Wall clock time and date at job start Mon Mar 30 2020 03:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86806 * 119.99920 * 2 1 4 4 H 1.48498 * 109.47011 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.46993 * 120.00007 * 3 2 1 6 6 H 1.48503 * 109.47090 * 239.99959 * 3 2 1 7 7 C 1.39870 * 120.00360 * 179.72477 * 2 1 3 8 8 H 1.08004 * 119.99704 * 3.14042 * 7 2 1 9 9 C 1.41307 * 120.00375 * 183.14856 * 7 2 1 10 10 N 1.31675 * 120.97069 * 6.76350 * 9 7 2 11 11 S 1.56652 * 108.38463 * 180.02562 * 10 9 7 12 12 C 1.77123 * 95.55234 * 0.02562 * 11 10 9 13 13 C 1.47968 * 127.83296 * 180.02562 * 12 11 10 14 14 C 1.39922 * 120.92163 * 179.69372 * 13 12 11 15 15 C 1.38008 * 118.99484 * 179.75448 * 14 13 12 16 16 N 1.31905 * 120.89193 * 0.53930 * 15 14 13 17 17 C 1.31898 * 122.06115 * 359.72818 * 16 15 14 18 18 C 1.38001 * 120.89541 * 359.97438 * 17 16 15 19 19 N 1.31742 * 104.33802 * 359.75221 * 12 11 10 20 20 H 0.96999 * 119.99705 * 174.83982 * 1 2 3 21 21 H 1.07999 * 120.50524 * 0.02562 * 14 13 12 22 22 H 1.07994 * 119.54785 * 180.29110 * 15 14 13 23 23 H 1.07997 * 119.55497 * 180.02562 * 17 16 15 24 24 H 1.08004 * 120.49988 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 1.2775 2.7465 -0.0006 5 1 3.0962 1.6964 1.2125 6 1 3.0963 1.6965 -1.2125 7 6 2.0079 -1.2112 0.0058 8 1 1.4692 -2.1461 -0.0409 9 6 3.4194 -1.2119 0.0730 10 7 4.0892 -0.0943 0.2635 11 16 5.6185 -0.4328 0.2877 12 6 5.4129 -2.1731 0.0300 13 6 6.4670 -3.2070 -0.0669 14 6 6.1384 -4.5522 -0.2677 15 6 7.1537 -5.4827 -0.3571 16 7 8.4168 -5.1196 -0.2454 17 6 8.7697 -3.8638 -0.0503 18 6 7.8197 -2.8674 0.0454 19 7 4.1084 -2.3392 -0.0499 20 1 -0.4850 -0.8367 -0.0756 21 1 5.1061 -4.8571 -0.3558 22 1 6.9104 -6.5227 -0.5168 23 1 9.8164 -3.6116 0.0350 24 1 8.1158 -1.8412 0.2057 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259980768.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:12 Heat of formation + Delta-G solvation = 69.442606 kcal Electronic energy + Delta-G solvation = -13035.052035 eV Core-core repulsion = 10653.581813 eV Total energy + Delta-G solvation = -2381.470221 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.02634 -38.98393 -34.07871 -33.08149 -31.24870 -30.62800 -27.53081 -25.01552 -23.42661 -21.73757 -19.52199 -18.35495 -17.84563 -16.71527 -15.79448 -15.60562 -14.46521 -14.40244 -13.78481 -13.65823 -13.60387 -12.85770 -12.68735 -11.72944 -11.25487 -11.08739 -10.95654 -10.30340 -9.78647 -9.59700 -9.56171 -9.27128 -9.16514 -8.96295 -8.41196 -7.95025 -7.45763 -4.94151 0.60889 1.15692 2.08071 2.14813 3.11716 3.33286 3.62349 3.82090 3.99554 4.03178 4.26182 4.44625 4.49662 4.90614 5.07007 5.08241 5.16245 5.59114 5.66640 5.82888 6.17304 6.35605 6.65887 6.87764 7.38763 7.68365 7.92748 7.94182 8.36931 8.91402 9.92010 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.054159 B = 0.007296 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.869242 B = 3836.650095 C = 4334.758717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.051 3.949 3 Si 1.128 2.872 4 H -0.314 1.314 5 H -0.269 1.269 6 H -0.286 1.286 7 C -0.440 4.440 8 H 0.091 0.909 9 C 0.343 3.657 10 N -0.660 5.660 11 S 0.216 5.784 12 C 0.059 3.941 13 C 0.046 3.954 14 C -0.134 4.134 15 C 0.096 3.904 16 N -0.487 5.487 17 C 0.098 3.902 18 C -0.153 4.153 19 N -0.473 5.473 20 H 0.285 0.715 21 H 0.145 0.855 22 H 0.159 0.841 23 H 0.159 0.841 24 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.588 -5.176 -0.274 13.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.172 4.172 3 Si 0.961 3.039 4 H -0.246 1.246 5 H -0.197 1.197 6 H -0.214 1.214 7 C -0.488 4.488 8 H 0.109 0.891 9 C 0.090 3.910 10 N -0.505 5.505 11 S 0.355 5.645 12 C -0.228 4.228 13 C 0.035 3.965 14 C -0.158 4.158 15 C -0.060 4.060 16 N -0.197 5.197 17 C -0.058 4.058 18 C -0.176 4.176 19 N -0.196 5.196 20 H 0.097 0.903 21 H 0.163 0.837 22 H 0.176 0.824 23 H 0.177 0.823 24 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 13.062 -3.048 -0.077 13.413 hybrid contribution -1.373 -1.944 -0.156 2.386 sum 11.689 -4.992 -0.233 12.713 Atomic orbital electron populations 1.70672 1.07663 1.32849 1.31325 1.27535 0.95418 1.05251 0.88974 0.82269 0.71491 0.70409 0.79741 1.24572 1.19672 1.21401 1.20088 0.87145 0.96980 1.44620 0.89080 1.20237 0.97184 0.80132 0.93464 1.73112 1.02473 1.26853 1.48074 1.81413 1.12143 1.02081 1.68851 1.27878 0.93514 0.99212 1.02214 1.18108 0.90683 0.91347 0.96408 1.22398 1.02069 0.92310 0.99017 1.22699 0.87527 0.99974 0.95818 1.67581 1.20486 1.19821 1.11856 1.22611 0.99825 0.87690 0.95712 1.22259 0.92089 1.01797 1.01413 1.69047 1.02779 1.28950 1.18777 0.90313 0.83736 0.82420 0.82332 0.84161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.81 13.66 55.54 0.76 -21.05 14 2 C 0.05 1.41 5.51 -17.36 -0.10 1.31 14 3 Si 1.13 28.25 25.65 -169.99 -4.36 23.89 14 4 H -0.31 -7.61 7.11 56.52 0.40 -7.21 14 5 H -0.27 -6.83 6.69 56.52 0.38 -6.45 14 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 14 7 C -0.44 -12.29 9.84 -37.81 -0.37 -12.66 14 8 H 0.09 2.56 8.05 -52.48 -0.42 2.14 14 9 C 0.34 9.19 6.99 -160.63 -1.12 8.07 14 10 N -0.66 -17.13 5.87 20.92 0.12 -17.00 14 11 S 0.22 4.52 22.91 -107.50 -2.46 2.06 14 12 C 0.06 1.22 7.60 -13.60 -0.10 1.11 14 13 C 0.05 0.76 5.91 -104.65 -0.62 0.14 14 14 C -0.13 -1.98 9.83 -39.04 -0.38 -2.36 14 15 C 0.10 1.21 11.17 -17.60 -0.20 1.02 14 16 N -0.49 -6.43 10.34 -13.34 -0.14 -6.57 14 17 C 0.10 1.15 11.17 -17.61 -0.20 0.96 14 18 C -0.15 -2.01 9.75 -39.04 -0.38 -2.39 14 19 N -0.47 -11.51 10.70 -21.02 -0.22 -11.74 14 20 H 0.29 7.42 8.72 -40.82 -0.36 7.07 14 21 H 0.14 2.16 8.02 -52.49 -0.42 1.74 14 22 H 0.16 1.49 8.06 -52.49 -0.42 1.07 14 23 H 0.16 1.31 8.06 -52.49 -0.42 0.89 14 24 H 0.14 1.60 7.63 -52.48 -0.40 1.20 14 LS Contribution 236.35 15.07 3.56 3.56 Total: -1.00 -30.57 236.35 -7.48 -38.05 By element: Atomic # 1 Polarization: -5.13 SS G_CDS: -1.27 Total: -6.39 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -3.47 Total: -4.81 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.52 Total: -56.36 kcal Atomic # 14 Polarization: 28.25 SS G_CDS: -4.36 Total: 23.89 kcal Atomic # 16 Polarization: 4.52 SS G_CDS: -2.46 Total: 2.06 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -30.57 -7.48 -38.05 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259980768.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.490 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds