Wall clock time and date at job start Mon Mar 30 2020 03:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 O 1.42095 * 110.54709 * 2 1 4 4 O 1.42101 * 110.54331 * 223.24725 * 2 1 3 5 5 C 1.76204 * 104.45125 * 111.62713 * 2 1 3 6 6 N 1.28788 * 124.99577 * 89.99284 * 5 2 1 7 7 C 1.33654 * 116.06253 * 179.97438 * 6 5 2 8 8 C 1.41154 * 122.86361 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00312 * 180.02562 * 8 7 6 10 10 C 1.39724 * 120.00092 * 0.03107 * 8 7 6 11 11 N 1.31027 * 120.00010 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00297 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46832 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47463 * 119.99458 * 12 10 8 15 15 H 1.48497 * 109.47192 * 239.99824 * 12 10 8 16 16 C 1.37693 * 114.27257 * 0.02562 * 7 6 5 17 17 S 1.70994 * 108.84155 * 359.97438 * 16 7 6 18 18 H 1.09012 * 109.46921 * 308.37448 * 1 2 3 19 19 H 1.08995 * 109.47257 * 68.37510 * 1 2 3 20 20 H 1.09000 * 109.47576 * 188.38225 * 1 2 3 21 21 H 0.96998 * 119.99864 * 180.02562 * 11 10 8 22 22 H 1.08006 * 125.58080 * 179.97438 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 6 2.2536 -0.6289 1.5862 6 7 2.4378 -1.8733 1.8623 7 6 2.7679 -2.1515 3.1272 8 6 3.0021 -3.4656 3.5863 9 1 3.2660 -3.6377 4.6193 10 6 2.8926 -4.5437 2.7044 11 7 2.5721 -4.3350 1.4512 12 14 3.2033 -6.2826 3.3118 13 1 3.5473 -6.2484 4.7560 14 1 1.9810 -7.1022 3.1130 15 1 4.3290 -6.8796 2.5493 16 6 2.8589 -1.0471 3.9444 17 16 2.5059 0.3508 3.0251 18 1 -0.3633 0.6380 0.8058 19 1 -0.3633 0.3787 -0.9553 20 1 -0.3634 -1.0167 0.1498 21 1 2.4957 -5.0836 0.8390 22 1 3.1118 -1.0614 4.9944 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259957835.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:34 Heat of formation + Delta-G solvation = -56.957348 kcal Electronic energy + Delta-G solvation = -12315.772998 eV Core-core repulsion = 9896.139770 eV Total energy + Delta-G solvation = -2419.633229 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 232.997 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.83357 -38.04516 -36.97673 -35.21334 -31.56535 -30.30887 -27.80937 -25.72037 -21.83571 -19.93622 -19.67147 -18.20439 -17.22882 -17.16391 -16.66066 -16.46684 -15.10170 -14.93316 -14.20191 -13.96433 -13.90487 -13.50306 -13.18169 -13.07176 -12.96259 -12.87641 -12.51576 -12.27736 -11.91751 -11.68559 -11.31454 -10.28859 -10.20135 -9.61467 -8.53308 -6.50357 -0.87078 -0.17568 0.69542 1.34470 1.36050 1.47061 1.55257 1.80296 2.13273 2.20660 2.94911 3.34146 3.35611 4.11499 4.18458 4.45415 4.88745 4.92685 5.15321 5.24316 6.04821 6.37390 6.76163 7.29122 8.37688 Molecular weight = 233.00amu Principal moments of inertia in cm(-1) A = 0.036437 B = 0.009954 C = 0.008314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.258941 B = 2812.279980 C = 3367.202086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.609 4.609 2 S 2.524 3.476 3 O -0.955 6.955 4 O -0.962 6.962 5 C -0.523 4.523 6 N -0.334 5.334 7 C 0.167 3.833 8 C -0.467 4.467 9 H 0.092 0.908 10 C 0.023 3.977 11 N -0.786 5.786 12 Si 0.994 3.006 13 H -0.254 1.254 14 H -0.262 1.262 15 H -0.269 1.269 16 C -0.432 4.432 17 S 0.134 5.866 18 H 0.160 0.840 19 H 0.175 0.825 20 H 0.141 0.859 21 H 0.285 0.715 22 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.383 4.834 -1.306 8.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.765 4.765 2 S 2.699 3.301 3 O -0.952 6.952 4 O -0.960 6.960 5 C -0.880 4.880 6 N -0.052 5.052 7 C 0.040 3.960 8 C -0.501 4.501 9 H 0.110 0.890 10 C -0.196 4.196 11 N -0.409 5.409 12 Si 0.814 3.186 13 H -0.178 1.178 14 H -0.186 1.186 15 H -0.194 1.194 16 C -0.574 4.574 17 S 0.381 5.619 18 H 0.178 0.822 19 H 0.193 0.807 20 H 0.159 0.841 21 H 0.095 0.905 22 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.900 5.638 -2.330 8.487 hybrid contribution 0.252 -1.931 1.437 2.420 sum -5.649 3.707 -0.893 6.815 Atomic orbital electron populations 1.29923 1.17638 1.13957 1.15018 1.04983 0.81012 0.72828 0.71241 1.93536 1.80288 1.36166 1.85215 1.93535 1.79977 1.62068 1.60379 1.40705 1.21552 1.00711 1.24997 1.67520 1.05695 1.13794 1.18216 1.18866 0.95625 0.95787 0.85683 1.19387 1.43447 0.89280 0.97992 0.88997 1.26983 0.92438 1.05836 0.94386 1.70177 1.31237 1.34829 1.04651 0.84975 0.78894 0.75162 0.79557 1.17769 1.18617 1.19396 1.26047 1.30679 0.95400 1.05273 1.82208 1.68041 1.10643 1.01022 0.82160 0.80742 0.84050 0.90457 0.82351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.61 -12.51 10.79 113.37 1.22 -11.28 14 2 S 2.52 88.83 5.97 -56.49 -0.34 88.49 14 3 O -0.96 -35.28 17.76 -127.65 -2.27 -37.55 14 4 O -0.96 -42.65 17.91 -127.65 -2.29 -44.94 14 5 C -0.52 -23.74 7.23 130.69 0.94 -22.80 14 6 N -0.33 -18.20 8.41 -189.82 -1.60 -19.79 14 7 C 0.17 9.27 6.47 39.45 0.26 9.52 14 8 C -0.47 -25.65 9.23 23.35 0.22 -25.44 14 9 H 0.09 4.74 7.84 -2.91 -0.02 4.72 14 10 C 0.02 1.19 5.49 85.17 0.47 1.66 14 11 N -0.79 -43.23 11.69 21.80 0.25 -42.98 14 12 Si 0.99 38.70 29.56 68.60 2.03 40.73 14 13 H -0.25 -9.48 7.11 99.48 0.71 -8.77 14 14 H -0.26 -9.63 7.11 99.48 0.71 -8.93 14 15 H -0.27 -10.23 7.11 99.48 0.71 -9.53 14 16 C -0.43 -21.18 10.98 67.69 0.74 -20.44 14 17 S 0.13 5.58 22.96 -56.49 -1.30 4.29 14 18 H 0.16 2.49 8.14 -2.38 -0.02 2.47 14 19 H 0.17 2.16 8.14 -2.39 -0.02 2.14 14 20 H 0.14 3.01 8.14 -2.39 -0.02 2.99 14 21 H 0.28 14.20 8.30 -92.71 -0.77 13.43 14 22 H 0.16 7.15 8.06 -2.91 -0.02 7.13 14 Total: -1.00 -74.47 234.40 -0.40 -74.87 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: 1.25 Total: 5.65 kcal Atomic # 6 Polarization: -72.62 SS G_CDS: 3.85 Total: -68.77 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -1.34 Total: -62.77 kcal Atomic # 8 Polarization: -77.94 SS G_CDS: -4.55 Total: -82.49 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Atomic # 16 Polarization: 94.41 SS G_CDS: -1.63 Total: 92.77 kcal Total: -74.47 -0.40 -74.87 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259957835.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.912 kcal (2) G-P(sol) polarization free energy of solvation -74.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds