Wall clock time and date at job start Mon Mar 30 2020 03:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86808 * 120.00093 * 2 1 4 4 H 1.48501 * 109.47092 * 270.00571 * 3 2 1 5 5 H 1.48502 * 109.46693 * 30.00433 * 3 2 1 6 6 H 1.48495 * 109.47154 * 149.99939 * 3 2 1 7 7 C 1.39970 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99960 * 197.42835 * 7 2 1 9 9 C 1.41090 * 119.99674 * 17.42323 * 7 2 1 10 10 C 1.41301 * 120.95454 * 23.28113 * 9 7 2 11 11 N 1.31655 * 118.88364 * 180.22753 * 10 9 7 12 12 C 1.33028 * 120.99958 * 359.49440 * 11 10 9 13 13 C 1.47750 * 118.92760 * 180.26590 * 12 11 10 14 14 C 1.39134 * 123.05732 * 179.97438 * 13 12 11 15 15 N 1.29594 * 116.92850 * 179.81547 * 14 13 12 16 16 S 1.69482 * 107.80725 * 0.42107 * 15 14 13 17 17 C 1.37787 * 123.06495 * 0.25008 * 13 12 11 18 18 N 1.33023 * 122.13507 * 0.52383 * 12 11 10 19 19 C 1.31653 * 121.00171 * 359.74062 * 18 12 11 20 20 H 0.96994 * 119.99486 * 359.97438 * 1 2 3 21 21 H 1.07999 * 120.55598 * 359.95460 * 10 9 7 22 22 H 1.08004 * 121.53328 * 0.02562 * 14 13 12 23 23 H 1.07997 * 127.30893 * 359.93423 * 17 13 12 24 24 H 1.07994 * 120.55462 * 179.97438 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4398 2.6526 0.7002 6 1 3.5399 1.4402 0.7000 7 6 2.0083 -1.2121 -0.0005 8 1 3.0510 -1.2337 0.2796 9 6 1.3514 -2.4058 -0.3669 10 6 0.1953 -2.3794 -1.1790 11 7 -0.3878 -3.5174 -1.4925 12 6 0.1013 -4.6783 -1.0652 13 6 -0.5863 -5.9284 -1.4494 14 6 -0.1494 -7.1880 -1.0516 15 7 -0.8450 -8.2047 -1.4542 16 16 -2.1247 -7.6165 -2.3969 17 6 -1.7155 -5.9532 -2.2386 18 7 1.1865 -4.7500 -0.2992 19 6 1.8309 -3.6620 0.0672 20 1 -0.4849 0.8400 0.0004 21 1 -0.2058 -1.4411 -1.5329 22 1 0.7271 -7.3126 -0.4330 23 1 -2.2337 -5.1078 -2.6666 24 1 2.7110 -3.7285 0.6896 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260013204.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:01 Heat of formation + Delta-G solvation = 66.894939 kcal Electronic energy + Delta-G solvation = -13029.068141 eV Core-core repulsion = 10647.487445 eV Total energy + Delta-G solvation = -2381.580696 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.34706 -37.79894 -34.53702 -32.25427 -31.47577 -29.80712 -26.30330 -24.31941 -22.78851 -21.90649 -19.47801 -17.87790 -17.46777 -16.10013 -15.82750 -15.03664 -14.14124 -13.95481 -13.68289 -12.94645 -12.71934 -12.34654 -12.16065 -11.98050 -11.57530 -11.25777 -10.92852 -10.84129 -10.21916 -9.84652 -9.52219 -9.39438 -9.28161 -8.65148 -7.88156 -7.62137 -7.24062 -4.78647 1.08173 2.01156 2.14714 2.29531 2.71365 2.80183 2.85593 2.88612 3.31409 3.59162 4.35868 5.14040 5.33905 5.49078 5.53942 5.94789 6.21392 6.32985 6.35652 6.62376 6.67547 6.72208 7.08726 7.41937 7.54228 7.92335 8.12063 8.23669 8.70161 9.61694 9.65567 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.072194 B = 0.005665 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.752962 B = 4941.375535 C = 5262.000104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.069 3.931 3 Si 0.923 3.077 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.414 4.414 8 H 0.092 0.908 9 C 0.014 3.986 10 C 0.075 3.925 11 N -0.486 5.486 12 C 0.184 3.816 13 C -0.057 4.057 14 C 0.120 3.880 15 N -0.474 5.474 16 S 0.207 5.793 17 C -0.196 4.196 18 N -0.481 5.481 19 C 0.016 3.984 20 H 0.293 0.707 21 H 0.161 0.839 22 H 0.189 0.811 23 H 0.184 0.816 24 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.749 -1.856 -2.153 2.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.153 4.153 3 Si 0.746 3.254 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.443 4.443 8 H 0.110 0.890 9 C 0.007 3.993 10 C -0.100 4.100 11 N -0.198 5.198 12 C -0.075 4.075 13 C -0.075 4.075 14 C -0.080 4.080 15 N -0.292 5.292 16 S 0.358 5.642 17 C -0.346 4.346 18 N -0.193 5.193 19 C -0.156 4.156 20 H 0.104 0.896 21 H 0.178 0.822 22 H 0.206 0.794 23 H 0.202 0.798 24 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.424 -4.608 -2.911 5.965 hybrid contribution 1.688 3.388 0.908 3.893 sum -0.736 -1.220 -2.003 2.458 Atomic orbital electron populations 1.69734 1.07972 1.30871 1.30629 1.26195 0.94963 1.02391 0.91787 0.86036 0.80411 0.79066 0.79870 1.18700 1.19785 1.18072 1.19682 0.98343 0.90559 1.35755 0.88974 1.19331 0.94236 0.94499 0.91242 1.23317 0.95301 0.94629 0.96728 1.67696 1.31386 0.98666 1.22036 1.19203 0.94676 0.89193 1.04428 1.18724 0.95791 0.92443 1.00563 1.22917 0.99734 0.87497 0.97902 1.76524 1.07714 1.27915 1.17013 1.83598 1.33070 0.96649 1.50889 1.26788 1.01096 1.02388 1.04343 1.67493 1.07074 1.34018 1.10670 1.22780 1.01771 0.87684 1.03383 0.89576 0.82190 0.79419 0.79823 0.84196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.45 10.91 55.55 0.61 -16.85 14 2 C 0.07 1.49 5.19 -17.33 -0.09 1.40 14 3 Si 0.92 16.03 29.59 -169.99 -5.03 11.00 14 4 H -0.26 -4.54 7.11 56.52 0.40 -4.14 14 5 H -0.27 -4.68 7.11 56.52 0.40 -4.27 14 6 H -0.26 -4.40 7.11 56.52 0.40 -4.00 14 7 C -0.41 -9.52 9.09 -37.85 -0.34 -9.86 14 8 H 0.09 1.97 7.90 -52.49 -0.41 1.55 14 9 C 0.01 0.35 5.61 -106.49 -0.60 -0.25 14 10 C 0.08 1.87 9.99 -16.46 -0.16 1.71 14 11 N -0.49 -11.98 9.88 -10.57 -0.10 -12.09 14 12 C 0.18 4.38 7.58 -156.45 -1.19 3.19 14 13 C -0.06 -1.18 5.87 -105.84 -0.62 -1.80 14 14 C 0.12 2.26 10.83 -18.16 -0.20 2.06 14 15 N -0.47 -8.55 12.02 29.36 0.35 -8.20 14 16 S 0.21 3.28 23.69 -107.50 -2.55 0.73 14 17 C -0.20 -3.54 10.94 30.57 0.33 -3.21 14 18 N -0.48 -11.36 9.73 -10.58 -0.10 -11.46 14 19 C 0.02 0.36 11.11 -16.47 -0.18 0.18 14 20 H 0.29 5.94 8.30 -40.82 -0.34 5.61 14 21 H 0.16 3.97 6.17 -52.49 -0.32 3.65 14 22 H 0.19 3.33 7.81 -52.48 -0.41 2.92 14 23 H 0.18 3.15 8.04 -52.49 -0.42 2.72 14 24 H 0.14 2.88 8.06 -52.49 -0.42 2.46 14 LS Contribution 239.63 15.07 3.61 3.61 Total: -1.00 -25.95 239.63 -7.39 -33.34 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -1.13 Total: 6.49 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -3.05 Total: -6.57 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.75 Total: -48.60 kcal Atomic # 14 Polarization: 16.03 SS G_CDS: -5.03 Total: 11.00 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -2.55 Total: 0.73 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -25.95 -7.39 -33.34 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260013204.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.238 kcal (2) G-P(sol) polarization free energy of solvation -25.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds