Wall clock time and date at job start Mon Mar 30 2020 03:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.48532 * 110.99874 * 2 1 4 4 C 1.54943 * 103.22458 * 200.28312 * 3 2 1 5 5 C 1.54593 * 102.92266 * 37.41226 * 4 3 2 6 6 H 1.09009 * 110.30667 * 219.03155 * 5 4 3 7 7 C 1.50695 * 110.31138 * 96.95951 * 5 4 3 8 8 H 1.07995 * 120.00496 * 242.78994 * 7 5 4 9 9 C 1.37880 * 119.99572 * 62.78927 * 7 5 4 10 10 N 1.31511 * 120.00327 * 0.02562 * 9 7 5 11 11 Si 1.86798 * 119.99951 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47297 * 59.99744 * 11 9 7 13 13 H 1.48503 * 109.47261 * 299.99924 * 11 9 7 14 14 H 1.48500 * 109.47454 * 179.97438 * 11 9 7 15 15 C 1.48124 * 111.00546 * 242.53818 * 2 1 3 16 16 H 1.08998 * 109.94138 * 26.49877 * 15 2 1 17 17 C 1.50695 * 110.00144 * 265.13255 * 15 2 1 18 18 C 1.38668 * 120.42245 * 142.50012 * 17 15 2 19 19 C 1.38622 * 118.42402 * 180.02562 * 18 17 15 20 20 C 1.38228 * 119.16394 * 359.97438 * 19 18 17 21 21 N 1.31855 * 120.75794 * 359.97438 * 20 19 18 22 22 C 1.31881 * 121.72923 * 359.70703 * 21 20 19 23 23 H 1.08997 * 109.46941 * 60.12772 * 1 2 3 24 24 H 1.09003 * 109.46751 * 180.13266 * 1 2 3 25 25 H 1.09001 * 109.46641 * 300.12795 * 1 2 3 26 26 H 1.08994 * 110.66811 * 81.84638 * 3 2 1 27 27 H 1.08998 * 110.66422 * 318.71020 * 3 2 1 28 28 H 1.09004 * 110.71580 * 279.05373 * 4 3 2 29 29 H 1.08993 * 110.87435 * 155.84289 * 4 3 2 30 30 H 0.97006 * 119.99995 * 359.97438 * 10 9 7 31 31 H 1.08010 * 120.78615 * 359.97438 * 18 17 15 32 32 H 1.08008 * 120.41988 * 179.97438 * 19 18 17 33 33 H 1.07996 * 119.62315 * 179.97438 * 20 19 18 34 34 H 1.08007 * 119.62122 * 180.31007 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4492 1.2106 -0.5229 5 6 3.2982 0.1053 -1.5931 6 1 4.1479 -0.5766 -1.5552 7 6 3.1811 0.7180 -2.9649 8 1 2.2801 0.5783 -3.5437 9 6 4.2245 1.4569 -3.4812 10 7 5.3219 1.6267 -2.7767 11 14 4.0791 2.2170 -5.1813 12 1 2.9278 3.1547 -5.2076 13 1 3.8672 1.1447 -6.1865 14 1 5.3265 2.9565 -5.5013 15 6 2.0000 -0.6377 -1.2270 16 1 1.2772 -0.5437 -2.0374 17 6 2.2970 -2.0917 -0.9651 18 6 2.0520 -3.0453 -1.9415 19 6 2.3400 -4.3710 -1.6561 20 6 2.8586 -4.6959 -0.4167 21 7 3.0797 -3.7621 0.4876 22 6 2.8235 -2.4907 0.2487 23 1 -0.3633 0.5118 -0.8911 24 1 -0.3633 -1.0277 0.0024 25 1 -0.3633 0.5158 0.8889 26 1 2.0041 1.7977 1.0095 27 1 1.4238 2.0204 -0.6730 28 1 4.1115 0.8836 0.2787 29 1 3.8152 2.1342 -0.9712 30 1 5.3973 1.2323 -1.8936 31 1 1.6458 -2.7621 -2.9014 32 1 2.1615 -5.1403 -2.3929 33 1 3.0852 -5.7263 -0.1863 34 1 3.0224 -1.7533 1.0124 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260004969.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:07 Heat of formation + Delta-G solvation = 33.773597 kcal Electronic energy + Delta-G solvation = -16438.931343 eV Core-core repulsion = 13950.253626 eV Total energy + Delta-G solvation = -2488.677716 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.94136 -38.07626 -33.58370 -32.39962 -31.21123 -30.34346 -27.60553 -25.35298 -23.90558 -23.13984 -22.35232 -20.14665 -19.51420 -17.07782 -16.73069 -15.76528 -15.42783 -14.46903 -14.02602 -13.86665 -13.55495 -13.35065 -13.20229 -12.76831 -12.62267 -12.04511 -11.76274 -11.46849 -10.97417 -10.80325 -10.72119 -10.43196 -10.29217 -10.13972 -9.91177 -9.30391 -9.08155 -8.65609 -8.38138 -8.29604 -7.94788 -6.40996 -4.15464 1.56840 1.71321 3.38198 3.38874 3.57994 4.23165 4.43228 4.56765 4.86461 5.21149 5.25700 5.39803 5.51109 5.52026 5.56302 5.63123 5.79992 5.91696 6.03427 6.09592 6.13794 6.18510 6.30308 6.43704 6.49723 6.75774 6.80181 6.90228 7.14995 7.25904 7.37237 7.48090 7.60339 8.13691 8.32154 8.40095 8.78689 9.56328 10.96437 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.024228 B = 0.009049 C = 0.007741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.432077 B = 3093.601377 C = 3616.187425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.523 5.523 3 C 0.045 3.955 4 C -0.121 4.121 5 C 0.041 3.959 6 H 0.026 0.974 7 C -0.596 4.596 8 H 0.047 0.953 9 C 0.022 3.978 10 N -0.907 5.907 11 Si 1.065 2.935 12 H -0.289 1.289 13 H -0.288 1.288 14 H -0.282 1.282 15 C 0.114 3.886 16 H 0.059 0.941 17 C -0.096 4.096 18 C -0.077 4.077 19 C -0.178 4.178 20 C 0.076 3.924 21 N -0.493 5.493 22 C 0.120 3.880 23 H 0.026 0.974 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.274 0.726 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.147 0.853 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.504 -6.003 3.077 10.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.246 5.246 3 C -0.083 4.083 4 C -0.160 4.160 5 C 0.022 3.978 6 H 0.044 0.956 7 C -0.634 4.634 8 H 0.066 0.934 9 C -0.183 4.183 10 N -0.543 5.543 11 Si 0.893 3.107 12 H -0.215 1.215 13 H -0.215 1.215 14 H -0.207 1.207 15 C 0.006 3.994 16 H 0.077 0.923 17 C -0.098 4.098 18 C -0.103 4.103 19 C -0.198 4.198 20 C -0.081 4.081 21 N -0.202 5.202 22 C -0.037 4.037 23 H 0.044 0.956 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.164 0.836 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.197 -5.601 3.247 8.962 hybrid contribution -1.574 -0.320 -0.550 1.698 sum -7.771 -5.920 2.697 10.135 Atomic orbital electron populations 1.22429 0.89175 1.01109 1.00190 1.64590 1.06958 1.15814 1.37255 1.23104 0.97102 0.88762 0.99284 1.22698 0.93617 1.01975 0.97690 1.19639 0.90947 0.92321 0.94885 0.95613 1.21956 1.04087 1.36653 1.00684 0.93428 1.25743 0.92529 0.95429 1.04591 1.70781 1.27217 1.42981 1.13302 0.83596 0.75977 0.76343 0.74771 1.21515 1.21469 1.20677 1.21495 0.99087 0.88899 0.89945 0.92266 1.20970 0.97734 0.96446 0.94653 1.21483 0.97261 0.92506 0.99061 1.21996 1.02247 0.96887 0.98631 1.22590 0.96704 0.98694 0.90097 1.67691 1.16377 1.01909 1.34191 1.22625 0.93368 0.91849 0.95840 0.95586 0.92296 0.91948 0.91563 0.93868 0.93785 0.90307 0.91461 0.85262 0.85485 0.83610 0.82440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.41 60.07 0.57 0.88 16 2 N -0.52 -9.65 4.41 -231.98 -1.02 -10.67 16 3 C 0.04 0.86 6.56 -1.90 -0.01 0.85 16 4 C -0.12 -2.70 5.43 -24.87 -0.13 -2.84 16 5 C 0.04 0.99 2.18 -90.42 -0.20 0.79 16 6 H 0.03 0.69 7.54 -51.92 -0.39 0.30 16 7 C -0.60 -15.88 8.51 -34.44 -0.29 -16.17 16 8 H 0.05 1.27 7.34 -52.49 -0.39 0.88 16 9 C 0.02 0.60 5.09 -17.82 -0.09 0.51 16 10 N -0.91 -26.33 12.98 55.43 0.72 -25.61 16 11 Si 1.06 24.40 29.90 -169.99 -5.08 19.31 16 12 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 C 0.11 2.34 2.35 -67.67 -0.16 2.18 16 16 H 0.06 1.26 6.86 -51.93 -0.36 0.91 16 17 C -0.10 -1.82 4.76 -104.48 -0.50 -2.32 16 18 C -0.08 -1.32 9.84 -39.28 -0.39 -1.70 16 19 C -0.18 -2.64 10.11 -39.44 -0.40 -3.04 16 20 C 0.08 1.17 11.18 -17.55 -0.20 0.97 16 21 N -0.49 -8.91 10.36 -13.25 -0.14 -9.04 16 22 C 0.12 2.26 10.51 -17.55 -0.18 2.08 16 23 H 0.03 0.41 8.00 -51.93 -0.42 -0.01 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.04 0.85 8.00 -51.93 -0.42 0.43 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.08 1.95 6.52 -51.93 -0.34 1.61 16 30 H 0.27 7.90 6.07 -40.82 -0.25 7.65 16 31 H 0.13 2.08 8.06 -52.48 -0.42 1.65 16 32 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16 33 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.16 2.96 7.68 -52.48 -0.40 2.56 16 LS Contribution 279.65 15.07 4.21 4.21 Total: -1.00 -29.14 279.65 -8.00 -37.14 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -4.71 Total: 2.47 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -1.99 Total: -17.81 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -0.44 Total: -45.32 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -5.08 Total: 19.31 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.14 -8.00 -37.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004969.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.913 kcal (2) G-P(sol) polarization free energy of solvation -29.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds