Wall clock time and date at job start Mon Mar 30 2020 03:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47914 * 110.99818 * 2 1 4 4 C 1.54597 * 102.61840 * 149.18680 * 3 2 1 5 5 C 1.51571 * 102.85188 * 334.51044 * 4 3 2 6 6 C 1.37915 * 131.56211 * 196.11359 * 5 4 3 7 7 C 1.38306 * 120.08096 * 179.34345 * 6 5 4 8 8 C 1.50707 * 120.05666 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.47074 * 20.01768 * 8 7 6 10 10 N 1.46902 * 109.46910 * 140.02385 * 8 7 6 11 11 C 1.50701 * 109.47024 * 260.01946 * 8 7 6 12 12 H 1.08004 * 119.99802 * 0.02562 * 11 8 7 13 13 C 1.37875 * 120.00140 * 180.02562 * 11 8 7 14 14 N 1.31513 * 120.00241 * 180.02562 * 13 11 8 15 15 Si 1.86805 * 119.99714 * 359.97438 * 13 11 8 16 16 H 1.48491 * 109.47018 * 90.00172 * 15 13 11 17 17 H 1.48502 * 109.47127 * 210.00298 * 15 13 11 18 18 H 1.48503 * 109.47165 * 330.00134 * 15 13 11 19 19 C 1.38300 * 119.88463 * 359.97438 * 7 6 5 20 20 C 1.37915 * 120.26415 * 0.13941 * 19 7 6 21 21 C 1.38964 * 107.95708 * 15.76742 * 5 4 3 22 22 H 1.08996 * 109.47325 * 300.05360 * 1 2 3 23 23 H 1.08996 * 109.47110 * 60.06080 * 1 2 3 24 24 H 1.09006 * 109.47049 * 180.02562 * 1 2 3 25 25 H 1.08994 * 110.77975 * 30.90390 * 3 2 1 26 26 H 1.09002 * 110.94206 * 267.53985 * 3 2 1 27 27 H 1.09006 * 110.73780 * 216.17339 * 4 3 2 28 28 H 1.09004 * 110.89515 * 92.92476 * 4 3 2 29 29 H 1.08001 * 119.96345 * 359.31786 * 6 5 4 30 30 H 1.00904 * 110.99800 * 296.04275 * 10 8 7 31 31 H 1.00901 * 111.00199 * 59.99443 * 10 8 7 32 32 H 0.96998 * 119.99653 * 179.97438 * 14 13 11 33 33 H 1.08002 * 119.87162 * 180.41814 * 19 7 6 34 34 H 1.08001 * 119.90252 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3809 0.0000 4 6 3.3297 1.2319 0.7728 5 6 3.0829 0.0112 1.6367 6 6 3.7439 -0.4735 2.7459 7 6 3.2991 -1.6248 3.3698 8 6 4.0221 -2.1543 4.5815 9 1 4.6157 -1.3565 5.0278 10 7 3.0428 -2.6430 5.5614 11 6 4.9291 -3.2856 4.1707 12 1 4.9774 -3.5903 3.1357 13 6 5.6972 -3.9315 5.1161 14 7 6.4890 -4.9184 4.7576 15 14 5.6141 -3.4038 6.9062 16 1 4.5533 -4.1763 7.6011 17 1 6.9226 -3.6614 7.5594 18 1 5.3004 -1.9542 6.9809 19 6 2.1896 -2.2894 2.8799 20 6 1.5264 -1.8102 1.7697 21 6 1.9709 -0.6525 1.1329 22 1 -0.3634 0.5146 0.8895 23 1 -0.3633 0.5129 -0.8905 24 1 -0.3633 -1.0277 0.0005 25 1 1.3213 2.0552 0.5234 26 1 2.1794 1.7290 -1.0171 27 1 3.5178 2.1102 1.3904 28 1 4.1597 1.0586 0.0878 29 1 4.6103 0.0464 3.1275 30 1 2.4641 -1.8894 5.9009 31 1 2.4797 -3.3838 5.1712 32 1 7.0296 -5.3725 5.4227 33 1 1.8383 -3.1847 3.3713 34 1 0.6608 -2.3341 1.3918 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259862411.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:44 Heat of formation + Delta-G solvation = 15.576302 kcal Electronic energy + Delta-G solvation = -15988.198991 eV Core-core repulsion = 13498.732180 eV Total energy + Delta-G solvation = -2489.466810 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.60914 -38.62724 -35.71988 -33.88733 -33.62501 -30.68751 -29.59263 -28.25924 -26.57184 -24.13734 -23.57090 -21.88753 -20.87432 -18.96894 -17.57703 -17.11850 -16.69974 -16.50426 -16.21523 -15.63393 -15.08978 -14.77289 -14.40308 -14.21753 -13.86526 -13.60401 -13.51701 -13.32646 -12.87794 -12.69828 -12.44355 -12.30299 -12.18857 -11.86666 -11.63536 -11.38205 -10.75212 -10.59044 -9.68439 -9.40419 -8.50768 -8.23983 -6.37442 0.48234 0.51163 1.51209 1.58324 1.72070 2.53262 2.69961 2.92703 3.10902 3.63653 3.73589 4.06618 4.13470 4.21079 4.24566 4.32506 4.46323 4.54853 4.62688 4.64054 4.74741 4.90041 4.94820 4.99655 5.02137 5.17413 5.39448 5.51039 5.54170 5.75327 5.87393 6.04847 6.14312 6.31110 6.48750 6.76725 7.00042 7.39248 8.89393 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.045975 B = 0.006426 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.880169 B = 4356.407708 C = 4485.363312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.492 5.492 3 C 0.049 3.951 4 C -0.082 4.082 5 C -0.154 4.154 6 C -0.096 4.096 7 C -0.113 4.113 8 C 0.229 3.771 9 H 0.041 0.959 10 N -0.842 5.842 11 C -0.514 4.514 12 H 0.024 0.976 13 C 0.025 3.975 14 N -0.950 5.950 15 Si 1.004 2.996 16 H -0.275 1.275 17 H -0.324 1.324 18 H -0.260 1.260 19 C -0.103 4.103 20 C -0.139 4.139 21 C 0.069 3.931 22 H 0.038 0.962 23 H 0.096 0.904 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.114 0.886 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.117 0.883 30 H 0.333 0.667 31 H 0.340 0.660 32 H 0.265 0.735 33 H 0.123 0.877 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.215 14.282 -6.925 20.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.207 5.207 3 C -0.076 4.076 4 C -0.119 4.119 5 C -0.157 4.157 6 C -0.115 4.115 7 C -0.116 4.116 8 C 0.119 3.881 9 H 0.059 0.941 10 N -0.373 5.373 11 C -0.552 4.552 12 H 0.043 0.957 13 C -0.173 4.173 14 N -0.590 5.590 15 Si 0.833 3.167 16 H -0.201 1.201 17 H -0.254 1.254 18 H -0.185 1.185 19 C -0.122 4.122 20 C -0.160 4.160 21 C -0.029 4.029 22 H 0.057 0.943 23 H 0.114 0.886 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.132 0.868 27 H 0.114 0.886 28 H 0.105 0.895 29 H 0.135 0.865 30 H 0.146 0.854 31 H 0.154 0.846 32 H 0.073 0.927 33 H 0.141 0.859 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.391 13.748 -6.976 19.779 hybrid contribution -0.403 0.058 0.576 0.705 sum -12.794 13.807 -6.401 19.881 Atomic orbital electron populations 1.22614 0.84629 1.03346 1.02339 1.60679 1.10393 1.15493 1.34159 1.23369 0.94624 0.87106 1.02522 1.21365 0.98625 0.95007 0.96941 1.20804 0.98227 0.99859 0.96851 1.20409 0.99269 0.96334 0.95492 1.20854 0.96084 0.94872 0.99784 1.18272 0.89975 0.93979 0.85865 0.94135 1.59076 1.22094 1.14720 1.41419 1.21003 1.23227 1.16957 0.94005 0.95717 1.25898 0.93200 0.93829 1.04420 1.70097 1.28003 1.24527 1.36332 0.84794 0.73972 0.79767 0.78126 1.20102 1.25405 1.18482 1.20757 0.95654 0.99104 0.96642 1.20533 1.02196 0.96575 0.96710 1.19763 0.96763 0.96051 0.90329 0.94307 0.88584 0.90926 0.90923 0.86758 0.88589 0.89531 0.86453 0.85421 0.84564 0.92669 0.85945 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.16 127.69 1.17 1.48 16 2 N -0.49 -12.19 5.31 -713.40 -3.79 -15.98 16 3 C 0.05 0.93 6.91 86.65 0.60 1.53 16 4 C -0.08 -1.91 7.03 30.67 0.22 -1.69 16 5 C -0.15 -5.01 6.23 -19.49 -0.12 -5.13 16 6 C -0.10 -3.62 9.66 22.21 0.21 -3.41 16 7 C -0.11 -4.65 4.89 -19.83 -0.10 -4.75 16 8 C 0.23 10.64 2.35 43.43 0.10 10.74 16 9 H 0.04 1.94 7.07 -2.39 -0.02 1.92 16 10 N -0.84 -34.22 6.59 -174.94 -1.15 -35.37 16 11 C -0.51 -29.84 9.29 25.60 0.24 -29.60 16 12 H 0.02 1.62 7.98 -2.91 -0.02 1.60 16 13 C 0.03 1.50 5.47 84.65 0.46 1.96 16 14 N -0.95 -60.89 13.96 21.45 0.30 -60.59 16 15 Si 1.00 49.78 26.03 68.60 1.79 51.56 16 16 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 17 H -0.32 -16.17 7.11 99.48 0.71 -15.47 16 18 H -0.26 -12.16 6.54 99.48 0.65 -11.50 16 19 C -0.10 -3.81 9.28 22.21 0.21 -3.61 16 20 C -0.14 -4.53 9.53 22.47 0.21 -4.31 16 21 C 0.07 2.15 5.95 38.28 0.23 2.37 16 22 H 0.04 0.69 8.09 -2.39 -0.02 0.67 16 23 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.07 1.33 7.31 -2.38 -0.02 1.32 16 25 H 0.07 1.15 7.84 -2.39 -0.02 1.14 16 26 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.12 4.27 8.04 -2.91 -0.02 4.25 16 30 H 0.33 11.31 9.06 -89.69 -0.81 10.50 16 31 H 0.34 13.29 7.34 -89.69 -0.66 12.64 16 32 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 33 H 0.12 4.38 6.65 -2.91 -0.02 4.36 16 34 H 0.13 3.64 7.37 -2.91 -0.02 3.62 16 Total: -1.00 -70.66 276.01 0.16 -70.50 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -0.41 Total: 24.28 kcal Atomic # 6 Polarization: -37.83 SS G_CDS: 3.43 Total: -34.40 kcal Atomic # 7 Polarization: -107.29 SS G_CDS: -4.64 Total: -111.94 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 1.79 Total: 51.56 kcal Total: -70.66 0.16 -70.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259862411.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.075 kcal (2) G-P(sol) polarization free energy of solvation -70.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds