Wall clock time and date at job start Mon Mar 30 2020 03:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30892 * 1 3 3 Si 1.86810 * 119.99940 * 2 1 4 4 H 1.48503 * 109.46797 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47111 * 119.99472 * 3 2 1 6 6 H 1.48495 * 109.46947 * 239.99905 * 3 2 1 7 7 C 1.39873 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00210 * 152.19979 * 7 2 1 9 9 C 1.41262 * 120.00149 * 332.19918 * 7 2 1 10 10 C 1.41204 * 120.96531 * 331.56790 * 9 7 2 11 11 N 1.31774 * 118.86840 * 179.78493 * 10 9 7 12 12 C 1.32803 * 121.01077 * 0.47586 * 11 10 9 13 13 N 1.37932 * 118.91436 * 179.74932 * 12 11 10 14 14 N 1.32774 * 122.16988 * 359.77083 * 12 11 10 15 15 C 1.31795 * 121.01307 * 359.97438 * 14 12 11 16 16 C 1.50698 * 120.56132 * 180.02562 * 15 14 12 17 17 F 1.39906 * 109.47167 * 243.61285 * 16 15 14 18 18 F 1.39896 * 109.47772 * 3.61303 * 16 15 14 19 19 F 1.39908 * 109.47208 * 123.61245 * 16 15 14 20 20 H 0.96996 * 120.00268 * 173.98515 * 1 2 3 21 21 H 1.08001 * 120.56796 * 0.02562 * 10 9 7 22 22 H 0.97005 * 119.99874 * 180.02562 * 13 12 11 23 23 H 0.96998 * 119.99929 * 0.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 1.2779 2.7465 -0.0006 5 1 3.0966 1.6966 1.2125 6 1 3.0967 1.6965 -1.2125 7 6 2.0083 -1.2113 0.0005 8 1 2.9948 -1.2655 -0.4356 9 6 1.4244 -2.3639 0.5716 10 6 0.4880 -2.2588 1.6233 11 7 -0.0343 -3.3608 2.1226 12 6 0.3148 -4.5549 1.6579 13 7 -0.2551 -5.6803 2.2158 14 7 1.1946 -4.7012 0.6743 15 6 1.7642 -3.6544 0.1115 16 6 2.7610 -3.8322 -1.0047 17 9 4.0111 -3.3572 -0.5935 18 9 2.8614 -5.1894 -1.3286 19 9 2.3360 -3.1148 -2.1282 20 1 -0.4850 -0.8354 -0.0880 21 1 0.2017 -1.2916 2.0092 22 1 -0.0112 -6.5604 1.8888 23 1 -0.8997 -5.5916 2.9352 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259987426.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:09 Heat of formation + Delta-G solvation = -118.148285 kcal Electronic energy + Delta-G solvation = -16561.117815 eV Core-core repulsion = 13186.903431 eV Total energy + Delta-G solvation = -3374.214384 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.047 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.19693 -46.72879 -46.66397 -39.54672 -35.16908 -33.30964 -32.61412 -29.65014 -26.45535 -24.96688 -22.32378 -21.67272 -18.39492 -17.94961 -17.76831 -17.57286 -16.62025 -15.20664 -14.61654 -14.47457 -14.07948 -13.84659 -13.56523 -13.48041 -13.15957 -12.97127 -12.88010 -12.77663 -12.33309 -11.38640 -11.32885 -10.95708 -10.54190 -10.09254 -9.80461 -9.73425 -9.16070 -8.21533 -7.70907 -7.44780 -4.73907 1.99358 2.41105 3.04473 3.12008 3.25369 3.56266 3.80654 4.20191 4.30453 4.73111 4.95100 5.05367 5.51212 5.66541 6.09786 6.30665 6.70156 6.98383 7.39877 7.57035 7.76391 8.06878 8.13322 8.30519 8.53365 9.46697 9.64895 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.023795 B = 0.012799 C = 0.009082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.457184 B = 2187.091614 C = 3082.204761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.041 3.959 3 Si 1.068 2.932 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.485 4.485 8 H 0.092 0.908 9 C 0.002 3.998 10 C 0.099 3.901 11 N -0.519 5.519 12 C 0.430 3.570 13 N -0.849 5.849 14 N -0.498 5.498 15 C -0.051 4.051 16 C 0.541 3.459 17 F -0.185 7.185 18 F -0.184 7.184 19 F -0.175 7.175 20 H 0.298 0.702 21 H 0.157 0.843 22 H 0.399 0.601 23 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.120 -1.720 0.304 2.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.183 4.183 3 Si 0.889 3.111 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.513 4.513 8 H 0.110 0.890 9 C -0.007 4.007 10 C -0.079 4.079 11 N -0.237 5.237 12 C 0.075 3.925 13 N -0.403 5.403 14 N -0.218 5.218 15 C -0.197 4.197 16 C 0.486 3.514 17 F -0.166 7.166 18 F -0.166 7.166 19 F -0.157 7.157 20 H 0.111 0.889 21 H 0.174 0.826 22 H 0.228 0.772 23 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.520 -0.900 0.660 1.886 hybrid contribution 0.513 -1.395 -0.465 1.557 sum 2.033 -2.295 0.195 3.072 Atomic orbital electron populations 1.70547 1.08181 1.34182 1.26281 1.27264 0.95440 1.04751 0.90885 0.83586 0.75771 0.73082 0.78644 1.19440 1.19446 1.19543 1.20578 1.04409 0.93726 1.32612 0.89027 1.18639 0.95010 0.92968 0.94065 1.23039 0.96417 0.95211 0.93242 1.67310 1.27053 0.98337 1.31008 1.18390 0.94699 0.86137 0.93255 1.40934 1.51515 1.04217 1.43586 1.66534 1.10158 1.34793 1.10359 1.20409 1.06610 0.90406 1.02241 1.17638 0.79469 0.72699 0.81568 1.93132 1.44531 1.88473 1.90492 1.93106 1.96379 1.33517 1.93553 1.93164 1.89916 1.78501 1.54085 0.88914 0.82620 0.77197 0.77110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.54 12.50 55.54 0.69 -17.85 14 2 C 0.04 0.94 4.89 -17.34 -0.08 0.86 14 3 Si 1.07 19.58 30.01 -169.99 -5.10 14.48 14 4 H -0.27 -4.91 7.11 56.52 0.40 -4.51 14 5 H -0.27 -4.75 7.11 56.52 0.40 -4.35 14 6 H -0.27 -4.78 7.11 56.52 0.40 -4.38 14 7 C -0.48 -11.83 7.67 -37.82 -0.29 -12.12 14 8 H 0.09 2.22 6.51 -52.49 -0.34 1.88 14 9 C 0.00 0.04 5.20 -106.51 -0.55 -0.51 14 10 C 0.10 2.39 9.40 -16.45 -0.15 2.24 14 11 N -0.52 -12.30 10.42 -13.36 -0.14 -12.43 14 12 C 0.43 9.90 8.65 -322.73 -2.79 7.11 14 13 N -0.85 -15.05 9.04 29.77 0.27 -14.78 14 14 N -0.50 -12.16 9.87 -9.61 -0.09 -12.26 14 15 C -0.05 -1.27 6.35 -81.50 -0.52 -1.78 14 16 C 0.54 12.50 2.84 36.00 0.10 12.60 14 17 F -0.18 -4.11 16.10 2.25 0.04 -4.08 14 18 F -0.18 -4.06 16.90 2.25 0.04 -4.03 14 19 F -0.18 -4.03 16.35 2.25 0.04 -4.00 14 20 H 0.30 7.46 7.06 -40.82 -0.29 7.17 14 21 H 0.16 3.66 6.94 -52.49 -0.36 3.30 14 22 H 0.40 6.24 8.94 -40.82 -0.36 5.87 14 23 H 0.40 6.12 8.94 -40.82 -0.36 5.75 14 LS Contribution 225.91 15.07 3.40 3.40 Total: -1.00 -26.74 225.91 -5.67 -32.41 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -0.52 Total: 10.74 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: -4.29 Total: 8.39 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: 0.73 Total: -57.32 kcal Atomic # 9 Polarization: -12.21 SS G_CDS: 0.11 Total: -12.10 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.10 Total: 14.48 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -26.74 -5.67 -32.41 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259987426.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.740 kcal (2) G-P(sol) polarization free energy of solvation -26.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds