Wall clock time and date at job start Mon Mar 30 2020 03:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00275 * 2 1 4 4 H 1.48499 * 109.47281 * 270.00417 * 3 2 1 5 5 H 1.48507 * 109.46654 * 30.00103 * 3 2 1 6 6 H 1.48497 * 109.47246 * 149.99587 * 3 2 1 7 7 C 1.38688 * 120.00381 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99538 * 0.02562 * 7 2 1 9 9 O 1.34843 * 120.00751 * 179.97438 * 7 2 1 10 10 C 1.35544 * 117.00524 * 180.02562 * 9 7 2 11 11 N 1.30404 * 125.82902 * 0.02825 * 10 9 7 12 12 O 1.41654 * 107.92667 * 179.73773 * 11 10 9 13 13 N 1.41660 * 107.63450 * 359.97438 * 12 11 10 14 14 C 1.30692 * 107.82518 * 0.02562 * 13 12 11 15 15 C 1.48372 * 125.86183 * 180.02562 * 14 13 12 16 16 C 1.39317 * 119.72432 * 334.70406 * 15 14 13 17 17 C 1.38445 * 119.06490 * 179.75284 * 16 15 14 18 18 C 1.38749 * 118.50161 * 0.51619 * 17 16 15 19 19 C 1.38301 * 119.36408 * 359.72360 * 18 17 16 20 20 N 1.31718 * 120.89484 * 0.02933 * 19 18 17 21 21 H 0.97001 * 119.99682 * 359.97438 * 1 2 3 22 22 H 1.08002 * 120.46812 * 359.97438 * 16 15 14 23 23 H 1.08001 * 120.74231 * 180.26288 * 17 16 15 24 24 H 1.08002 * 120.31478 * 179.70470 * 18 17 16 25 25 H 1.08000 * 119.55444 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0087 -1.2010 0.0005 8 1 1.4687 -2.1363 0.0005 9 8 3.3571 -1.2011 0.0000 10 6 3.9725 -2.4088 0.0000 11 7 3.3771 -3.5690 0.0000 12 8 4.3770 -4.5723 -0.0061 13 7 5.6362 -3.9232 -0.0104 14 6 5.4217 -2.6340 -0.0066 15 6 6.4653 -1.5793 -0.0096 16 6 7.7312 -1.8586 0.5005 17 6 8.6962 -0.8659 0.4862 18 6 8.3591 0.3777 -0.0284 19 6 7.0811 0.5871 -0.5138 20 7 6.1834 -0.3766 -0.4928 21 1 -0.4850 0.8401 0.0004 22 1 7.9578 -2.8369 0.8981 23 1 9.6877 -1.0542 0.8708 24 1 9.0876 1.1747 -0.0493 25 1 6.8155 1.5538 -0.9154 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259969895.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:27 Heat of formation + Delta-G solvation = 106.514279 kcal Electronic energy + Delta-G solvation = -15417.041444 eV Core-core repulsion = 12594.425900 eV Total energy + Delta-G solvation = -2822.615544 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.57003 -39.69139 -37.72927 -33.40002 -32.61985 -32.53969 -30.80993 -30.31484 -25.86120 -24.51568 -23.59446 -21.59063 -20.68237 -18.15487 -17.63723 -16.88636 -16.17636 -15.85920 -15.43077 -14.91540 -14.19219 -14.00146 -13.64965 -13.36436 -13.29318 -13.02461 -12.43793 -12.02201 -11.60753 -11.05360 -10.93946 -10.76311 -10.38201 -9.96830 -9.85696 -9.47953 -9.44944 -8.99862 -8.57300 -6.57785 -4.30435 0.50232 1.18268 1.62682 2.85286 3.08064 3.17668 3.21388 3.33760 3.59424 3.78485 4.12783 4.13389 4.58514 4.71602 4.78639 4.89861 4.93067 5.02505 5.37175 5.63335 5.75417 5.94563 6.04183 6.12160 6.52156 7.57843 7.74190 7.86811 7.96094 8.73788 9.21521 10.48383 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.021832 B = 0.010838 C = 0.007350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.186348 B = 2582.895453 C = 3808.534036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.252 1.252 7 C -0.388 4.388 8 H 0.115 0.885 9 O -0.158 6.158 10 C 0.260 3.740 11 N -0.363 5.363 12 O 0.011 5.989 13 N -0.277 5.277 14 C 0.137 3.863 15 C 0.185 3.815 16 C -0.134 4.134 17 C -0.078 4.078 18 C -0.162 4.162 19 C 0.106 3.894 20 N -0.441 5.441 21 H 0.284 0.716 22 H 0.143 0.857 23 H 0.141 0.859 24 H 0.139 0.861 25 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.605 3.369 0.742 16.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.134 4.134 3 Si 0.727 3.273 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.176 1.176 7 C -0.466 4.466 8 H 0.133 0.867 9 O -0.048 6.048 10 C 0.046 3.954 11 N -0.152 5.152 12 O -0.120 6.120 13 N -0.020 5.020 14 C -0.049 4.049 15 C 0.047 3.953 16 C -0.156 4.156 17 C -0.104 4.104 18 C -0.183 4.183 19 C -0.053 4.053 20 N -0.150 5.150 21 H 0.095 0.905 22 H 0.161 0.839 23 H 0.158 0.842 24 H 0.157 0.843 25 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 15.488 2.567 0.415 15.704 hybrid contribution 0.948 1.342 0.306 1.671 sum 16.435 3.909 0.721 16.909 Atomic orbital electron populations 1.69632 1.05629 1.29015 1.45192 1.24469 0.95038 0.98962 0.94900 0.86192 0.80564 0.80954 0.79559 1.19288 1.20552 1.17581 1.20936 0.75326 0.97649 1.52717 0.86710 1.83801 1.23780 1.18742 1.78483 1.23705 0.88153 0.87604 0.95927 1.80473 1.05681 0.95376 1.33643 1.93160 1.05881 1.25864 1.87080 1.79683 1.06299 1.04181 1.11883 1.22939 0.90961 0.91427 0.99551 1.18394 0.89764 0.89883 0.97221 1.22104 0.92675 1.01120 0.99690 1.21526 0.99495 0.92628 0.96782 1.22313 0.98347 0.98155 0.99455 1.22834 0.88941 0.97817 0.95734 1.67609 1.35105 0.99373 1.12951 0.90525 0.83934 0.84164 0.84299 0.82016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.55 13.96 55.48 0.77 -23.77 15 2 C 0.07 2.04 5.49 -17.52 -0.10 1.94 15 3 Si 0.90 21.03 28.62 -169.99 -4.86 16.16 15 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 6 H -0.25 -5.85 7.11 56.52 0.40 -5.44 15 7 C -0.39 -11.22 10.19 30.90 0.31 -10.91 15 8 H 0.12 3.56 7.27 -52.49 -0.38 3.18 15 9 O -0.16 -4.23 8.32 0.64 0.01 -4.23 15 10 C 0.26 6.45 7.96 -14.76 -0.12 6.33 15 11 N -0.36 -9.22 11.85 31.79 0.38 -8.85 15 12 O 0.01 0.26 13.63 12.24 0.17 0.43 15 13 N -0.28 -5.63 12.81 34.51 0.44 -5.19 15 14 C 0.14 2.85 7.08 -80.78 -0.57 2.28 15 15 C 0.18 3.26 6.73 -82.94 -0.56 2.70 15 16 C -0.13 -1.78 9.73 -39.10 -0.38 -2.16 15 17 C -0.08 -0.79 10.17 -39.32 -0.40 -1.19 15 18 C -0.16 -1.61 10.11 -39.37 -0.40 -2.00 15 19 C 0.11 1.40 11.18 -17.58 -0.20 1.20 15 20 N -0.44 -7.96 9.89 -9.77 -0.10 -8.06 15 21 H 0.28 7.40 8.31 -40.82 -0.34 7.06 15 22 H 0.14 1.67 8.02 -52.49 -0.42 1.25 15 23 H 0.14 0.90 8.06 -52.49 -0.42 0.48 15 24 H 0.14 0.87 8.06 -52.49 -0.42 0.45 15 25 H 0.16 1.71 8.06 -52.49 -0.42 1.29 15 LS Contribution 246.79 15.07 3.72 3.72 Total: -1.00 -31.75 246.79 -3.09 -34.84 By element: Atomic # 1 Polarization: -2.04 SS G_CDS: -1.21 Total: -3.25 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -2.40 Total: -1.81 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 1.50 Total: -45.86 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: 0.17 Total: -3.80 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.86 Total: 16.16 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.75 -3.09 -34.84 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259969895.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.350 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds