Wall clock time and date at job start Mon Mar 30 2020 03:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48533 * 111.00201 * 2 1 4 4 C 1.54934 * 103.23145 * 200.28345 * 3 2 1 5 5 C 1.54600 * 102.92153 * 37.41135 * 4 3 2 6 6 H 1.09002 * 110.30929 * 219.12856 * 5 4 3 7 7 C 1.50702 * 110.30691 * 97.05811 * 5 4 3 8 8 H 1.07998 * 120.00224 * 242.79120 * 7 5 4 9 9 C 1.37874 * 119.99721 * 62.79333 * 7 5 4 10 10 N 1.31517 * 120.00312 * 179.97438 * 9 7 5 11 11 Si 1.86800 * 120.00125 * 359.97438 * 9 7 5 12 12 H 1.48504 * 109.47197 * 90.00224 * 11 9 7 13 13 H 1.48507 * 109.47061 * 209.99767 * 11 9 7 14 14 H 1.48495 * 109.47042 * 330.00091 * 11 9 7 15 15 C 1.47906 * 110.99907 * 242.60405 * 2 1 3 16 16 H 1.09003 * 109.91386 * 26.49536 * 15 2 1 17 17 C 1.50703 * 109.91967 * 265.19664 * 15 2 1 18 18 C 1.38226 * 119.61586 * 7.13799 * 17 15 2 19 19 C 1.38628 * 119.15568 * 179.71340 * 18 17 15 20 20 C 1.38661 * 118.42391 * 0.54548 * 19 18 17 21 21 C 1.38188 * 119.16298 * 359.73732 * 20 19 18 22 22 N 1.31851 * 119.61648 * 187.40849 * 17 15 2 23 23 H 1.08992 * 109.47522 * 60.12403 * 1 2 3 24 24 H 1.09004 * 109.46898 * 180.12638 * 1 2 3 25 25 H 1.09004 * 109.46630 * 300.11823 * 1 2 3 26 26 H 1.08993 * 110.66593 * 81.84585 * 3 2 1 27 27 H 1.08999 * 110.80814 * 318.78470 * 3 2 1 28 28 H 1.09000 * 110.72365 * 279.05549 * 4 3 2 29 29 H 1.08993 * 110.88202 * 155.84387 * 4 3 2 30 30 H 0.96992 * 120.00542 * 179.97438 * 10 9 7 31 31 H 1.08002 * 120.41743 * 359.97438 * 18 17 15 32 32 H 1.08003 * 120.78372 * 180.30445 * 19 18 17 33 33 H 1.07997 * 120.42184 * 179.70781 * 20 19 18 34 34 H 1.07997 * 119.61486 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2107 -0.5228 5 6 3.2982 0.1054 -1.5932 6 1 4.1470 -0.5774 -1.5542 7 6 3.1835 0.7181 -2.9652 8 1 2.2830 0.5794 -3.5450 9 6 4.2283 1.4557 -3.4803 10 7 4.1285 1.9901 -4.6778 11 14 5.7856 1.6962 -2.4772 12 1 6.7406 0.5986 -2.7748 13 1 6.4046 2.9996 -2.8287 14 1 5.4499 1.6817 -1.0307 15 6 1.9990 -0.6354 -1.2260 16 1 1.2758 -0.5402 -2.0359 17 6 2.2938 -2.0899 -0.9641 18 6 1.9185 -2.6571 0.2392 19 6 2.1890 -3.9974 0.4676 20 6 2.8399 -4.7174 -0.5226 21 6 3.1899 -4.0810 -1.6982 22 7 2.9114 -2.8053 -1.8835 23 1 -0.3634 0.5119 -0.8910 24 1 -0.3633 -1.0277 0.0023 25 1 -0.3633 0.5157 0.8890 26 1 2.0042 1.7976 1.0095 27 1 1.4246 2.0228 -0.6713 28 1 4.1116 0.8836 0.2786 29 1 3.8152 2.1343 -0.9711 30 1 4.8633 2.5093 -5.0401 31 1 1.4171 -2.0646 0.9902 32 1 1.9030 -4.4685 1.3965 33 1 3.0708 -5.7623 -0.3768 34 1 3.6975 -4.6348 -2.4741 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259927126.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:57 Heat of formation + Delta-G solvation = 56.698048 kcal Electronic energy + Delta-G solvation = -16492.775606 eV Core-core repulsion = 14005.091968 eV Total energy + Delta-G solvation = -2487.683638 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.98625 -38.02203 -33.17831 -32.15447 -31.33434 -31.00949 -27.84124 -26.02997 -23.61981 -23.09283 -22.26317 -20.46751 -19.28942 -16.89420 -16.29132 -15.70778 -15.25122 -15.10140 -14.41431 -13.79395 -13.69817 -13.40172 -12.90416 -12.78165 -12.56261 -12.28353 -11.74938 -11.40171 -11.17232 -10.85894 -10.73089 -10.56132 -10.14962 -9.91497 -9.45240 -9.21792 -8.98626 -8.84367 -8.49187 -8.39492 -7.95101 -6.01408 -3.99261 1.55287 1.70721 3.33985 3.42597 3.46210 4.23090 4.33261 4.48903 5.03400 5.10968 5.17997 5.32107 5.46458 5.52045 5.58013 5.67391 5.79035 5.95121 6.06124 6.11884 6.13022 6.18716 6.28130 6.40847 6.46297 6.55254 6.78920 6.84389 7.05493 7.16805 7.33687 7.44538 7.56635 7.84795 8.54256 8.58914 9.00695 9.60870 11.11698 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.024409 B = 0.010123 C = 0.008310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.865503 B = 2765.253777 C = 3368.589731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.524 5.524 3 C 0.046 3.954 4 C -0.127 4.127 5 C 0.029 3.971 6 H 0.036 0.964 7 C -0.501 4.501 8 H 0.071 0.929 9 C 0.072 3.928 10 N -0.902 5.902 11 Si 0.854 3.146 12 H -0.281 1.281 13 H -0.291 1.291 14 H -0.237 1.237 15 C 0.123 3.877 16 H 0.075 0.925 17 C 0.159 3.841 18 C -0.158 4.158 19 C -0.088 4.088 20 C -0.194 4.194 21 C 0.095 3.905 22 N -0.467 5.467 23 H 0.030 0.970 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.262 0.738 31 H 0.143 0.857 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.515 -8.177 11.293 14.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.248 5.248 3 C -0.082 4.082 4 C -0.166 4.166 5 C 0.010 3.990 6 H 0.054 0.946 7 C -0.539 4.539 8 H 0.089 0.911 9 C -0.129 4.129 10 N -0.541 5.541 11 Si 0.681 3.319 12 H -0.208 1.208 13 H -0.217 1.217 14 H -0.161 1.161 15 C 0.014 3.986 16 H 0.093 0.907 17 C 0.021 3.979 18 C -0.178 4.178 19 C -0.114 4.114 20 C -0.214 4.214 21 C -0.063 4.063 22 N -0.176 5.176 23 H 0.049 0.951 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.161 0.839 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.041 -7.941 10.843 14.034 hybrid contribution 0.377 0.058 0.406 0.557 sum -3.664 -7.883 11.250 14.217 Atomic orbital electron populations 1.22513 0.88981 1.01368 1.00590 1.64453 1.07091 1.15942 1.37355 1.23109 0.96855 0.88701 0.99507 1.23192 0.93959 1.01157 0.98253 1.19805 0.91793 0.92451 0.94988 0.94603 1.20952 1.03162 1.31240 0.98533 0.91076 1.24940 0.98119 0.95140 0.94741 1.69904 1.32497 1.35106 1.16543 0.87485 0.83831 0.77435 0.83105 1.20761 1.21713 1.16073 1.21268 0.99358 0.87872 0.90075 0.90694 1.21322 0.91408 0.95953 0.89254 1.22083 1.01759 0.94849 0.99115 1.21530 0.96784 0.94416 0.98665 1.22019 1.02472 1.00985 0.95912 1.22733 0.96694 0.90802 0.96022 1.67507 1.10909 1.06585 1.32557 0.95130 0.92035 0.91801 0.91451 0.93229 0.93492 0.90809 0.92806 0.83895 0.85694 0.85702 0.83331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 8.94 60.06 0.54 0.75 16 2 N -0.52 -9.32 3.79 -232.16 -0.88 -10.20 16 3 C 0.05 0.84 6.56 -1.90 -0.01 0.82 16 4 C -0.13 -2.73 4.46 -24.87 -0.11 -2.84 16 5 C 0.03 0.71 1.95 -90.41 -0.18 0.53 16 6 H 0.04 0.92 6.87 -51.93 -0.36 0.56 16 7 C -0.50 -14.12 9.10 -34.44 -0.31 -14.43 16 8 H 0.07 2.19 7.60 -52.49 -0.40 1.80 16 9 C 0.07 2.08 5.36 -17.82 -0.10 1.98 16 10 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 11 Si 0.85 21.22 25.93 -169.99 -4.41 16.81 16 12 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 14 H -0.24 -5.38 4.44 56.52 0.25 -5.13 16 15 C 0.12 2.57 2.61 -67.79 -0.18 2.40 16 16 H 0.08 1.70 6.94 -51.93 -0.36 1.34 16 17 C 0.16 3.11 6.01 -82.59 -0.50 2.61 16 18 C -0.16 -2.56 9.04 -39.44 -0.36 -2.92 16 19 C -0.09 -1.20 10.17 -39.28 -0.40 -1.60 16 20 C -0.19 -2.62 10.11 -39.44 -0.40 -3.02 16 21 C 0.10 1.55 11.18 -17.55 -0.20 1.35 16 22 N -0.47 -9.53 9.82 -9.47 -0.09 -9.63 16 23 H 0.03 0.47 7.99 -51.93 -0.42 0.05 16 24 H 0.06 0.84 7.63 -51.93 -0.40 0.44 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.05 0.94 8.01 -51.93 -0.42 0.52 16 28 H 0.05 0.96 7.89 -51.93 -0.41 0.55 16 29 H 0.07 1.67 5.13 -51.93 -0.27 1.40 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.14 2.16 6.41 -52.49 -0.34 1.82 16 32 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 33 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 270.88 15.07 4.08 4.08 Total: -1.00 -31.48 270.88 -7.48 -38.95 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -4.76 Total: 1.43 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -2.20 Total: -14.38 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -0.20 Total: -46.90 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.41 Total: 16.81 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.48 -7.48 -38.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259927126.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.652 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds