Wall clock time and date at job start Mon Mar 30 2020 03:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86797 * 119.99969 * 2 1 4 4 H 1.48495 * 109.47371 * 239.99884 * 3 2 1 5 5 H 1.48497 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46979 * 119.99994 * 3 2 1 7 7 C 1.40031 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00344 * 180.02562 * 7 2 1 9 9 C 1.41436 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.40463 * 119.77520 * 180.02562 * 9 7 2 11 11 C 1.39315 * 118.83461 * 179.97438 * 10 9 7 12 12 C 1.48398 * 120.81986 * 179.72690 * 11 10 9 13 13 C 1.39149 * 124.06544 * 179.72906 * 12 11 10 14 14 N 1.30206 * 112.13981 * 179.77881 * 13 12 11 15 15 S 1.55940 * 108.66756 * 0.46211 * 14 13 12 16 16 N 1.31213 * 124.06548 * 0.02565 * 12 11 10 17 17 C 1.40032 * 118.35650 * 0.02562 * 11 10 9 18 18 C 1.38496 * 119.42775 * 359.97438 * 17 11 10 19 19 N 1.31484 * 121.14208 * 0.02679 * 18 17 11 20 20 H 0.96992 * 120.00081 * 359.97438 * 1 2 3 21 21 H 1.07997 * 120.58726 * 0.02562 * 10 9 7 22 22 H 1.08000 * 123.93052 * 359.97438 * 13 12 11 23 23 H 1.08003 * 120.28539 * 179.97438 * 17 11 10 24 24 H 1.07996 * 119.42913 * 179.97438 * 18 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6964 -1.2124 5 1 1.2764 2.7464 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0001 9 6 1.3004 -2.4376 -0.0005 10 6 2.0075 -3.6512 -0.0005 11 6 1.2912 -4.8462 0.0000 12 6 1.9934 -6.1535 -0.0060 13 6 1.3467 -7.3856 -0.0004 14 7 2.1864 -8.3806 -0.0123 15 16 3.6374 -7.8092 -0.0169 16 7 3.2987 -6.2867 -0.0117 17 6 -0.1077 -4.7830 0.0000 18 6 -0.7331 -3.5473 0.0000 19 7 -0.0360 -2.4324 -0.0006 20 1 -0.4850 0.8400 0.0004 21 1 3.0875 -3.6581 -0.0001 22 1 0.2731 -7.5029 0.0092 23 1 -0.6938 -5.6902 0.0000 24 1 -1.8119 -3.4986 -0.0005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259917626.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:11 Heat of formation + Delta-G solvation = 69.113116 kcal Electronic energy + Delta-G solvation = -13077.871837 eV Core-core repulsion = 10696.387329 eV Total energy + Delta-G solvation = -2381.484509 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.79860 -39.79195 -35.58920 -34.64817 -32.62946 -31.92200 -27.73546 -27.40818 -24.09719 -23.26235 -21.77569 -20.02087 -19.24375 -17.56622 -16.86798 -16.70355 -16.00202 -15.88471 -15.77100 -14.51579 -14.15859 -14.12566 -13.22130 -12.94831 -12.88191 -12.67990 -12.25407 -12.18035 -11.99611 -11.87438 -11.65182 -11.27266 -10.76479 -9.60952 -9.53191 -9.31294 -8.30631 -6.52864 -0.46120 0.50521 0.56628 0.83237 0.89936 1.41208 1.52133 1.53373 1.80184 2.23479 2.86163 3.43090 3.92978 3.95404 4.20138 4.31427 4.51116 4.79050 4.86125 4.98047 5.18041 5.39086 5.55461 5.59585 5.88396 6.10644 6.26228 6.68849 6.93402 8.16939 8.44120 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.047794 B = 0.006310 C = 0.005585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.708261 B = 4436.545796 C = 5012.405727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.025 3.975 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.469 4.469 8 H 0.084 0.916 9 C 0.224 3.776 10 C -0.252 4.252 11 C 0.027 3.973 12 C 0.098 3.902 13 C 0.055 3.945 14 N -0.587 5.587 15 S 0.720 5.280 16 N -0.602 5.602 17 C -0.278 4.278 18 C 0.109 3.891 19 N -0.515 5.515 20 H 0.281 0.719 21 H 0.099 0.901 22 H 0.233 0.767 23 H 0.148 0.852 24 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.638 -9.617 -0.001 9.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.197 4.197 3 Si 0.806 3.194 4 H -0.185 1.185 5 H -0.189 1.189 6 H -0.185 1.185 7 C -0.500 4.500 8 H 0.102 0.898 9 C 0.099 3.901 10 C -0.277 4.277 11 C 0.017 3.983 12 C -0.073 4.073 13 C -0.139 4.139 14 N -0.429 5.429 15 S 0.764 5.236 16 N -0.447 5.447 17 C -0.302 4.302 18 C -0.055 4.055 19 N -0.229 5.229 20 H 0.091 0.909 21 H 0.117 0.883 22 H 0.249 0.751 23 H 0.166 0.834 24 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.973 -9.765 -0.017 10.542 hybrid contribution -0.804 0.836 0.011 1.159 sum 3.169 -8.930 -0.006 9.475 Atomic orbital electron populations 1.70191 1.08692 1.29307 1.29197 1.26949 0.95810 1.04376 0.92567 0.85205 0.78671 0.75523 0.79965 1.18467 1.18870 1.18475 1.19935 0.94624 0.90595 1.44894 0.89834 1.18912 0.88955 0.92695 0.89544 1.21871 0.98912 0.92827 1.14112 1.17926 0.93167 0.87948 0.99301 1.21198 0.86875 0.96610 1.02568 1.24021 1.03722 0.84654 1.01522 1.72210 1.09325 1.37625 1.23708 1.78474 1.09737 0.86285 1.49067 1.72218 1.20595 1.27547 1.24379 1.21676 0.92256 0.99502 1.16775 1.23039 1.00321 0.88427 0.93734 1.68657 1.07400 1.29079 1.17751 0.90851 0.88282 0.75099 0.83444 0.83049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.36 11.46 21.84 0.25 -40.10 14 2 C 0.02 1.28 5.50 85.29 0.47 1.75 14 3 Si 0.99 38.36 29.56 68.60 2.03 40.39 14 4 H -0.26 -9.84 7.11 99.48 0.71 -9.14 14 5 H -0.26 -9.64 7.11 99.48 0.71 -8.94 14 6 H -0.26 -9.85 7.11 99.48 0.71 -9.14 14 7 C -0.47 -25.99 9.14 23.49 0.21 -25.77 14 8 H 0.08 4.40 7.85 -2.91 -0.02 4.38 14 9 C 0.22 12.54 6.55 40.20 0.26 12.81 14 10 C -0.25 -12.86 9.46 23.07 0.22 -12.64 14 11 C 0.03 1.20 5.91 -19.88 -0.12 1.08 14 12 C 0.10 3.60 6.75 42.16 0.28 3.89 14 13 C 0.05 1.58 10.98 85.15 0.94 2.51 14 14 N -0.59 -16.27 11.42 -92.62 -1.06 -17.32 14 15 S 0.72 18.56 23.69 -56.49 -1.34 17.22 14 16 N -0.60 -21.61 11.02 -80.96 -0.89 -22.50 14 17 C -0.28 -11.01 9.62 22.77 0.22 -10.79 14 18 C 0.11 4.92 11.17 84.81 0.95 5.87 14 19 N -0.52 -28.24 7.85 -189.37 -1.49 -29.73 14 20 H 0.28 13.56 8.29 -92.71 -0.77 12.79 14 21 H 0.10 5.07 7.84 -2.91 -0.02 5.05 14 22 H 0.23 5.03 7.02 -2.91 -0.02 5.01 14 23 H 0.15 4.36 6.85 -2.91 -0.02 4.34 14 24 H 0.15 5.79 8.06 -2.91 -0.02 5.76 14 Total: -1.00 -65.41 237.31 2.18 -63.23 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 1.24 Total: 10.12 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 3.43 Total: -21.30 kcal Atomic # 7 Polarization: -106.47 SS G_CDS: -3.19 Total: -109.65 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Atomic # 16 Polarization: 18.56 SS G_CDS: -1.34 Total: 17.22 kcal Total: -65.41 2.18 -63.23 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259917626.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.341 kcal (2) G-P(sol) polarization free energy of solvation -65.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds