Wall clock time and date at job start Mon Mar 30 2020 03:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30603 * 1 3 3 Si 1.86798 * 120.00170 * 2 1 4 4 H 1.48499 * 109.47048 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47195 * 119.99828 * 3 2 1 6 6 H 1.48496 * 109.47410 * 240.00040 * 3 2 1 7 7 C 1.40396 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99947 * 3.91788 * 7 2 1 9 9 C 1.39893 * 120.00016 * 183.92460 * 7 2 1 10 10 O 1.35166 * 126.38675 * 6.19448 * 9 7 2 11 11 N 1.41506 * 108.02559 * 179.97438 * 10 9 7 12 12 C 1.30937 * 108.80107 * 359.97438 * 11 10 9 13 13 O 1.35755 * 125.77133 * 180.02562 * 12 11 10 14 14 C 1.39327 * 126.38756 * 185.88550 * 9 7 2 15 15 Br 1.89099 * 126.25295 * 0.02766 * 14 9 7 16 16 H 0.97001 * 120.00176 * 174.83523 * 1 2 3 17 17 H 0.96704 * 114.00002 * 89.97513 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 1.2751 2.7464 0.0006 5 1 3.0938 1.6964 1.2125 6 1 3.0938 1.6964 -1.2125 7 6 2.0080 -1.2159 -0.0005 8 1 1.4699 -2.1501 -0.0649 9 6 3.4045 -1.2174 0.0824 10 8 4.1969 -0.1411 0.2845 11 7 5.5408 -0.5839 0.3014 12 6 5.5604 -1.8800 0.1168 13 8 6.6717 -2.6585 0.0721 14 6 4.2375 -2.3293 -0.0221 15 35 3.6871 -4.1164 -0.3031 16 1 -0.4850 -0.8366 -0.0756 17 1 6.9414 -3.0088 0.9322 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259904806.mol2 17 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:40 Heat of formation + Delta-G solvation = -20.760436 kcal Electronic energy + Delta-G solvation = -9539.791629 eV Core-core repulsion = 7326.670658 eV Total energy + Delta-G solvation = -2213.120971 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 232.947 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -40.13465 -36.95423 -34.30514 -31.47388 -30.67638 -28.74044 -25.31063 -21.45340 -20.01457 -19.03286 -16.86662 -15.57770 -14.86109 -14.14510 -13.80324 -13.36118 -13.14617 -12.19316 -11.47634 -11.24339 -10.48520 -10.38428 -9.92992 -9.73794 -9.59747 -9.22188 -9.02382 -7.97421 -7.81512 -5.39521 2.37192 2.87372 3.06019 3.11632 3.35576 3.47865 3.78710 4.15798 4.61704 5.03918 6.04900 6.45683 6.68417 6.93215 7.51982 7.60418 7.93798 8.08126 8.56899 9.42590 Molecular weight = 232.95amu Principal moments of inertia in cm(-1) A = 0.037748 B = 0.014430 C = 0.010515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.584955 B = 1939.945931 C = 2662.263986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.045 3.955 3 Si 1.061 2.939 4 H -0.274 1.274 5 H -0.250 1.250 6 H -0.262 1.262 7 C -0.435 4.435 8 H 0.114 0.886 9 C 0.227 3.773 10 O -0.120 6.120 11 N -0.414 5.414 12 C 0.333 3.667 13 O -0.465 6.465 14 C -0.426 4.426 15 Br -0.065 7.065 16 H 0.297 0.703 17 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.852 -4.668 0.960 5.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.182 4.182 3 Si 0.884 3.116 4 H -0.200 1.200 5 H -0.175 1.175 6 H -0.187 1.187 7 C -0.465 4.465 8 H 0.132 0.868 9 C 0.168 3.832 10 O -0.123 6.123 11 N -0.187 5.187 12 C 0.128 3.872 13 O -0.271 6.271 14 C -0.518 4.518 15 Br 0.016 6.984 16 H 0.109 0.891 17 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 3.018 -2.542 0.519 3.980 hybrid contribution -0.156 -2.482 0.317 2.507 sum 2.863 -5.024 0.836 5.843 Atomic orbital electron populations 1.70489 1.07840 1.34012 1.25874 1.27737 0.95785 1.05162 0.89495 0.83526 0.74594 0.72088 0.81376 1.19982 1.17539 1.18657 1.20459 0.87984 0.98019 1.39991 0.86795 1.19785 0.91747 0.84459 0.87173 1.89023 1.13912 1.28481 1.80916 1.80349 0.91318 1.10180 1.36893 1.20198 0.85309 0.89237 0.92458 1.84704 1.42091 1.65407 1.34854 1.22008 0.92005 0.91288 1.46470 1.96184 1.91459 1.13598 1.97134 0.89115 0.74842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.20 13.64 55.57 0.76 -17.44 13 2 C 0.05 1.09 5.52 -17.26 -0.10 1.00 13 3 Si 1.06 23.09 25.98 -169.99 -4.42 18.68 13 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 13 5 H -0.25 -5.51 6.80 56.52 0.38 -5.13 13 6 H -0.26 -5.80 7.11 56.52 0.40 -5.40 13 7 C -0.44 -10.91 9.58 -38.15 -0.37 -11.28 13 8 H 0.11 2.85 7.80 -52.49 -0.41 2.44 13 9 C 0.23 5.83 6.59 -38.56 -0.25 5.58 13 10 O -0.12 -3.12 7.60 6.61 0.05 -3.07 13 11 N -0.41 -10.46 12.93 30.51 0.39 -10.06 13 12 C 0.33 7.79 8.42 -17.12 -0.14 7.65 13 13 O -0.47 -8.99 13.65 -18.98 -0.26 -9.25 13 14 C -0.43 -10.36 6.68 -38.36 -0.26 -10.62 13 15 Br -0.07 -1.36 33.63 -68.01 -2.29 -3.65 13 16 H 0.30 6.74 8.72 -40.82 -0.36 6.38 13 17 H 0.40 5.41 9.06 45.56 0.41 5.82 13 LS Contribution 190.82 15.07 2.88 2.88 Total: -1.00 -27.46 190.82 -3.16 -30.63 By element: Atomic # 1 Polarization: -1.88 SS G_CDS: 0.83 Total: -1.04 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -1.12 Total: -7.67 kcal Atomic # 7 Polarization: -28.66 SS G_CDS: 1.15 Total: -27.50 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.21 Total: -12.32 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -4.42 Total: 18.68 kcal Atomic # 35 Polarization: -1.36 SS G_CDS: -2.29 Total: -3.65 kcal Total LS contribution 2.88 Total: 2.88 kcal Total: -27.46 -3.16 -30.63 kcal The number of atoms in the molecule is 17 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259904806.mol2 17 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.867 kcal (2) G-P(sol) polarization free energy of solvation -27.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds