Wall clock time and date at job start Mon Mar 30 2020 03:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.48532 * 110.99874 * 2 1 4 4 C 1.54943 * 103.22458 * 200.28312 * 3 2 1 5 5 C 1.54593 * 102.92266 * 37.41226 * 4 3 2 6 6 H 1.09009 * 110.30667 * 219.03155 * 5 4 3 7 7 C 1.50695 * 110.31138 * 96.95951 * 5 4 3 8 8 H 1.07995 * 120.00496 * 242.78994 * 7 5 4 9 9 C 1.37880 * 119.99572 * 62.78927 * 7 5 4 10 10 N 1.31511 * 120.00327 * 0.02562 * 9 7 5 11 11 Si 1.86798 * 119.99951 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47297 * 59.99744 * 11 9 7 13 13 H 1.48503 * 109.47261 * 299.99924 * 11 9 7 14 14 H 1.48500 * 109.47454 * 179.97438 * 11 9 7 15 15 C 1.48124 * 111.00546 * 242.53818 * 2 1 3 16 16 H 1.08998 * 109.94138 * 26.49877 * 15 2 1 17 17 C 1.50695 * 110.00144 * 265.13255 * 15 2 1 18 18 C 1.38668 * 120.42245 * 142.50012 * 17 15 2 19 19 C 1.38622 * 118.42402 * 180.02562 * 18 17 15 20 20 C 1.38228 * 119.16394 * 359.97438 * 19 18 17 21 21 N 1.31855 * 120.75794 * 359.97438 * 20 19 18 22 22 C 1.31881 * 121.72923 * 359.70703 * 21 20 19 23 23 H 1.08997 * 109.46941 * 60.12772 * 1 2 3 24 24 H 1.09003 * 109.46751 * 180.13266 * 1 2 3 25 25 H 1.09001 * 109.46641 * 300.12795 * 1 2 3 26 26 H 1.08994 * 110.66811 * 81.84638 * 3 2 1 27 27 H 1.08998 * 110.66422 * 318.71020 * 3 2 1 28 28 H 1.09004 * 110.71580 * 279.05373 * 4 3 2 29 29 H 1.08993 * 110.87435 * 155.84289 * 4 3 2 30 30 H 0.97006 * 119.99995 * 359.97438 * 10 9 7 31 31 H 1.08010 * 120.78615 * 359.97438 * 18 17 15 32 32 H 1.08008 * 120.41988 * 179.97438 * 19 18 17 33 33 H 1.07996 * 119.62315 * 179.97438 * 20 19 18 34 34 H 1.08007 * 119.62122 * 180.31007 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4492 1.2106 -0.5229 5 6 3.2982 0.1053 -1.5931 6 1 4.1479 -0.5766 -1.5552 7 6 3.1811 0.7180 -2.9649 8 1 2.2801 0.5783 -3.5437 9 6 4.2245 1.4569 -3.4812 10 7 5.3219 1.6267 -2.7767 11 14 4.0791 2.2170 -5.1813 12 1 2.9278 3.1547 -5.2076 13 1 3.8672 1.1447 -6.1865 14 1 5.3265 2.9565 -5.5013 15 6 2.0000 -0.6377 -1.2270 16 1 1.2772 -0.5437 -2.0374 17 6 2.2970 -2.0917 -0.9651 18 6 2.0520 -3.0453 -1.9415 19 6 2.3400 -4.3710 -1.6561 20 6 2.8586 -4.6959 -0.4167 21 7 3.0797 -3.7621 0.4876 22 6 2.8235 -2.4907 0.2487 23 1 -0.3633 0.5118 -0.8911 24 1 -0.3633 -1.0277 0.0024 25 1 -0.3633 0.5158 0.8889 26 1 2.0041 1.7977 1.0095 27 1 1.4238 2.0204 -0.6730 28 1 4.1115 0.8836 0.2787 29 1 3.8152 2.1342 -0.9712 30 1 5.3973 1.2323 -1.8936 31 1 1.6458 -2.7621 -2.9014 32 1 2.1615 -5.1403 -2.3929 33 1 3.0852 -5.7263 -0.1863 34 1 3.0224 -1.7533 1.0124 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260004969.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:07 Heat of formation + Delta-G solvation = 15.781475 kcal Electronic energy + Delta-G solvation = -16439.711540 eV Core-core repulsion = 13950.253626 eV Total energy + Delta-G solvation = -2489.457913 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.34748 -39.62412 -35.50844 -33.78933 -32.55139 -32.08674 -29.25798 -26.98973 -25.67630 -24.48817 -23.79645 -21.83062 -21.17335 -19.06267 -18.05204 -17.15233 -16.88845 -16.12944 -15.66894 -15.36305 -15.15040 -14.92574 -14.65403 -14.25336 -13.93586 -13.63361 -13.46402 -13.03778 -12.75071 -12.37794 -12.30889 -12.11387 -11.99831 -11.93380 -11.69121 -10.69827 -10.60399 -10.44430 -10.39725 -9.74917 -9.44931 -8.59129 -6.34268 0.25833 0.37956 1.51619 1.58264 1.77396 2.55182 2.88134 3.08900 3.18433 3.60674 3.89598 3.96847 4.03603 4.14581 4.20666 4.25061 4.31162 4.47481 4.59096 4.64798 4.69029 4.78167 4.90944 4.93953 5.02281 5.16598 5.22098 5.35499 5.40607 5.53169 5.75923 5.85550 6.09963 6.11764 6.22391 6.62623 7.07949 7.45735 8.78141 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.024228 B = 0.009049 C = 0.007741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.432077 B = 3093.601377 C = 3616.187425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.521 5.521 3 C 0.054 3.946 4 C -0.117 4.117 5 C 0.037 3.963 6 H -0.011 1.011 7 C -0.602 4.602 8 H 0.044 0.956 9 C -0.027 4.027 10 N -0.933 5.933 11 Si 1.109 2.891 12 H -0.271 1.271 13 H -0.272 1.272 14 H -0.286 1.286 15 C 0.127 3.873 16 H 0.047 0.953 17 C -0.118 4.118 18 C -0.089 4.089 19 C -0.165 4.165 20 C 0.077 3.923 21 N -0.511 5.511 22 C 0.108 3.892 23 H 0.023 0.977 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.049 0.951 30 H 0.262 0.738 31 H 0.136 0.864 32 H 0.168 0.832 33 H 0.186 0.814 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.974 -7.310 2.780 11.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.245 5.245 3 C -0.074 4.074 4 C -0.156 4.156 5 C 0.018 3.982 6 H 0.007 0.993 7 C -0.640 4.640 8 H 0.063 0.937 9 C -0.226 4.226 10 N -0.570 5.570 11 Si 0.931 3.069 12 H -0.197 1.197 13 H -0.198 1.198 14 H -0.211 1.211 15 C 0.018 3.982 16 H 0.065 0.935 17 C -0.121 4.121 18 C -0.116 4.116 19 C -0.184 4.184 20 C -0.080 4.080 21 N -0.220 5.220 22 C -0.049 4.049 23 H 0.042 0.958 24 H 0.085 0.915 25 H 0.105 0.895 26 H 0.112 0.888 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.154 0.846 32 H 0.186 0.814 33 H 0.203 0.797 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.693 -6.914 2.968 10.761 hybrid contribution -1.116 -0.031 -0.442 1.200 sum -8.808 -6.945 2.527 11.498 Atomic orbital electron populations 1.22506 0.86977 1.02032 1.01254 1.64644 1.08964 1.14923 1.35947 1.23046 0.94502 0.89340 1.00465 1.22525 0.95999 0.99888 0.97145 1.19554 0.91670 0.92446 0.94539 0.99274 1.22273 1.03732 1.36133 1.01873 0.93732 1.27088 0.92132 0.95810 1.07529 1.70886 1.28422 1.44427 1.13290 0.83032 0.76279 0.76345 0.71243 1.19669 1.19788 1.21129 1.21186 0.96714 0.89898 0.90368 0.93547 1.20894 0.99611 0.95905 0.95662 1.21740 0.97443 0.93501 0.98903 1.22406 1.00182 0.96617 0.99197 1.23306 0.95113 0.99841 0.89730 1.67708 1.17023 1.01861 1.35441 1.22479 0.94271 0.92391 0.95714 0.95795 0.91498 0.89500 0.88769 0.94484 0.93701 0.93221 0.92715 0.84634 0.81424 0.79713 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 9.41 127.69 1.20 1.81 16 2 N -0.52 -18.91 4.41 -887.85 -3.91 -22.82 16 3 C 0.05 2.04 6.56 86.65 0.57 2.61 16 4 C -0.12 -5.39 5.43 31.80 0.17 -5.22 16 5 C 0.04 1.84 2.18 -10.66 -0.02 1.81 16 6 H -0.01 -0.61 7.54 -2.38 -0.02 -0.63 16 7 C -0.60 -32.81 8.51 25.60 0.22 -32.60 16 8 H 0.04 2.40 7.34 -2.91 -0.02 2.38 16 9 C -0.03 -1.48 5.09 84.66 0.43 -1.05 16 10 N -0.93 -55.88 12.98 21.45 0.28 -55.61 16 11 Si 1.11 49.21 29.90 68.60 2.05 51.26 16 12 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 13 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 14 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 15 C 0.13 5.26 2.35 44.27 0.10 5.37 16 16 H 0.05 2.00 6.86 -2.39 -0.02 1.99 16 17 C -0.12 -4.50 4.76 -19.77 -0.09 -4.60 16 18 C -0.09 -2.96 9.84 22.46 0.22 -2.73 16 19 C -0.16 -4.37 10.11 22.36 0.23 -4.15 16 20 C 0.08 2.14 11.18 84.69 0.95 3.09 16 21 N -0.51 -17.81 10.36 -195.84 -2.03 -19.84 16 22 C 0.11 4.06 10.51 84.67 0.89 4.95 16 23 H 0.02 0.71 8.00 -2.39 -0.02 0.69 16 24 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 27 H 0.04 1.44 8.00 -2.39 -0.02 1.42 16 28 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.05 2.56 6.52 -2.39 -0.02 2.54 16 30 H 0.26 15.87 6.07 -92.70 -0.56 15.31 16 31 H 0.14 4.21 8.06 -2.91 -0.02 4.18 16 32 H 0.17 3.06 8.06 -2.91 -0.02 3.04 16 33 H 0.19 3.59 8.06 -2.91 -0.02 3.57 16 34 H 0.15 5.68 7.68 -2.91 -0.02 5.66 16 Total: -1.00 -64.37 279.65 2.53 -61.84 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 1.28 Total: 15.89 kcal Atomic # 6 Polarization: -35.58 SS G_CDS: 4.86 Total: -30.71 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -5.66 Total: -98.27 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 2.05 Total: 51.26 kcal Total: -64.37 2.53 -61.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004969.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.623 kcal (2) G-P(sol) polarization free energy of solvation -64.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds