Wall clock time and date at job start Mon Mar 30 2020 03:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30704 * 1 3 3 Si 1.86798 * 119.99651 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99606 * 3 2 1 5 5 H 1.48499 * 109.46963 * 30.00508 * 3 2 1 6 6 H 1.48504 * 109.46680 * 149.99855 * 3 2 1 7 7 C 1.40139 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99503 * 179.97438 * 7 2 1 9 9 C 1.40723 * 120.00058 * 0.28133 * 7 2 1 10 10 C 1.41164 * 120.07719 * 179.72490 * 9 7 2 11 11 N 1.31376 * 119.90555 * 180.02562 * 10 9 7 12 12 C 1.33621 * 120.06875 * 359.97438 * 11 10 9 13 13 C 1.47137 * 119.91891 * 180.02562 * 12 11 10 14 14 N 1.30610 * 125.46370 * 359.97438 * 13 12 11 15 15 C 1.30823 * 117.09648 * 179.97438 * 14 13 12 16 16 C 1.34364 * 115.80711 * 0.02562 * 15 14 13 17 17 S 1.76173 * 125.45754 * 179.69569 * 13 12 11 18 18 C 1.40439 * 120.15858 * 0.02562 * 12 11 10 19 19 N 1.31374 * 120.09310 * 359.67999 * 18 12 11 20 20 H 0.96996 * 120.00349 * 359.97438 * 1 2 3 21 21 H 1.07999 * 120.05156 * 359.97157 * 10 9 7 22 22 H 1.07992 * 122.09756 * 180.02562 * 15 14 13 23 23 H 1.08007 * 125.90809 * 179.97438 * 16 15 14 24 24 H 1.07994 * 119.95637 * 179.97438 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4885 2.0465 -1.4001 5 1 1.4383 2.6526 0.7001 6 1 3.5385 1.4402 0.7001 7 6 2.0077 -1.2137 0.0005 8 1 3.0877 -1.2136 0.0001 9 6 1.3041 -2.4323 -0.0049 10 6 2.0083 -3.6558 -0.0102 11 7 1.3480 -4.7916 -0.0158 12 6 0.0118 -4.7892 -0.0159 13 6 -0.7244 -6.0631 -0.0216 14 7 -0.1824 -7.2515 -0.0273 15 6 -0.9948 -8.2769 -0.0313 16 6 -2.3062 -7.9842 -0.0296 17 16 -2.4782 -6.2300 -0.0149 18 6 -0.6916 -3.5736 -0.0106 19 7 -0.0377 -2.4342 0.0008 20 1 -0.4850 0.8400 0.0004 21 1 3.0883 -3.6582 -0.0106 22 1 -0.6341 -9.2947 -0.0356 23 1 -3.1150 -8.7000 -0.0327 24 1 -1.7715 -3.5755 -0.0112 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259897832.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:29 Heat of formation + Delta-G solvation = 82.065284 kcal Electronic energy + Delta-G solvation = -12991.436435 eV Core-core repulsion = 10610.513574 eV Total energy + Delta-G solvation = -2380.922861 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.22635 -38.40448 -34.46546 -32.27893 -31.28437 -29.18015 -26.78765 -24.22097 -23.01820 -21.89941 -19.10535 -17.82311 -17.68541 -16.13467 -15.40828 -15.13559 -14.37478 -14.18848 -13.96079 -12.93682 -12.84808 -12.75702 -11.97004 -11.76011 -11.56844 -11.11273 -10.90197 -10.56252 -10.18605 -9.69022 -9.40322 -9.02415 -8.97749 -8.70431 -7.71143 -7.62057 -6.84425 -4.97404 0.99616 1.90167 2.31417 2.33873 2.82583 2.85034 2.89355 2.96897 3.59290 3.64279 4.40080 4.85390 5.50439 5.52791 5.59847 5.75619 5.93036 6.09977 6.16849 6.56172 6.63570 6.77578 6.95504 7.32481 7.67285 8.03416 8.28753 8.44724 9.05205 9.55325 9.74011 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.067319 B = 0.006046 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.827910 B = 4629.806721 C = 5035.780784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.682 5.682 2 C 0.053 3.947 3 Si 0.922 3.078 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.362 4.362 8 H 0.101 0.899 9 C 0.194 3.806 10 C -0.040 4.040 11 N -0.383 5.383 12 C -0.082 4.082 13 C 0.205 3.795 14 N -0.492 5.492 15 C 0.056 3.944 16 C -0.300 4.300 17 S 0.033 5.967 18 C 0.136 3.864 19 N -0.458 5.458 20 H 0.285 0.715 21 H 0.142 0.858 22 H 0.163 0.837 23 H 0.166 0.834 24 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.791 -2.504 -0.024 3.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.301 5.301 2 C -0.177 4.177 3 Si 0.744 3.256 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.393 4.393 8 H 0.119 0.881 9 C 0.070 3.930 10 C -0.219 4.219 11 N -0.094 5.094 12 C -0.219 4.219 13 C -0.067 4.067 14 N -0.207 5.207 15 C -0.097 4.097 16 C -0.440 4.440 17 S 0.287 5.713 18 C -0.040 4.040 19 N -0.173 5.173 20 H 0.097 0.903 21 H 0.159 0.841 22 H 0.180 0.820 23 H 0.184 0.816 24 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.376 -1.789 -0.001 3.821 hybrid contribution 0.412 -0.353 -0.024 0.543 sum -2.964 -2.143 -0.025 3.658 Atomic orbital electron populations 1.70063 1.07711 1.29529 1.22780 1.26387 0.95223 1.02228 0.93832 0.86057 0.80476 0.79211 0.79829 1.18796 1.19567 1.17871 1.19964 0.95399 0.89224 1.34724 0.88137 1.19560 0.89547 0.93628 0.90222 1.23286 0.99444 0.88319 1.10856 1.67720 1.06951 1.30198 1.04573 1.18563 0.90575 0.88506 1.24268 1.25537 0.90213 0.94137 0.96823 1.66618 1.36552 0.97341 1.20156 1.21698 0.88522 0.98919 1.00580 1.26757 1.00986 0.97167 1.19071 1.84722 1.10820 1.03213 1.72501 1.23416 0.99475 0.88776 0.92364 1.69583 1.07557 1.23892 1.16291 0.90310 0.84068 0.82005 0.81635 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -16.07 11.46 55.56 0.64 -15.44 14 2 C 0.05 1.18 5.50 -17.32 -0.10 1.08 14 3 Si 0.92 15.98 29.56 -169.99 -5.02 10.95 14 4 H -0.26 -4.53 7.11 56.52 0.40 -4.13 14 5 H -0.27 -4.63 7.11 56.52 0.40 -4.23 14 6 H -0.26 -4.32 7.11 56.52 0.40 -3.92 14 7 C -0.36 -8.46 9.13 -37.93 -0.35 -8.80 14 8 H 0.10 2.09 7.85 -52.49 -0.41 1.68 14 9 C 0.19 4.90 6.54 -84.79 -0.55 4.35 14 10 C -0.04 -0.96 10.97 -16.64 -0.18 -1.14 14 11 N -0.38 -9.71 10.39 -9.01 -0.09 -9.80 14 12 C -0.08 -1.99 6.76 -82.65 -0.56 -2.55 14 13 C 0.21 4.51 7.41 -14.46 -0.11 4.40 14 14 N -0.49 -10.67 10.50 -11.46 -0.12 -10.79 14 15 C 0.06 0.97 11.26 -19.35 -0.22 0.76 14 16 C -0.30 -4.67 11.38 29.36 0.33 -4.34 14 17 S 0.03 0.58 22.35 -107.50 -2.40 -1.82 14 18 C 0.14 3.25 10.78 -16.92 -0.18 3.07 14 19 N -0.46 -11.88 8.00 -10.63 -0.09 -11.96 14 20 H 0.29 5.96 8.29 -40.82 -0.34 5.63 14 21 H 0.14 3.00 8.06 -52.49 -0.42 2.57 14 22 H 0.16 2.24 8.06 -52.49 -0.42 1.82 14 23 H 0.17 1.98 8.06 -52.48 -0.42 1.56 14 24 H 0.13 2.78 7.27 -52.49 -0.38 2.40 14 LS Contribution 240.90 15.07 3.63 3.63 Total: -1.00 -28.46 240.90 -6.57 -35.03 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -1.20 Total: 3.37 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -1.91 Total: -3.17 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.34 Total: -47.99 kcal Atomic # 14 Polarization: 15.98 SS G_CDS: -5.02 Total: 10.95 kcal Atomic # 16 Polarization: 0.58 SS G_CDS: -2.40 Total: -1.82 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -28.46 -6.57 -35.03 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259897832.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.092 kcal (2) G-P(sol) polarization free energy of solvation -28.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds