Wall clock time and date at job start Mon Mar 30 2020 03:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00275 * 2 1 4 4 H 1.48499 * 109.47281 * 270.00417 * 3 2 1 5 5 H 1.48507 * 109.46654 * 30.00103 * 3 2 1 6 6 H 1.48497 * 109.47246 * 149.99587 * 3 2 1 7 7 C 1.38688 * 120.00381 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99538 * 0.02562 * 7 2 1 9 9 O 1.34843 * 120.00751 * 179.97438 * 7 2 1 10 10 C 1.35544 * 117.00524 * 180.02562 * 9 7 2 11 11 N 1.30404 * 125.82902 * 0.02825 * 10 9 7 12 12 O 1.41654 * 107.92667 * 179.73773 * 11 10 9 13 13 N 1.41660 * 107.63450 * 359.97438 * 12 11 10 14 14 C 1.30692 * 107.82518 * 0.02562 * 13 12 11 15 15 C 1.48372 * 125.86183 * 180.02562 * 14 13 12 16 16 C 1.39317 * 119.72432 * 334.70406 * 15 14 13 17 17 C 1.38445 * 119.06490 * 179.75284 * 16 15 14 18 18 C 1.38749 * 118.50161 * 0.51619 * 17 16 15 19 19 C 1.38301 * 119.36408 * 359.72360 * 18 17 16 20 20 N 1.31718 * 120.89484 * 0.02933 * 19 18 17 21 21 H 0.97001 * 119.99682 * 359.97438 * 1 2 3 22 22 H 1.08002 * 120.46812 * 359.97438 * 16 15 14 23 23 H 1.08001 * 120.74231 * 180.26288 * 17 16 15 24 24 H 1.08002 * 120.31478 * 179.70470 * 18 17 16 25 25 H 1.08000 * 119.55444 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0087 -1.2010 0.0005 8 1 1.4687 -2.1363 0.0005 9 8 3.3571 -1.2011 0.0000 10 6 3.9725 -2.4088 0.0000 11 7 3.3771 -3.5690 0.0000 12 8 4.3770 -4.5723 -0.0061 13 7 5.6362 -3.9232 -0.0104 14 6 5.4217 -2.6340 -0.0066 15 6 6.4653 -1.5793 -0.0096 16 6 7.7312 -1.8586 0.5005 17 6 8.6962 -0.8659 0.4862 18 6 8.3591 0.3777 -0.0284 19 6 7.0811 0.5871 -0.5138 20 7 6.1834 -0.3766 -0.4928 21 1 -0.4850 0.8401 0.0004 22 1 7.9578 -2.8369 0.8981 23 1 9.6877 -1.0542 0.8708 24 1 9.0876 1.1747 -0.0493 25 1 6.8155 1.5538 -0.9154 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259969895.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:27 Heat of formation + Delta-G solvation = 81.627513 kcal Electronic energy + Delta-G solvation = -15418.120615 eV Core-core repulsion = 12594.425900 eV Total energy + Delta-G solvation = -2823.694715 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.19894 -40.92527 -39.70879 -34.95477 -34.63918 -33.56062 -32.73904 -31.55221 -27.94721 -25.81408 -24.62543 -23.29251 -22.28683 -20.14230 -19.43231 -18.23821 -17.52014 -17.27737 -16.78621 -16.54239 -15.84898 -15.39691 -15.30689 -15.02301 -14.86891 -14.41601 -14.07452 -13.36346 -13.05065 -12.88862 -12.71610 -12.35380 -12.21601 -11.90128 -11.44803 -10.93150 -10.69927 -10.50312 -10.03948 -8.68654 -6.52505 -0.84171 0.12537 0.32207 1.10607 1.22420 1.37575 1.41498 1.55782 1.88065 2.21804 2.31973 2.75145 2.82405 3.21581 3.54698 3.91656 4.00218 4.05317 4.10129 4.36369 4.53017 4.75190 5.08979 5.16229 5.36384 5.65794 5.68725 5.98076 6.59979 6.88908 7.08454 8.42206 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.021832 B = 0.010838 C = 0.007350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.186348 B = 2582.895453 C = 3808.534036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.029 3.971 3 Si 0.974 3.026 4 H -0.257 1.257 5 H -0.259 1.259 6 H -0.252 1.252 7 C -0.416 4.416 8 H 0.074 0.926 9 O -0.163 6.163 10 C 0.251 3.749 11 N -0.391 5.391 12 O 0.001 5.999 13 N -0.266 5.266 14 C 0.155 3.845 15 C 0.137 3.863 16 C -0.125 4.125 17 C -0.067 4.067 18 C -0.130 4.130 19 C 0.088 3.912 20 N -0.492 5.492 21 H 0.295 0.705 22 H 0.154 0.846 23 H 0.189 0.811 24 H 0.189 0.811 25 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.558 5.713 1.097 21.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.174 4.174 3 Si 0.793 3.207 4 H -0.181 1.181 5 H -0.184 1.184 6 H -0.175 1.175 7 C -0.494 4.494 8 H 0.092 0.908 9 O -0.054 6.054 10 C 0.035 3.965 11 N -0.176 5.176 12 O -0.129 6.129 13 N -0.012 5.012 14 C -0.031 4.031 15 C 0.001 3.999 16 C -0.147 4.147 17 C -0.093 4.093 18 C -0.150 4.150 19 C -0.071 4.071 20 N -0.203 5.203 21 H 0.105 0.895 22 H 0.171 0.829 23 H 0.206 0.794 24 H 0.206 0.794 25 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 19.387 4.853 0.772 20.000 hybrid contribution -0.072 0.558 0.189 0.594 sum 19.315 5.411 0.961 20.082 Atomic orbital electron populations 1.69701 1.07180 1.30713 1.45947 1.25380 0.95908 1.02472 0.93678 0.85181 0.79106 0.76138 0.80249 1.18108 1.18367 1.17517 1.20693 0.76408 0.96878 1.55377 0.90793 1.83780 1.22386 1.19455 1.79783 1.24318 0.90215 0.87046 0.94899 1.80398 1.07813 0.96622 1.32739 1.93134 1.06615 1.25373 1.87751 1.79690 1.04257 1.03918 1.13363 1.23470 0.89919 0.92337 0.97407 1.18307 0.90465 0.89541 1.01595 1.22308 0.91401 1.02658 0.98348 1.22099 1.00472 0.91475 0.95211 1.22851 0.97457 0.99204 0.95496 1.23374 0.89951 0.97585 0.96234 1.67419 1.37841 1.00349 1.14669 0.89510 0.82863 0.79401 0.79410 0.80025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.87 13.96 21.62 0.30 -52.56 15 2 C 0.03 1.65 5.49 84.85 0.47 2.11 15 3 Si 0.97 43.41 28.62 68.60 1.96 45.38 15 4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 15 5 H -0.26 -10.59 7.11 99.48 0.71 -9.88 15 6 H -0.25 -11.09 7.11 99.48 0.71 -10.39 15 7 C -0.42 -25.29 10.19 67.93 0.69 -24.60 15 8 H 0.07 4.96 7.27 -2.91 -0.02 4.94 15 9 O -0.16 -9.04 8.32 -20.61 -0.17 -9.21 15 10 C 0.25 12.94 7.96 87.11 0.69 13.63 15 11 N -0.39 -20.91 11.85 -167.19 -1.98 -22.89 15 12 O 0.00 0.04 13.63 71.16 0.97 1.01 15 13 N -0.27 -10.91 12.81 -44.73 -0.57 -11.48 15 14 C 0.15 6.52 7.08 44.22 0.31 6.83 15 15 C 0.14 4.67 6.73 41.98 0.28 4.95 15 16 C -0.13 -2.92 9.73 22.58 0.22 -2.70 15 17 C -0.07 -0.96 10.17 22.44 0.23 -0.73 15 18 C -0.13 -1.81 10.11 22.41 0.23 -1.59 15 19 C 0.09 2.01 11.18 84.72 0.95 2.96 15 20 N -0.49 -17.10 9.89 -184.83 -1.83 -18.93 15 21 H 0.29 15.55 8.31 -92.71 -0.77 14.78 15 22 H 0.15 3.13 8.02 -2.91 -0.02 3.11 15 23 H 0.19 0.97 8.06 -2.91 -0.02 0.95 15 24 H 0.19 0.84 8.06 -2.91 -0.02 0.82 15 25 H 0.18 3.18 8.06 -2.91 -0.02 3.16 15 Total: -1.00 -74.52 246.79 3.98 -70.53 By element: Atomic # 1 Polarization: -3.94 SS G_CDS: 1.24 Total: -2.70 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 4.07 Total: 0.87 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -4.08 Total: -105.87 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.80 Total: -8.21 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.96 Total: 45.38 kcal Total: -74.52 3.98 -70.53 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259969895.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.160 kcal (2) G-P(sol) polarization free energy of solvation -74.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds