Wall clock time and date at job start Mon Mar 30 2020 03:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29839 * 1 3 3 Si 1.86798 * 120.00199 * 2 1 4 4 H 1.48497 * 109.47079 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47115 * 300.00388 * 3 2 1 6 6 H 1.48505 * 109.46753 * 60.00477 * 3 2 1 7 7 C 1.41795 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99841 * 197.72667 * 7 2 1 9 9 C 1.37874 * 120.00435 * 17.71812 * 7 2 1 10 10 C 1.41346 * 120.11738 * 25.69391 * 9 7 2 11 11 C 1.36612 * 120.08094 * 179.97438 * 10 9 7 12 12 C 1.39474 * 120.10763 * 0.02562 * 11 10 9 13 13 C 1.39197 * 119.97462 * 359.97438 * 12 11 10 14 14 C 1.39586 * 133.62086 * 179.97438 * 13 12 11 15 15 N 1.48027 * 126.35842 * 0.04180 * 14 13 12 16 16 O 1.31701 * 119.99751 * 359.97438 * 15 14 13 17 17 O 1.31693 * 120.00171 * 179.97438 * 15 14 13 18 18 N 1.32841 * 107.28564 * 179.80457 * 14 13 12 19 19 C 1.31345 * 110.01265 * 0.39591 * 18 14 13 20 20 N 1.34713 * 109.61576 * 359.59568 * 19 18 14 21 21 H 0.96998 * 119.99475 * 359.97438 * 1 2 3 22 22 H 1.08005 * 119.96352 * 0.02562 * 10 9 7 23 23 H 1.08000 * 119.94870 * 179.97438 * 11 10 9 24 24 H 1.07999 * 120.01141 * 179.97438 * 12 11 10 25 25 H 1.08001 * 125.18961 * 179.85487 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2984 0.0000 0.0000 3 14 2.2324 1.6177 0.0000 4 1 3.6924 1.3463 -0.0006 5 1 1.8737 2.3964 -1.2124 6 1 1.8737 2.3963 1.2126 7 6 2.0073 -1.2280 -0.0005 8 1 3.0489 -1.2504 0.2842 9 6 1.3670 -2.3936 -0.3644 10 6 0.2458 -2.3483 -1.2240 11 6 -0.3877 -3.5037 -1.5845 12 6 0.0694 -4.7311 -1.1052 13 6 1.1733 -4.7797 -0.2585 14 6 1.8568 -5.8195 0.3739 15 7 1.5375 -7.2621 0.2840 16 8 0.5205 -7.6670 -0.4484 17 8 2.2703 -8.1407 0.9362 18 7 2.8502 -5.2746 1.0673 19 6 2.8355 -3.9691 0.9236 20 7 1.8207 -3.6149 0.1115 21 1 -0.4849 0.8401 0.0004 22 1 -0.1100 -1.3992 -1.5969 23 1 -1.2444 -3.4666 -2.2410 24 1 -0.4328 -5.6435 -1.3908 25 1 3.5333 -3.2845 1.3828 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259918318.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:25 Heat of formation + Delta-G solvation = 86.899271 kcal Electronic energy + Delta-G solvation = -15536.337740 eV Core-core repulsion = 12712.871625 eV Total energy + Delta-G solvation = -2823.466114 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.03167 -37.53048 -36.81070 -34.72609 -33.04349 -32.64997 -30.29928 -28.75874 -26.48531 -24.86400 -22.95035 -21.58281 -20.70404 -18.58539 -17.39455 -16.87393 -16.10966 -15.82367 -15.48896 -15.22842 -14.66694 -14.21158 -13.76019 -13.60965 -12.69436 -12.36492 -12.03607 -11.33121 -11.18975 -11.07321 -10.69780 -10.25166 -10.12380 -10.06646 -9.85515 -9.70799 -9.59080 -8.73287 -8.03515 -7.36112 -5.41363 0.61208 1.66799 2.20881 2.21157 2.44809 2.49587 2.56863 3.09757 3.38473 3.44229 3.73607 4.46808 5.10415 5.21821 5.51989 5.61747 5.84580 5.93325 6.23454 6.36920 6.61585 6.79998 6.95870 7.16058 7.21733 7.32077 7.39766 7.51261 7.90688 7.99133 8.48979 8.89221 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.046612 B = 0.007440 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.557541 B = 3762.358619 C = 4282.609577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.073 3.927 3 Si 0.937 3.063 4 H -0.248 1.248 5 H -0.259 1.259 6 H -0.261 1.261 7 C -0.393 4.393 8 H 0.110 0.890 9 C 0.285 3.715 10 C -0.219 4.219 11 C -0.024 4.024 12 C -0.258 4.258 13 C 0.172 3.828 14 C -0.017 4.017 15 N 0.073 4.927 16 O -0.268 6.268 17 O -0.265 6.265 18 N -0.421 5.421 19 C 0.178 3.822 20 N -0.409 5.409 21 H 0.308 0.692 22 H 0.147 0.853 23 H 0.120 0.880 24 H 0.138 0.862 25 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.394 10.290 -2.067 10.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.159 4.159 3 Si 0.757 3.243 4 H -0.171 1.171 5 H -0.183 1.183 6 H -0.185 1.185 7 C -0.422 4.422 8 H 0.128 0.872 9 C 0.181 3.819 10 C -0.240 4.240 11 C -0.046 4.046 12 C -0.282 4.282 13 C 0.059 3.941 14 C -0.235 4.235 15 N 0.512 4.488 16 O -0.430 6.430 17 O -0.431 6.431 18 N -0.137 5.137 19 C -0.104 4.104 20 N -0.089 5.089 21 H 0.121 0.879 22 H 0.164 0.836 23 H 0.138 0.862 24 H 0.156 0.844 25 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 0.906 10.103 -1.460 10.248 hybrid contribution -0.329 0.649 -0.362 0.813 sum 0.577 10.752 -1.822 10.921 Atomic orbital electron populations 1.69317 1.08753 1.32828 1.22542 1.26456 0.95116 1.02808 0.91491 0.85720 0.81061 0.77478 0.79991 1.17063 1.18269 1.18520 1.19714 0.99231 0.89969 1.33320 0.87242 1.18150 0.91824 0.81267 0.90694 1.21021 0.99746 0.99175 1.04010 1.20860 0.96656 0.91789 0.95265 1.20324 1.00747 0.99177 1.07927 1.18535 0.94314 0.84413 0.96838 1.19178 1.06403 0.79785 1.18093 1.48582 1.00082 1.01410 0.98744 1.96150 1.19769 1.85402 1.41711 1.96169 1.50275 1.48359 1.48263 1.69114 1.18968 1.05983 1.19677 1.24436 0.95473 0.90443 1.00079 1.43399 1.24271 1.06641 1.34593 0.87906 0.83586 0.86221 0.84413 0.76804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -12.45 10.95 55.65 0.61 -11.84 15 2 C 0.07 1.21 5.13 -17.04 -0.09 1.13 15 3 Si 0.94 12.13 29.61 -169.99 -5.03 7.10 15 4 H -0.25 -3.23 7.11 56.52 0.40 -2.82 15 5 H -0.26 -3.33 7.11 56.52 0.40 -2.93 15 6 H -0.26 -3.41 7.11 56.52 0.40 -3.01 15 7 C -0.39 -7.14 8.76 -38.36 -0.34 -7.47 15 8 H 0.11 1.79 7.69 -52.48 -0.40 1.38 15 9 C 0.28 5.79 6.45 -83.70 -0.54 5.25 15 10 C -0.22 -4.28 8.61 -38.99 -0.34 -4.62 15 11 C -0.02 -0.45 10.02 -39.71 -0.40 -0.85 15 12 C -0.26 -5.59 9.81 -38.76 -0.38 -5.97 15 13 C 0.17 4.06 6.71 -84.08 -0.56 3.49 15 14 C -0.02 -0.45 8.26 -144.86 -1.20 -1.64 15 15 N 0.07 1.99 4.98 33.29 0.17 2.15 15 16 O -0.27 -7.08 18.49 -31.57 -0.58 -7.67 15 17 O -0.26 -7.33 19.97 -31.56 -0.63 -7.96 15 18 N -0.42 -10.05 11.18 -10.71 -0.12 -10.17 15 19 C 0.18 3.61 12.22 -89.97 -1.10 2.51 15 20 N -0.41 -8.83 2.99 -59.94 -0.18 -9.01 15 21 H 0.31 4.58 8.27 -40.82 -0.34 4.25 15 22 H 0.15 2.72 6.18 -52.48 -0.32 2.39 15 23 H 0.12 1.86 8.06 -52.49 -0.42 1.44 15 24 H 0.14 2.95 6.99 -52.49 -0.37 2.58 15 25 H 0.22 3.29 7.93 -52.49 -0.42 2.88 15 LS Contribution 240.59 15.07 3.63 3.63 Total: -1.00 -27.63 240.59 -8.15 -35.78 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -1.07 Total: 6.16 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -4.94 Total: -8.16 kcal Atomic # 7 Polarization: -29.35 SS G_CDS: 0.48 Total: -28.87 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -1.21 Total: -15.63 kcal Atomic # 14 Polarization: 12.13 SS G_CDS: -5.03 Total: 7.10 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -27.63 -8.15 -35.78 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918318.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.680 kcal (2) G-P(sol) polarization free energy of solvation -27.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds