Wall clock time and date at job start Mon Mar 30 2020 03:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30892 * 1 3 3 Si 1.86810 * 119.99940 * 2 1 4 4 H 1.48503 * 109.46797 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47111 * 119.99472 * 3 2 1 6 6 H 1.48495 * 109.46947 * 239.99905 * 3 2 1 7 7 C 1.39873 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00210 * 152.19979 * 7 2 1 9 9 C 1.41262 * 120.00149 * 332.19918 * 7 2 1 10 10 C 1.41204 * 120.96531 * 331.56790 * 9 7 2 11 11 N 1.31774 * 118.86840 * 179.78493 * 10 9 7 12 12 C 1.32803 * 121.01077 * 0.47586 * 11 10 9 13 13 N 1.37932 * 118.91436 * 179.74932 * 12 11 10 14 14 N 1.32774 * 122.16988 * 359.77083 * 12 11 10 15 15 C 1.31795 * 121.01307 * 359.97438 * 14 12 11 16 16 C 1.50698 * 120.56132 * 180.02562 * 15 14 12 17 17 F 1.39906 * 109.47167 * 243.61285 * 16 15 14 18 18 F 1.39896 * 109.47772 * 3.61303 * 16 15 14 19 19 F 1.39908 * 109.47208 * 123.61245 * 16 15 14 20 20 H 0.96996 * 120.00268 * 173.98515 * 1 2 3 21 21 H 1.08001 * 120.56796 * 0.02562 * 10 9 7 22 22 H 0.97005 * 119.99874 * 180.02562 * 13 12 11 23 23 H 0.96998 * 119.99929 * 0.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 1.2779 2.7465 -0.0006 5 1 3.0966 1.6966 1.2125 6 1 3.0967 1.6965 -1.2125 7 6 2.0083 -1.2113 0.0005 8 1 2.9948 -1.2655 -0.4356 9 6 1.4244 -2.3639 0.5716 10 6 0.4880 -2.2588 1.6233 11 7 -0.0343 -3.3608 2.1226 12 6 0.3148 -4.5549 1.6579 13 7 -0.2551 -5.6803 2.2158 14 7 1.1946 -4.7012 0.6743 15 6 1.7642 -3.6544 0.1115 16 6 2.7610 -3.8322 -1.0047 17 9 4.0111 -3.3572 -0.5935 18 9 2.8614 -5.1894 -1.3286 19 9 2.3360 -3.1148 -2.1282 20 1 -0.4850 -0.8354 -0.0880 21 1 0.2017 -1.2916 2.0092 22 1 -0.0112 -6.5604 1.8888 23 1 -0.8997 -5.5916 2.9352 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259987426.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:09 Heat of formation + Delta-G solvation = -133.899831 kcal Electronic energy + Delta-G solvation = -16561.800853 eV Core-core repulsion = 13186.903431 eV Total energy + Delta-G solvation = -3374.897422 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.047 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -51.01432 -48.52755 -48.49044 -41.38378 -36.94330 -35.04563 -34.42418 -31.43662 -28.29396 -26.79445 -24.17353 -23.48270 -20.20507 -19.75040 -19.54599 -19.39613 -18.37403 -16.94346 -16.29301 -16.19801 -15.85065 -15.48246 -15.35064 -15.29488 -14.96719 -14.78610 -14.69318 -14.61397 -14.15046 -13.17687 -12.97556 -12.65807 -11.94846 -11.77653 -11.66524 -11.47764 -10.89333 -10.08691 -9.51602 -9.22430 -6.59216 0.08909 0.58135 1.56405 1.64850 1.73947 1.86299 2.29232 2.51425 2.55426 2.93834 3.10475 3.23255 3.66818 3.85151 4.28424 4.44665 4.88297 5.17857 5.53274 5.68681 5.89583 6.31908 6.47325 6.67231 6.76426 7.73198 7.79406 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.023795 B = 0.012799 C = 0.009082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.457184 B = 2187.091614 C = 3082.204761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.015 3.985 3 Si 1.114 2.886 4 H -0.267 1.267 5 H -0.257 1.257 6 H -0.258 1.258 7 C -0.501 4.501 8 H 0.089 0.911 9 C -0.019 4.019 10 C 0.097 3.903 11 N -0.525 5.525 12 C 0.425 3.575 13 N -0.827 5.827 14 N -0.512 5.512 15 C -0.072 4.072 16 C 0.546 3.454 17 F -0.180 7.180 18 F -0.178 7.178 19 F -0.176 7.176 20 H 0.283 0.717 21 H 0.159 0.841 22 H 0.412 0.588 23 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.403 -1.483 0.602 2.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.205 4.205 3 Si 0.930 3.070 4 H -0.191 1.191 5 H -0.181 1.181 6 H -0.183 1.183 7 C -0.529 4.529 8 H 0.107 0.893 9 C -0.027 4.027 10 C -0.081 4.081 11 N -0.243 5.243 12 C 0.069 3.931 13 N -0.383 5.383 14 N -0.233 5.233 15 C -0.217 4.217 16 C 0.491 3.509 17 F -0.162 7.162 18 F -0.159 7.159 19 F -0.158 7.158 20 H 0.095 0.905 21 H 0.176 0.824 22 H 0.243 0.757 23 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 1.785 -0.720 0.971 2.156 hybrid contribution 0.371 -1.583 -0.517 1.706 sum 2.156 -2.303 0.454 3.187 Atomic orbital electron populations 1.70661 1.08790 1.33165 1.27702 1.28550 0.95352 1.07319 0.89277 0.83032 0.74967 0.69429 0.79599 1.19100 1.18094 1.18271 1.20708 1.04428 0.94379 1.33352 0.89334 1.18871 0.95673 0.93486 0.94712 1.23116 0.96268 0.95619 0.93101 1.67376 1.27230 0.98546 1.31177 1.18915 0.94183 0.87171 0.92801 1.40896 1.50786 1.03406 1.43204 1.66624 1.10967 1.34606 1.11108 1.20725 1.07332 0.90715 1.02926 1.17448 0.79348 0.72944 0.81181 1.93133 1.44140 1.88463 1.90461 1.93112 1.96345 1.33025 1.93465 1.93157 1.89979 1.78599 1.54057 0.90489 0.82405 0.75721 0.75479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -37.43 12.50 21.82 0.27 -37.16 14 2 C 0.01 0.68 4.89 85.23 0.42 1.09 14 3 Si 1.11 37.96 30.01 68.60 2.06 40.01 14 4 H -0.27 -8.91 7.11 99.48 0.71 -8.20 14 5 H -0.26 -8.20 7.11 99.48 0.71 -7.50 14 6 H -0.26 -8.28 7.11 99.48 0.71 -7.58 14 7 C -0.50 -24.25 7.67 23.41 0.18 -24.07 14 8 H 0.09 4.26 6.51 -2.91 -0.02 4.24 14 9 C -0.02 -0.94 5.20 -21.09 -0.11 -1.05 14 10 C 0.10 4.68 9.40 85.43 0.80 5.49 14 11 N -0.52 -24.42 10.42 -196.17 -2.04 -26.46 14 12 C 0.43 19.02 8.65 261.46 2.26 21.28 14 13 N -0.83 -27.54 9.04 -59.73 -0.54 -28.08 14 14 N -0.51 -24.52 9.87 -184.32 -1.82 -26.34 14 15 C -0.07 -3.56 6.35 43.28 0.27 -3.29 14 16 C 0.55 24.89 2.84 71.24 0.20 25.09 14 17 F -0.18 -7.91 16.10 44.97 0.72 -7.19 14 18 F -0.18 -7.70 16.90 44.97 0.76 -6.94 14 19 F -0.18 -8.05 16.35 44.97 0.74 -7.32 14 20 H 0.28 14.31 7.06 -92.71 -0.65 13.66 14 21 H 0.16 7.43 6.94 -2.91 -0.02 7.41 14 22 H 0.41 11.88 8.94 -92.70 -0.83 11.05 14 23 H 0.41 11.64 8.94 -92.71 -0.83 10.81 14 Total: -1.00 -54.97 225.91 3.95 -51.03 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -0.23 Total: 23.90 kcal Atomic # 6 Polarization: 20.52 SS G_CDS: 4.03 Total: 24.55 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -4.13 Total: -118.04 kcal Atomic # 9 Polarization: -23.66 SS G_CDS: 2.22 Total: -21.44 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.06 Total: 40.01 kcal Total: -54.97 3.95 -51.03 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259987426.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.874 kcal (2) G-P(sol) polarization free energy of solvation -54.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds