Wall clock time and date at job start Mon Mar 30 2020 03:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29839 * 1 3 3 Si 1.86798 * 120.00199 * 2 1 4 4 H 1.48497 * 109.47079 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47115 * 300.00388 * 3 2 1 6 6 H 1.48505 * 109.46753 * 60.00477 * 3 2 1 7 7 C 1.41795 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99841 * 197.72667 * 7 2 1 9 9 C 1.37874 * 120.00435 * 17.71812 * 7 2 1 10 10 C 1.41346 * 120.11738 * 25.69391 * 9 7 2 11 11 C 1.36612 * 120.08094 * 179.97438 * 10 9 7 12 12 C 1.39474 * 120.10763 * 0.02562 * 11 10 9 13 13 C 1.39197 * 119.97462 * 359.97438 * 12 11 10 14 14 C 1.39586 * 133.62086 * 179.97438 * 13 12 11 15 15 N 1.48027 * 126.35842 * 0.04180 * 14 13 12 16 16 O 1.31701 * 119.99751 * 359.97438 * 15 14 13 17 17 O 1.31693 * 120.00171 * 179.97438 * 15 14 13 18 18 N 1.32841 * 107.28564 * 179.80457 * 14 13 12 19 19 C 1.31345 * 110.01265 * 0.39591 * 18 14 13 20 20 N 1.34713 * 109.61576 * 359.59568 * 19 18 14 21 21 H 0.96998 * 119.99475 * 359.97438 * 1 2 3 22 22 H 1.08005 * 119.96352 * 0.02562 * 10 9 7 23 23 H 1.08000 * 119.94870 * 179.97438 * 11 10 9 24 24 H 1.07999 * 120.01141 * 179.97438 * 12 11 10 25 25 H 1.08001 * 125.18961 * 179.85487 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2984 0.0000 0.0000 3 14 2.2324 1.6177 0.0000 4 1 3.6924 1.3463 -0.0006 5 1 1.8737 2.3964 -1.2124 6 1 1.8737 2.3963 1.2126 7 6 2.0073 -1.2280 -0.0005 8 1 3.0489 -1.2504 0.2842 9 6 1.3670 -2.3936 -0.3644 10 6 0.2458 -2.3483 -1.2240 11 6 -0.3877 -3.5037 -1.5845 12 6 0.0694 -4.7311 -1.1052 13 6 1.1733 -4.7797 -0.2585 14 6 1.8568 -5.8195 0.3739 15 7 1.5375 -7.2621 0.2840 16 8 0.5205 -7.6670 -0.4484 17 8 2.2703 -8.1407 0.9362 18 7 2.8502 -5.2746 1.0673 19 6 2.8355 -3.9691 0.9236 20 7 1.8207 -3.6149 0.1115 21 1 -0.4849 0.8401 0.0004 22 1 -0.1100 -1.3992 -1.5969 23 1 -1.2444 -3.4666 -2.2410 24 1 -0.4328 -5.6435 -1.3908 25 1 3.5333 -3.2845 1.3828 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259918318.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:24 Heat of formation + Delta-G solvation = 72.405238 kcal Electronic energy + Delta-G solvation = -15536.966248 eV Core-core repulsion = 12712.871625 eV Total energy + Delta-G solvation = -2824.094623 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.67042 -39.20931 -38.44796 -36.25493 -34.79510 -34.27452 -31.92276 -30.43123 -28.12543 -26.56613 -24.54564 -23.18525 -22.35704 -20.14698 -19.03830 -18.58125 -17.62930 -17.43659 -17.18734 -16.71114 -16.23286 -15.93010 -15.18184 -15.08097 -14.01844 -13.86976 -13.32832 -12.84670 -12.66888 -12.38795 -11.95233 -11.89124 -11.84992 -11.69659 -11.53288 -11.42556 -11.34274 -10.39987 -9.43320 -9.00649 -7.04414 -1.26037 0.11642 0.55765 0.60639 1.36422 1.43503 1.64172 1.78612 1.90929 2.08521 2.22320 2.89178 3.52207 3.57543 3.90770 4.05962 4.34124 4.46924 4.60986 4.74070 5.06370 5.20906 5.35496 5.57531 5.60375 5.65832 5.85322 5.91450 6.20743 6.42971 6.79113 7.53708 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.046612 B = 0.007440 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.557541 B = 3762.358619 C = 4282.609577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.719 5.719 2 C 0.041 3.959 3 Si 1.009 2.991 4 H -0.242 1.242 5 H -0.255 1.255 6 H -0.260 1.260 7 C -0.343 4.343 8 H 0.141 0.859 9 C 0.246 3.754 10 C -0.192 4.192 11 C -0.033 4.033 12 C -0.248 4.248 13 C 0.140 3.860 14 C -0.027 4.027 15 N 0.075 4.925 16 O -0.338 6.338 17 O -0.372 6.372 18 N -0.477 5.477 19 C 0.240 3.760 20 N -0.430 5.430 21 H 0.327 0.673 22 H 0.163 0.837 23 H 0.157 0.843 24 H 0.127 0.873 25 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.810 17.633 -2.531 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.191 4.191 3 Si 0.826 3.174 4 H -0.165 1.165 5 H -0.179 1.179 6 H -0.185 1.185 7 C -0.371 4.371 8 H 0.158 0.842 9 C 0.143 3.857 10 C -0.212 4.212 11 C -0.054 4.054 12 C -0.274 4.274 13 C 0.030 3.970 14 C -0.248 4.248 15 N 0.477 4.523 16 O -0.481 6.481 17 O -0.510 6.510 18 N -0.194 5.194 19 C -0.045 4.045 20 N -0.114 5.114 21 H 0.142 0.858 22 H 0.180 0.820 23 H 0.174 0.826 24 H 0.145 0.855 25 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 1.266 17.072 -1.917 17.226 hybrid contribution -0.549 -0.283 -0.332 0.702 sum 0.717 16.789 -2.249 16.954 Atomic orbital electron populations 1.69273 1.10081 1.35358 1.19127 1.27382 0.95722 1.05023 0.90955 0.84654 0.79847 0.72984 0.79911 1.16472 1.17946 1.18459 1.20571 1.00353 0.89557 1.26666 0.84185 1.18632 0.92872 0.81537 0.92688 1.21440 0.98179 0.99713 1.01906 1.21164 0.97886 0.90373 0.95980 1.20565 0.99860 1.00201 1.06795 1.18646 0.95392 0.84884 0.98104 1.19583 1.07253 0.79358 1.18614 1.48567 1.01032 1.01993 1.00681 1.96043 1.21659 1.85976 1.44399 1.96082 1.52791 1.49502 1.52588 1.69164 1.20263 1.07645 1.22352 1.25684 0.93165 0.90070 0.95599 1.43437 1.25326 1.06136 1.36469 0.85835 0.81957 0.82557 0.85473 0.71404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -20.20 10.95 22.15 0.24 -19.96 15 2 C 0.04 1.06 5.13 85.87 0.44 1.50 15 3 Si 1.01 18.12 29.61 68.60 2.03 20.15 15 4 H -0.24 -4.24 7.11 99.48 0.71 -3.53 15 5 H -0.26 -4.59 7.11 99.48 0.71 -3.88 15 6 H -0.26 -4.80 7.11 99.48 0.71 -4.09 15 7 C -0.34 -9.95 8.76 23.06 0.20 -9.75 15 8 H 0.14 3.32 7.69 -2.91 -0.02 3.30 15 9 C 0.25 8.73 6.45 38.73 0.25 8.98 15 10 C -0.19 -6.57 8.61 22.65 0.20 -6.38 15 11 C -0.03 -1.15 10.02 22.19 0.22 -0.93 15 12 C -0.25 -10.76 9.81 22.80 0.22 -10.54 15 13 C 0.14 6.67 6.71 38.68 0.26 6.93 15 14 C -0.03 -1.44 8.26 129.68 1.07 -0.37 15 15 N 0.07 4.53 4.98 -48.59 -0.24 4.28 15 16 O -0.34 -20.29 18.49 3.51 0.06 -20.22 15 17 O -0.37 -23.67 19.97 3.53 0.07 -23.60 15 18 N -0.48 -23.22 11.18 -187.79 -2.10 -25.32 15 19 C 0.24 9.04 12.22 180.12 2.20 11.24 15 20 N -0.43 -17.33 2.99 -343.54 -1.03 -18.36 15 21 H 0.33 7.53 8.27 -92.71 -0.77 6.77 15 22 H 0.16 5.03 6.18 -2.91 -0.02 5.01 15 23 H 0.16 4.26 8.06 -2.91 -0.02 4.24 15 24 H 0.13 5.74 6.99 -2.91 -0.02 5.72 15 25 H 0.27 6.55 7.93 -2.91 -0.02 6.53 15 Total: -1.00 -67.63 240.59 5.35 -62.28 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 1.25 Total: 20.06 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 5.07 Total: 0.69 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -3.13 Total: -59.35 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: 0.14 Total: -43.82 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: 2.03 Total: 20.15 kcal Total: -67.63 5.35 -62.28 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918318.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.682 kcal (2) G-P(sol) polarization free energy of solvation -67.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds