Wall clock time and date at job start Mon Mar 30 2020 03:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29896 * 1 3 3 Si 1.86797 * 120.00190 * 2 1 4 4 H 1.48499 * 109.47351 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46963 * 299.99475 * 3 2 1 6 6 H 1.48501 * 109.47337 * 59.99773 * 3 2 1 7 7 C 1.41627 * 119.99654 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99619 * 194.15176 * 7 2 1 9 9 C 1.38928 * 120.00265 * 14.15267 * 7 2 1 10 10 C 1.47071 * 120.83871 * 23.93392 * 9 7 2 11 11 C 1.33932 * 119.52835 * 180.02562 * 10 9 7 12 12 N 1.37679 * 121.21895 * 359.93106 * 11 10 9 13 13 C 1.35009 * 132.02305 * 180.02562 * 12 11 10 14 14 N 1.31452 * 109.81990 * 180.02562 * 13 12 11 15 15 C 1.32505 * 110.10635 * 0.02562 * 14 13 12 16 16 N 1.48026 * 126.41892 * 180.02562 * 15 14 13 17 17 O 1.31705 * 119.99827 * 0.02562 * 16 15 14 18 18 O 1.31698 * 120.00031 * 180.02562 * 16 15 14 19 19 C 1.38290 * 121.18231 * 0.07113 * 12 11 10 20 20 C 1.38303 * 120.92297 * 359.96729 * 19 12 11 21 21 H 0.97000 * 120.00007 * 0.02562 * 1 2 3 22 22 H 1.08009 * 120.23213 * 359.97438 * 10 9 7 23 23 H 1.07994 * 119.39159 * 180.02562 * 11 10 9 24 24 H 1.08000 * 125.08937 * 0.02562 * 13 12 11 25 25 H 1.08004 * 120.58540 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2990 0.0000 0.0000 3 14 2.2330 1.6177 0.0000 4 1 3.6930 1.3463 0.0006 5 1 1.8743 2.3963 -1.2126 6 1 1.8743 2.3965 1.2125 7 6 2.0070 -1.2266 0.0005 8 1 3.0624 -1.2406 0.2292 9 6 1.3440 -2.4116 -0.2931 10 6 0.1083 -2.4064 -1.0906 11 6 -0.5098 -3.5642 -1.3577 12 7 -0.0091 -4.7625 -0.9004 13 6 -0.4425 -6.0339 -1.0364 14 7 0.3772 -6.8529 -0.4157 15 6 1.3651 -6.1706 0.1448 16 7 2.4865 -6.7330 0.9306 17 8 2.5662 -8.0329 1.1269 18 8 3.4043 -5.9335 1.4335 19 6 1.1496 -4.8137 -0.1473 20 6 1.8429 -3.6596 0.1696 21 1 -0.4850 0.8400 -0.0004 22 1 -0.2983 -1.4755 -1.4575 23 1 -1.4168 -3.5579 -1.9438 24 1 -1.3297 -6.3332 -1.5745 25 1 2.7475 -3.7060 0.7577 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259872296.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:19 Heat of formation + Delta-G solvation = 70.587110 kcal Electronic energy + Delta-G solvation = -15412.451459 eV Core-core repulsion = 12588.277997 eV Total energy + Delta-G solvation = -2824.173463 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.49728 -38.98996 -38.36140 -36.19286 -34.67549 -33.94644 -31.74192 -30.53702 -28.46919 -26.09360 -24.12321 -23.36597 -22.19727 -20.03777 -19.10071 -18.43582 -17.78682 -17.17753 -17.08972 -16.92527 -15.81123 -15.69270 -15.19723 -15.02893 -14.06118 -13.70070 -13.30537 -13.18612 -12.76065 -12.26956 -11.97138 -11.80243 -11.73486 -11.69734 -11.46384 -11.27310 -11.17069 -10.30522 -9.43068 -8.89489 -7.04116 -1.17042 0.26841 0.62013 0.69893 1.34461 1.42028 1.58603 1.87770 1.99873 2.06598 2.13403 2.95948 3.58937 3.65078 3.84664 4.13017 4.23319 4.50610 4.63707 4.82529 4.96944 5.27755 5.37827 5.45382 5.73308 5.79671 6.01715 6.09312 6.28411 6.49984 6.89614 7.52237 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.036035 B = 0.007547 C = 0.006335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.830295 B = 3709.203542 C = 4419.035813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.033 3.967 3 Si 1.001 2.999 4 H -0.256 1.256 5 H -0.245 1.245 6 H -0.258 1.258 7 C -0.310 4.310 8 H 0.114 0.886 9 C 0.072 3.928 10 C -0.144 4.144 11 C 0.077 3.923 12 N -0.440 5.440 13 C 0.251 3.749 14 N -0.492 5.492 15 C -0.021 4.021 16 N 0.073 4.927 17 O -0.397 6.397 18 O -0.369 6.369 19 C 0.149 3.851 20 C -0.249 4.249 21 H 0.328 0.672 22 H 0.177 0.823 23 H 0.219 0.781 24 H 0.285 0.715 25 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.725 13.991 -8.118 18.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.198 4.198 3 Si 0.818 3.182 4 H -0.179 1.179 5 H -0.168 1.168 6 H -0.183 1.183 7 C -0.336 4.336 8 H 0.132 0.868 9 C 0.065 3.935 10 C -0.166 4.166 11 C -0.039 4.039 12 N -0.126 5.126 13 C -0.035 4.035 14 N -0.210 5.210 15 C -0.245 4.245 16 N 0.465 4.535 17 O -0.527 6.527 18 O -0.503 6.503 19 C 0.039 3.961 20 C -0.277 4.277 21 H 0.142 0.858 22 H 0.193 0.807 23 H 0.236 0.764 24 H 0.300 0.700 25 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.047 12.917 -8.018 17.692 hybrid contribution 1.081 0.563 0.743 1.428 sum -7.965 13.480 -7.275 17.265 Atomic orbital electron populations 1.69193 1.09593 1.35145 1.19208 1.27470 0.95966 1.05251 0.91106 0.84789 0.79461 0.73557 0.80389 1.17901 1.16790 1.18253 1.20961 0.98772 0.90929 1.22900 0.86801 1.19208 0.92479 0.91644 0.90181 1.22495 0.96196 0.98147 0.99767 1.22256 1.00835 0.80958 0.99835 1.42735 1.19621 1.08502 1.41756 1.26096 1.00732 0.76198 1.00443 1.69014 1.03783 1.34882 1.13342 1.19777 0.97831 0.88981 1.17937 1.48530 1.01917 1.01314 1.01748 1.96048 1.88418 0.92693 1.75589 1.96035 1.36693 1.56265 1.61340 1.18438 0.90075 0.92251 0.95321 1.20906 1.05009 0.89961 1.11811 0.85816 0.80651 0.76415 0.70027 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -20.39 10.70 22.12 0.24 -20.15 15 2 C 0.03 0.97 5.28 85.82 0.45 1.42 15 3 Si 1.00 21.55 29.59 68.60 2.03 23.58 15 4 H -0.26 -5.95 7.11 99.48 0.71 -5.25 15 5 H -0.24 -4.78 7.11 99.48 0.71 -4.08 15 6 H -0.26 -5.57 7.11 99.48 0.71 -4.86 15 7 C -0.31 -11.03 9.08 23.27 0.21 -10.82 15 8 H 0.11 3.97 7.91 -2.91 -0.02 3.95 15 9 C 0.07 2.82 5.74 -19.83 -0.11 2.70 15 10 C -0.14 -4.48 8.81 23.61 0.21 -4.27 15 11 C 0.08 2.07 10.90 82.79 0.90 2.97 15 12 N -0.44 -15.60 2.95 -351.14 -1.04 -16.64 15 13 C 0.25 8.20 12.69 179.99 2.28 10.49 15 14 N -0.49 -23.26 11.16 -187.03 -2.09 -25.34 15 15 C -0.02 -1.17 8.29 130.00 1.08 -0.09 15 16 N 0.07 4.65 4.99 -48.24 -0.24 4.41 15 17 O -0.40 -26.34 19.97 3.51 0.07 -26.27 15 18 O -0.37 -23.68 18.46 3.52 0.06 -23.62 15 19 C 0.15 7.07 6.70 38.68 0.26 7.33 15 20 C -0.25 -11.68 9.61 23.26 0.22 -11.46 15 21 H 0.33 7.52 8.28 -92.71 -0.77 6.75 15 22 H 0.18 4.76 6.16 -2.91 -0.02 4.74 15 23 H 0.22 3.02 8.06 -2.91 -0.02 3.00 15 24 H 0.28 4.71 8.06 -2.91 -0.02 4.68 15 25 H 0.12 5.94 6.97 -2.91 -0.02 5.92 15 Total: -1.00 -76.69 241.64 5.79 -70.91 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 1.25 Total: 14.86 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 5.50 Total: -1.72 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -3.13 Total: -57.73 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: 0.13 Total: -49.89 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: 2.03 Total: 23.58 kcal Total: -76.69 5.79 -70.91 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259872296.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.492 kcal (2) G-P(sol) polarization free energy of solvation -76.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds