Wall clock time and date at job start Mon Mar 30 2020 03:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30814 * 1 3 3 Si 1.86794 * 120.00192 * 2 1 4 4 H 1.48504 * 109.47369 * 83.73177 * 3 2 1 5 5 H 1.48496 * 109.47262 * 203.73526 * 3 2 1 6 6 H 1.48508 * 109.47055 * 323.73279 * 3 2 1 7 7 C 1.40065 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00235 * 20.17768 * 7 2 1 9 9 C 1.40754 * 119.99865 * 200.17211 * 7 2 1 10 10 C 1.39818 * 123.45001 * 24.12555 * 9 7 2 11 11 N 1.29284 * 117.05576 * 180.02562 * 10 9 7 12 12 S 1.69390 * 108.41967 * 359.97438 * 11 10 9 13 13 C 1.40611 * 123.44837 * 203.83193 * 9 7 2 14 14 C 1.47143 * 127.41086 * 359.96054 * 13 9 7 15 15 C 1.40307 * 120.60615 * 179.72350 * 14 13 9 16 16 C 1.38213 * 118.23765 * 179.73382 * 15 14 13 17 17 N 1.32505 * 119.22901 * 0.54226 * 16 15 14 18 18 C 1.31881 * 121.16948 * 359.71593 * 17 16 15 19 19 N 1.31570 * 121.94522 * 0.02562 * 18 17 16 20 20 H 0.97000 * 120.00459 * 173.24645 * 1 2 3 21 21 H 1.07999 * 121.47011 * 359.97438 * 10 9 7 22 22 H 1.08004 * 120.87718 * 359.97438 * 15 14 13 23 23 H 1.08002 * 120.37932 * 180.28159 * 16 15 14 24 24 H 1.08004 * 119.03256 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3573 2.1228 1.3917 5 1 3.5996 1.4055 -0.5635 6 1 1.5120 2.6108 -0.8283 7 6 2.0084 -1.2130 0.0005 8 1 1.5181 -2.1198 -0.3217 9 6 3.3512 -1.2503 0.4209 10 6 3.9158 -0.3042 1.2818 11 7 5.1626 -0.4572 1.5873 12 16 5.7416 -1.8391 0.7971 13 6 4.2606 -2.2461 0.0228 14 6 4.0016 -3.3893 -0.8666 15 6 5.0233 -4.3001 -1.1751 16 6 4.7245 -5.3594 -2.0112 17 7 3.4975 -5.4731 -2.4982 18 6 2.5588 -4.5979 -2.1946 19 7 2.7910 -3.5756 -1.3997 20 1 -0.4851 -0.8342 -0.0988 21 1 3.3361 0.5185 1.6736 22 1 6.0158 -4.1789 -0.7669 23 1 5.4835 -6.0836 -2.2678 24 1 1.5704 -4.7236 -2.6115 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260015903.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:21 Heat of formation + Delta-G solvation = 55.221313 kcal Electronic energy + Delta-G solvation = -13394.969919 eV Core-core repulsion = 11012.883016 eV Total energy + Delta-G solvation = -2382.086903 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.45456 -39.53335 -35.79663 -34.75609 -33.22516 -31.67888 -28.29121 -25.13956 -25.01520 -24.03262 -21.49219 -20.19384 -18.55911 -17.54888 -17.39754 -16.49740 -16.24165 -15.80054 -15.43959 -15.00185 -14.63853 -14.38109 -14.01799 -13.74667 -12.93011 -12.28402 -12.10575 -12.03668 -11.83268 -11.47186 -11.18708 -11.08641 -10.84610 -9.93188 -9.88085 -9.53383 -9.35531 -6.58125 -0.58260 0.27620 0.76543 0.98246 1.22098 1.36227 1.42615 1.64597 1.77097 2.03193 2.87878 3.18247 3.43524 3.53530 3.73458 4.10846 4.33368 4.38280 4.57003 4.74662 4.97063 5.19676 5.33071 5.49021 5.70411 5.98757 6.23452 6.34229 6.49508 7.42604 7.66462 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.025813 B = 0.011436 C = 0.008289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.482855 B = 2447.879296 C = 3377.286177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.010 3.990 3 Si 1.078 2.922 4 H -0.234 1.234 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.405 4.405 8 H 0.097 0.903 9 C 0.018 3.982 10 C 0.060 3.940 11 N -0.456 5.456 12 S 0.189 5.811 13 C -0.399 4.399 14 C 0.279 3.721 15 C -0.269 4.269 16 C 0.151 3.849 17 N -0.573 5.573 18 C 0.289 3.711 19 N -0.557 5.557 20 H 0.294 0.706 21 H 0.182 0.818 22 H 0.148 0.852 23 H 0.199 0.801 24 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.087 -1.943 -1.173 5.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.212 4.212 3 Si 0.897 3.103 4 H -0.159 1.159 5 H -0.195 1.195 6 H -0.186 1.186 7 C -0.439 4.439 8 H 0.115 0.885 9 C 0.003 3.997 10 C -0.149 4.149 11 N -0.272 5.272 12 S 0.338 5.662 13 C -0.525 4.525 14 C 0.139 3.861 15 C -0.292 4.292 16 C -0.010 4.010 17 N -0.291 5.291 18 C 0.000 4.000 19 N -0.275 5.275 20 H 0.106 0.894 21 H 0.198 0.802 22 H 0.166 0.834 23 H 0.216 0.784 24 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 6.025 -0.496 -0.750 6.092 hybrid contribution -1.331 -1.684 -0.296 2.167 sum 4.694 -2.180 -1.046 5.281 Atomic orbital electron populations 1.70521 1.08381 1.34297 1.26388 1.28552 0.95856 1.06586 0.90217 0.83613 0.74994 0.70993 0.80674 1.15866 1.19502 1.18641 1.21040 0.94462 0.98113 1.30296 0.88480 1.18503 0.95109 0.92031 0.94014 1.23180 0.92117 1.01158 0.98413 1.75778 1.13987 1.14647 1.22738 1.82350 1.15136 1.22694 1.45979 1.22328 0.98921 1.09979 1.21242 1.18973 0.88721 0.89954 0.88469 1.22802 1.01313 0.99045 1.06069 1.23440 0.93796 0.94592 0.89211 1.68405 1.02753 1.30548 1.27387 1.25226 0.99477 0.85249 0.90063 1.68679 1.22932 1.22850 1.13007 0.89402 0.80199 0.83395 0.78419 0.77847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -36.37 13.65 21.85 0.30 -36.07 14 2 C 0.01 0.47 5.45 85.29 0.47 0.94 14 3 Si 1.08 40.63 24.94 68.60 1.71 42.34 14 4 H -0.23 -7.67 6.74 99.48 0.67 -6.99 14 5 H -0.27 -10.65 6.75 99.48 0.67 -9.98 14 6 H -0.26 -9.35 7.11 99.48 0.71 -8.64 14 7 C -0.40 -20.15 8.94 23.33 0.21 -19.94 14 8 H 0.10 5.22 6.26 -2.91 -0.02 5.20 14 9 C 0.02 0.87 5.19 -21.70 -0.11 0.76 14 10 C 0.06 2.63 8.56 85.45 0.73 3.37 14 11 N -0.46 -19.71 11.96 -59.82 -0.72 -20.43 14 12 S 0.19 7.77 22.89 -56.49 -1.29 6.48 14 13 C -0.40 -18.75 6.52 25.19 0.16 -18.59 14 14 C 0.28 12.47 6.78 41.72 0.28 12.75 14 15 C -0.27 -9.79 9.76 22.77 0.22 -9.57 14 16 C 0.15 4.79 11.29 84.59 0.96 5.75 14 17 N -0.57 -20.29 10.43 -200.33 -2.09 -22.38 14 18 C 0.29 11.01 12.28 180.93 2.22 13.23 14 19 N -0.56 -25.21 7.94 -189.45 -1.50 -26.71 14 20 H 0.29 13.69 8.73 -92.71 -0.81 12.88 14 21 H 0.18 7.13 4.54 -2.91 -0.01 7.11 14 22 H 0.15 4.73 7.55 -2.91 -0.02 4.71 14 23 H 0.20 4.31 8.06 -2.91 -0.02 4.29 14 24 H 0.21 6.40 8.06 -2.91 -0.02 6.37 14 Total: -1.00 -55.82 230.37 2.69 -53.14 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 1.14 Total: 14.94 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: 5.14 Total: -11.30 kcal Atomic # 7 Polarization: -101.58 SS G_CDS: -4.01 Total: -105.59 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 1.71 Total: 42.34 kcal Atomic # 16 Polarization: 7.77 SS G_CDS: -1.29 Total: 6.48 kcal Total: -55.82 2.69 -53.14 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260015903.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.357 kcal (2) G-P(sol) polarization free energy of solvation -55.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds