mon Mar 30 2020 03:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47912 * 110.99848 * 2 1 4 4 C 1.54603 * 102.62445 * 149.11335 * 3 2 1 5 5 C 1.51569 * 102.83350 * 334.46041 * 4 3 2 6 6 C 1.37918 * 131.56335 * 196.06926 * 5 4 3 7 7 C 1.38300 * 120.08172 * 179.64869 * 6 5 4 8 8 C 1.50705 * 120.05694 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.47490 * 340.00474 * 8 7 6 10 10 N 1.46898 * 109.47002 * 220.00030 * 8 7 6 11 11 C 1.50698 * 109.46833 * 100.00537 * 8 7 6 12 12 H 1.07995 * 120.00469 * 359.97438 * 11 8 7 13 13 C 1.37879 * 120.00104 * 180.02562 * 11 8 7 14 14 N 1.31523 * 119.99666 * 359.97438 * 13 11 8 15 15 Si 1.86797 * 120.00453 * 179.97438 * 13 11 8 16 16 H 1.48499 * 109.47151 * 89.99641 * 15 13 11 17 17 H 1.48495 * 109.47456 * 209.99925 * 15 13 11 18 18 H 1.48508 * 109.46915 * 330.00006 * 15 13 11 19 19 C 1.38308 * 119.88440 * 0.02562 * 7 6 5 20 20 C 1.37902 * 120.26348 * 0.09498 * 19 7 6 21 21 C 1.38965 * 107.95560 * 15.94250 * 5 4 3 22 22 H 1.08993 * 109.47071 * 300.03241 * 1 2 3 23 23 H 1.09000 * 109.46980 * 60.03040 * 1 2 3 24 24 H 1.08999 * 109.46775 * 180.02562 * 1 2 3 25 25 H 1.09000 * 110.78136 * 30.82780 * 3 2 1 26 26 H 1.09004 * 110.93782 * 267.47041 * 3 2 1 27 27 H 1.09003 * 110.73663 * 216.12766 * 4 3 2 28 28 H 1.08999 * 110.89530 * 92.86968 * 4 3 2 29 29 H 1.07994 * 119.95913 * 359.62926 * 6 5 4 30 30 H 1.00905 * 110.99755 * 176.04610 * 10 8 7 31 31 H 1.00899 * 111.00423 * 300.00363 * 10 8 7 32 32 H 0.96996 * 119.99428 * 180.02562 * 14 13 11 33 33 H 1.08001 * 119.86417 * 180.11928 * 19 7 6 34 34 H 1.08005 * 119.90139 * 180.28449 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3809 0.0000 4 6 3.3288 1.2324 0.7745 5 6 3.0803 0.0129 1.6395 6 6 3.7400 -0.4714 2.7496 7 6 3.2974 -1.6251 3.3706 8 6 4.0184 -2.1535 4.5840 9 1 5.0254 -1.7379 4.6179 10 7 4.0955 -3.6185 4.5084 11 6 3.2678 -1.7535 5.8280 12 1 2.3598 -1.1743 5.7481 13 6 3.7408 -2.1261 7.0683 14 7 4.8469 -2.8311 7.1657 15 14 2.8109 -1.6298 8.6105 16 1 1.8172 -2.6802 8.9489 17 1 3.7668 -1.4717 9.7357 18 1 2.1090 -0.3428 8.3726 19 6 2.1919 -2.2932 2.8762 20 6 1.5301 -1.8145 1.7650 21 6 1.9709 -0.6530 1.1326 22 1 -0.3633 0.5143 0.8896 23 1 -0.3633 0.5134 -0.8903 24 1 -0.3633 -1.0277 0.0005 25 1 1.3206 2.0555 0.5222 26 1 2.1806 1.7285 -1.0171 27 1 3.5165 2.1114 1.3912 28 1 4.1595 1.0579 0.0907 29 1 4.6036 0.0508 3.1342 30 1 4.6305 -3.9926 5.2778 31 1 3.1739 -4.0279 4.4758 32 1 5.1794 -3.0935 8.0383 33 1 1.8453 -3.1930 3.3626 34 1 0.6647 -2.3383 1.3866 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259862405.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:42 Heat of formation + Delta-G solvation = 12.950958 kcal Electronic energy + Delta-G solvation = -15959.347687 eV Core-core repulsion = 13469.767033 eV Total energy + Delta-G solvation = -2489.580654 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.52553 -38.43624 -35.86441 -33.67171 -33.20076 -30.59274 -29.53091 -27.92925 -26.53906 -24.28424 -23.55968 -21.83168 -20.86214 -18.56521 -17.56410 -17.07518 -16.88185 -16.45573 -16.10049 -15.06337 -14.87993 -14.69162 -14.40952 -14.14484 -13.65674 -13.58109 -13.35429 -13.15463 -12.82678 -12.71385 -12.65162 -12.36453 -12.25991 -11.93039 -11.68257 -11.40974 -10.77860 -10.54788 -9.61473 -9.22021 -8.50781 -8.07813 -6.38705 0.57736 0.60583 1.35833 1.37691 1.47907 2.35148 2.76509 3.02024 3.07360 3.69029 3.77434 4.12563 4.19022 4.30474 4.36679 4.51678 4.59977 4.65675 4.70134 4.78187 4.79764 4.93815 5.02564 5.05477 5.12355 5.30046 5.55508 5.58279 5.65884 5.79838 5.97597 6.10675 6.16150 6.39846 6.63700 6.92571 7.11569 7.37973 8.81888 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.036983 B = 0.006372 C = 0.006288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.912958 B = 4392.966463 C = 4451.640167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.487 5.487 3 C 0.049 3.951 4 C -0.081 4.081 5 C -0.153 4.153 6 C -0.104 4.104 7 C -0.072 4.072 8 C 0.248 3.752 9 H 0.008 0.992 10 N -0.842 5.842 11 C -0.557 4.557 12 H 0.045 0.955 13 C 0.022 3.978 14 N -0.916 5.916 15 Si 0.959 3.041 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.275 1.275 19 C -0.097 4.097 20 C -0.137 4.137 21 C 0.063 3.937 22 H 0.032 0.968 23 H 0.097 0.903 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.118 0.882 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.109 0.891 30 H 0.345 0.655 31 H 0.318 0.682 32 H 0.268 0.732 33 H 0.120 0.880 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.691 6.976 -12.192 16.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.203 5.203 3 C -0.077 4.077 4 C -0.118 4.118 5 C -0.156 4.156 6 C -0.123 4.123 7 C -0.073 4.073 8 C 0.137 3.863 9 H 0.026 0.974 10 N -0.371 5.371 11 C -0.597 4.597 12 H 0.063 0.937 13 C -0.179 4.179 14 N -0.556 5.556 15 Si 0.785 3.215 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.199 1.199 19 C -0.116 4.116 20 C -0.158 4.158 21 C -0.034 4.034 22 H 0.051 0.949 23 H 0.116 0.884 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.136 0.864 27 H 0.108 0.892 28 H 0.111 0.889 29 H 0.127 0.873 30 H 0.159 0.841 31 H 0.129 0.871 32 H 0.077 0.923 33 H 0.138 0.862 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.066 6.805 -13.298 16.525 hybrid contribution -0.763 0.309 2.803 2.921 sum -7.829 7.114 -10.495 14.902 Atomic orbital electron populations 1.22618 0.84892 1.03388 1.02108 1.60710 1.10136 1.15228 1.34188 1.23373 0.94563 0.87256 1.02507 1.21355 0.98794 0.94810 0.96857 1.20733 0.98321 0.99761 0.96759 1.20304 1.00175 0.96424 0.95407 1.20135 0.96164 0.94890 0.96137 1.17728 0.93003 0.86762 0.88760 0.97399 1.59488 1.19421 1.06656 1.51519 1.22033 1.09955 1.35222 0.92489 0.93686 1.25760 0.95505 0.94735 1.01855 1.69852 1.21919 1.38299 1.25516 0.85541 0.78445 0.78661 0.78870 1.19810 1.20545 1.19942 1.20697 0.95163 0.99664 0.96035 1.20534 1.01953 0.96584 0.96715 1.19700 0.96865 0.96115 0.90756 0.94920 0.88437 0.90731 0.91512 0.86393 0.89246 0.88926 0.87276 0.84097 0.87149 0.92273 0.86235 0.84659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.16 127.69 1.17 1.50 16 2 N -0.49 -12.72 5.31 -713.40 -3.79 -16.51 16 3 C 0.05 1.01 6.91 86.65 0.60 1.61 16 4 C -0.08 -2.03 7.04 30.67 0.22 -1.82 16 5 C -0.15 -5.36 6.23 -19.49 -0.12 -5.48 16 6 C -0.10 -4.34 9.66 22.21 0.21 -4.13 16 7 C -0.07 -3.29 4.90 -19.83 -0.10 -3.39 16 8 C 0.25 13.02 2.95 43.42 0.13 13.15 16 9 H 0.01 0.47 8.01 -2.39 -0.02 0.45 16 10 N -0.84 -42.03 9.02 -174.96 -1.58 -43.61 16 11 C -0.56 -30.96 8.70 25.60 0.22 -30.74 16 12 H 0.04 2.54 7.74 -2.91 -0.02 2.51 16 13 C 0.02 1.18 5.38 84.65 0.46 1.63 16 14 N -0.92 -51.55 11.54 21.45 0.25 -51.30 16 15 Si 0.96 43.36 29.54 68.60 2.03 45.39 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 19 C -0.10 -3.94 9.27 22.21 0.21 -3.74 16 20 C -0.14 -4.77 9.53 22.47 0.21 -4.56 16 21 C 0.06 2.10 5.95 38.29 0.23 2.33 16 22 H 0.03 0.68 8.09 -2.39 -0.02 0.66 16 23 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.07 1.48 7.31 -2.39 -0.02 1.46 16 25 H 0.07 1.25 7.84 -2.39 -0.02 1.23 16 26 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 27 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.11 4.51 8.04 -2.91 -0.02 4.48 16 30 H 0.34 18.32 7.08 -89.69 -0.63 17.69 16 31 H 0.32 14.90 7.34 -89.69 -0.66 14.24 16 32 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 33 H 0.12 4.76 6.67 -2.91 -0.02 4.74 16 34 H 0.14 3.90 7.38 -2.91 -0.02 3.88 16 Total: -1.00 -62.18 278.78 0.16 -62.02 By element: Atomic # 1 Polarization: 37.83 SS G_CDS: -0.18 Total: 37.65 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 3.44 Total: -33.64 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -5.12 Total: -111.42 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -62.18 0.16 -62.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259862405.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.970 kcal (2) G-P(sol) polarization free energy of solvation -62.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds