Wall clock time and date at job start Mon Mar 30 2020 03:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48533 * 111.00201 * 2 1 4 4 C 1.54934 * 103.23145 * 200.28345 * 3 2 1 5 5 C 1.54600 * 102.92153 * 37.41135 * 4 3 2 6 6 H 1.09002 * 110.30929 * 219.12856 * 5 4 3 7 7 C 1.50702 * 110.30691 * 97.05811 * 5 4 3 8 8 H 1.07998 * 120.00224 * 242.79120 * 7 5 4 9 9 C 1.37874 * 119.99721 * 62.79333 * 7 5 4 10 10 N 1.31517 * 120.00312 * 179.97438 * 9 7 5 11 11 Si 1.86800 * 120.00125 * 359.97438 * 9 7 5 12 12 H 1.48504 * 109.47197 * 90.00224 * 11 9 7 13 13 H 1.48507 * 109.47061 * 209.99767 * 11 9 7 14 14 H 1.48495 * 109.47042 * 330.00091 * 11 9 7 15 15 C 1.47906 * 110.99907 * 242.60405 * 2 1 3 16 16 H 1.09003 * 109.91386 * 26.49536 * 15 2 1 17 17 C 1.50703 * 109.91967 * 265.19664 * 15 2 1 18 18 C 1.38226 * 119.61586 * 7.13799 * 17 15 2 19 19 C 1.38628 * 119.15568 * 179.71340 * 18 17 15 20 20 C 1.38661 * 118.42391 * 0.54548 * 19 18 17 21 21 C 1.38188 * 119.16298 * 359.73732 * 20 19 18 22 22 N 1.31851 * 119.61648 * 187.40849 * 17 15 2 23 23 H 1.08992 * 109.47522 * 60.12403 * 1 2 3 24 24 H 1.09004 * 109.46898 * 180.12638 * 1 2 3 25 25 H 1.09004 * 109.46630 * 300.11823 * 1 2 3 26 26 H 1.08993 * 110.66593 * 81.84585 * 3 2 1 27 27 H 1.08999 * 110.80814 * 318.78470 * 3 2 1 28 28 H 1.09000 * 110.72365 * 279.05549 * 4 3 2 29 29 H 1.08993 * 110.88202 * 155.84387 * 4 3 2 30 30 H 0.96992 * 120.00542 * 179.97438 * 10 9 7 31 31 H 1.08002 * 120.41743 * 359.97438 * 18 17 15 32 32 H 1.08003 * 120.78372 * 180.30445 * 19 18 17 33 33 H 1.07997 * 120.42184 * 179.70781 * 20 19 18 34 34 H 1.07997 * 119.61486 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2107 -0.5228 5 6 3.2982 0.1054 -1.5932 6 1 4.1470 -0.5774 -1.5542 7 6 3.1835 0.7181 -2.9652 8 1 2.2830 0.5794 -3.5450 9 6 4.2283 1.4557 -3.4803 10 7 4.1285 1.9901 -4.6778 11 14 5.7856 1.6962 -2.4772 12 1 6.7406 0.5986 -2.7748 13 1 6.4046 2.9996 -2.8287 14 1 5.4499 1.6817 -1.0307 15 6 1.9990 -0.6354 -1.2260 16 1 1.2758 -0.5402 -2.0359 17 6 2.2938 -2.0899 -0.9641 18 6 1.9185 -2.6571 0.2392 19 6 2.1890 -3.9974 0.4676 20 6 2.8399 -4.7174 -0.5226 21 6 3.1899 -4.0810 -1.6982 22 7 2.9114 -2.8053 -1.8835 23 1 -0.3634 0.5119 -0.8910 24 1 -0.3633 -1.0277 0.0023 25 1 -0.3633 0.5157 0.8890 26 1 2.0042 1.7976 1.0095 27 1 1.4246 2.0228 -0.6713 28 1 4.1116 0.8836 0.2786 29 1 3.8152 2.1343 -0.9711 30 1 4.8633 2.5093 -5.0401 31 1 1.4171 -2.0646 0.9902 32 1 1.9030 -4.4685 1.3965 33 1 3.0708 -5.7623 -0.3768 34 1 3.6975 -4.6348 -2.4741 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259927126.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:56 Heat of formation + Delta-G solvation = 34.673894 kcal Electronic energy + Delta-G solvation = -16493.730645 eV Core-core repulsion = 14005.091968 eV Total energy + Delta-G solvation = -2488.638677 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.32802 -39.49746 -35.14081 -33.48429 -32.86222 -32.58461 -29.42882 -27.64673 -25.31554 -24.32052 -23.69266 -22.05198 -20.95993 -18.75057 -17.80108 -17.10792 -16.94557 -16.42322 -15.71745 -15.61995 -15.16973 -14.86094 -14.49622 -14.32273 -14.01016 -13.73749 -13.18819 -12.96069 -12.76195 -12.61131 -12.33192 -12.12985 -11.90131 -11.79297 -11.08922 -10.99847 -10.71293 -10.63274 -10.16206 -9.70772 -9.41776 -8.28481 -6.31169 0.32972 0.54437 1.33866 1.37547 1.47481 2.36885 2.89233 3.01208 3.06383 3.76744 3.93722 4.02237 4.13523 4.19908 4.31929 4.40600 4.44561 4.52094 4.63631 4.70505 4.80785 4.88225 4.98673 5.02840 5.06011 5.21200 5.27378 5.37159 5.39351 5.54346 5.63208 5.89615 5.99545 6.13142 6.30471 6.72169 7.31052 7.32734 8.88331 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.024409 B = 0.010123 C = 0.008310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.865503 B = 2765.253777 C = 3368.589731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.511 5.511 3 C 0.049 3.951 4 C -0.128 4.128 5 C 0.028 3.972 6 H 0.018 0.982 7 C -0.501 4.501 8 H 0.021 0.979 9 C 0.012 3.988 10 N -0.953 5.953 11 Si 0.918 3.082 12 H -0.288 1.288 13 H -0.287 1.287 14 H -0.198 1.198 15 C 0.130 3.870 16 H 0.035 0.965 17 C 0.124 3.876 18 C -0.155 4.155 19 C -0.079 4.079 20 C -0.174 4.174 21 C 0.074 3.926 22 N -0.523 5.523 23 H 0.014 0.986 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.107 0.893 27 H 0.034 0.966 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.264 0.736 31 H 0.156 0.844 32 H 0.170 0.830 33 H 0.168 0.832 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.337 -9.829 15.295 18.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.234 5.234 3 C -0.078 4.078 4 C -0.167 4.167 5 C 0.008 3.992 6 H 0.036 0.964 7 C -0.539 4.539 8 H 0.039 0.961 9 C -0.185 4.185 10 N -0.594 5.594 11 Si 0.742 3.258 12 H -0.215 1.215 13 H -0.214 1.214 14 H -0.120 1.120 15 C 0.021 3.979 16 H 0.053 0.947 17 C -0.013 4.013 18 C -0.175 4.175 19 C -0.105 4.105 20 C -0.194 4.194 21 C -0.083 4.083 22 N -0.233 5.233 23 H 0.033 0.967 24 H 0.092 0.908 25 H 0.115 0.885 26 H 0.125 0.875 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.173 0.827 32 H 0.187 0.813 33 H 0.186 0.814 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.891 -9.598 14.869 18.121 hybrid contribution 0.225 0.432 -0.919 1.040 sum -3.666 -9.166 13.950 17.090 Atomic orbital electron populations 1.22623 0.86909 1.02542 1.01358 1.64553 1.08919 1.15125 1.34845 1.23140 0.94462 0.89036 1.01159 1.23088 0.96669 0.99208 0.97685 1.19665 0.93069 0.93129 0.93315 0.96400 1.21164 1.01259 1.30998 1.00492 0.96085 1.25859 1.01902 0.94855 0.95855 1.70067 1.33871 1.36656 1.18757 0.86480 0.78658 0.76927 0.83720 1.21455 1.21356 1.12016 1.20948 0.96869 0.89767 0.90366 0.94676 1.21107 0.94018 0.95100 0.91064 1.22192 1.01296 0.96310 0.97694 1.22039 0.95155 0.93191 1.00128 1.22455 1.00004 1.02739 0.94162 1.23161 0.97268 0.89794 0.98072 1.67354 1.12699 1.08915 1.34325 0.96727 0.90793 0.88501 0.87476 0.94712 0.91536 0.92177 0.92751 0.82657 0.81265 0.81431 0.81774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.39 8.94 127.69 1.14 1.53 16 2 N -0.51 -17.40 3.79 -888.43 -3.37 -20.77 16 3 C 0.05 1.72 6.56 86.65 0.57 2.29 16 4 C -0.13 -5.35 4.46 31.80 0.14 -5.20 16 5 C 0.03 1.38 1.95 -10.66 -0.02 1.36 16 6 H 0.02 0.94 6.87 -2.39 -0.02 0.92 16 7 C -0.50 -30.02 9.10 25.60 0.23 -29.78 16 8 H 0.02 1.42 7.60 -2.91 -0.02 1.39 16 9 C 0.01 0.70 5.36 84.65 0.45 1.15 16 10 N -0.95 -61.93 13.96 21.45 0.30 -61.63 16 11 Si 0.92 44.74 25.93 68.60 1.78 46.52 16 12 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 13 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 14 H -0.20 -8.39 4.44 99.48 0.44 -7.95 16 15 C 0.13 5.58 2.61 44.31 0.12 5.69 16 16 H 0.04 1.74 6.94 -2.39 -0.02 1.72 16 17 C 0.12 4.86 6.01 42.55 0.26 5.12 16 18 C -0.16 -4.61 9.04 22.36 0.20 -4.41 16 19 C -0.08 -1.81 10.17 22.46 0.23 -1.58 16 20 C -0.17 -4.02 10.11 22.36 0.23 -3.79 16 21 C 0.07 2.32 11.18 84.67 0.95 3.27 16 22 N -0.52 -21.76 9.82 -183.88 -1.80 -23.57 16 23 H 0.01 0.44 7.99 -2.39 -0.02 0.42 16 24 H 0.07 1.86 7.63 -2.39 -0.02 1.85 16 25 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 27 H 0.03 1.31 8.01 -2.39 -0.02 1.29 16 28 H 0.07 2.52 7.89 -2.39 -0.02 2.50 16 29 H 0.06 2.65 5.13 -2.39 -0.01 2.63 16 30 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 31 H 0.16 4.12 6.41 -2.91 -0.02 4.10 16 32 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 34 H 0.17 4.29 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -74.44 270.88 2.21 -72.23 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.81 Total: 11.58 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: 4.49 Total: -24.36 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -4.88 Total: -105.96 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.78 Total: 46.52 kcal Total: -74.44 2.21 -72.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259927126.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.903 kcal (2) G-P(sol) polarization free energy of solvation -74.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds