Wall clock time and date at job start Mon Mar 30 2020 03:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30794 * 1 3 3 Si 1.86797 * 120.00364 * 2 1 4 4 H 1.48506 * 109.46875 * 239.99923 * 3 2 1 5 5 H 1.48503 * 109.47035 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47535 * 119.99839 * 3 2 1 7 7 C 1.40022 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00203 * 197.39381 * 7 2 1 9 9 C 1.41064 * 120.00131 * 17.39658 * 7 2 1 10 10 C 1.41312 * 120.96058 * 23.26425 * 9 7 2 11 11 N 1.31642 * 118.87913 * 179.97438 * 10 9 7 12 12 C 1.32977 * 121.00418 * 0.02562 * 11 10 9 13 13 C 1.47861 * 118.92170 * 179.97438 * 12 11 10 14 14 C 1.39488 * 122.10399 * 180.28416 * 13 12 11 15 15 C 1.35017 * 111.68442 * 180.19880 * 14 13 12 16 16 S 1.71765 * 105.44675 * 359.60325 * 15 14 13 17 17 N 1.30611 * 122.10742 * 0.02611 * 13 12 11 18 18 N 1.32979 * 122.15887 * 0.24933 * 12 11 10 19 19 C 1.31646 * 121.00140 * 359.48550 * 18 12 11 20 20 H 0.97006 * 119.99835 * 0.02562 * 1 2 3 21 21 H 1.08005 * 120.56042 * 0.02562 * 10 9 7 22 22 H 1.08004 * 124.16132 * 0.07626 * 14 13 12 23 23 H 1.07998 * 127.27737 * 179.86507 * 15 14 13 24 24 H 1.08000 * 120.56155 * 180.27664 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.0958 1.6962 -1.2126 5 1 1.2771 2.7464 -0.0006 6 1 3.0958 1.6964 1.2125 7 6 2.0080 -1.2127 0.0005 8 1 3.0509 -1.2340 0.2801 9 6 1.3511 -2.4065 -0.3642 10 6 0.1944 -2.3811 -1.1756 11 7 -0.3857 -3.5198 -1.4915 12 6 0.1006 -4.6794 -1.0590 13 6 -0.5880 -5.9308 -1.4413 14 6 -0.1389 -7.1825 -1.0203 15 6 -0.9190 -8.1776 -1.4938 16 16 -2.1439 -7.4005 -2.4135 17 7 -1.6580 -5.9335 -2.1904 18 7 1.1828 -4.7502 -0.2895 19 6 1.8304 -3.6624 0.0716 20 1 -0.4850 0.8401 -0.0004 21 1 -0.2065 -1.4434 -1.5312 22 1 0.7275 -7.3369 -0.3943 23 1 -0.8006 -9.2379 -1.3259 24 1 2.7111 -3.7285 0.6932 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260030333.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:31 Heat of formation + Delta-G solvation = 73.208619 kcal Electronic energy + Delta-G solvation = -13066.514335 eV Core-core repulsion = 10685.207420 eV Total energy + Delta-G solvation = -2381.306915 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.45142 -38.12849 -34.47207 -32.16060 -30.89789 -30.62634 -26.96585 -24.11152 -22.85801 -21.55383 -19.79278 -17.73397 -17.55612 -16.38403 -15.96809 -15.04064 -14.28524 -13.95087 -13.60519 -12.88409 -12.73770 -12.32247 -12.13499 -11.87835 -11.51770 -11.20095 -10.84257 -10.63188 -10.10321 -9.75985 -9.43934 -9.32443 -9.28131 -8.67083 -7.78159 -7.57452 -7.20043 -4.76401 1.27381 2.06639 2.16154 2.56631 2.79098 2.84195 2.88305 2.90679 3.38412 3.61883 4.40771 5.01543 5.50334 5.56102 5.74032 5.86596 6.15134 6.27545 6.41482 6.68829 6.69797 6.78035 7.26849 7.48577 7.62819 7.95868 8.17497 8.26989 8.76396 9.68865 9.71714 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.071423 B = 0.005783 C = 0.005419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.934071 B = 4841.015592 C = 5165.567857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.069 3.931 3 Si 0.924 3.076 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.411 4.411 8 H 0.093 0.907 9 C 0.018 3.982 10 C 0.070 3.930 11 N -0.463 5.463 12 C 0.177 3.823 13 C 0.200 3.800 14 C -0.151 4.151 15 C -0.288 4.288 16 S 0.362 5.638 17 N -0.521 5.521 18 N -0.471 5.471 19 C 0.013 3.987 20 H 0.294 0.706 21 H 0.161 0.839 22 H 0.165 0.835 23 H 0.174 0.826 24 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.248 -5.870 -1.060 5.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.154 4.154 3 Si 0.747 3.253 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.441 4.441 8 H 0.111 0.889 9 C 0.010 3.990 10 C -0.106 4.106 11 N -0.175 5.175 12 C -0.083 4.083 13 C 0.027 3.973 14 C -0.186 4.186 15 C -0.436 4.436 16 S 0.517 5.483 17 N -0.349 5.349 18 N -0.185 5.185 19 C -0.160 4.160 20 H 0.105 0.895 21 H 0.178 0.822 22 H 0.182 0.818 23 H 0.191 0.809 24 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.284 -6.351 -2.598 7.232 hybrid contribution 2.413 1.539 1.560 3.260 sum 0.129 -4.811 -1.038 4.924 Atomic orbital electron populations 1.69725 1.08023 1.31049 1.29993 1.26222 0.94962 1.02430 0.91822 0.86079 0.80056 0.78683 0.80503 1.18247 1.19806 1.18427 1.19668 0.98299 0.90551 1.35603 0.88941 1.19366 0.94171 0.94489 0.90940 1.23368 0.95442 0.94766 0.97027 1.67786 1.30471 0.98432 1.20807 1.18920 0.95194 0.88702 1.05444 1.19048 0.90798 0.92745 0.94672 1.21496 1.03188 0.90115 1.03826 1.26963 1.04174 1.04776 1.07711 1.80262 1.29304 0.93127 1.45600 1.72518 1.18499 1.19698 1.24222 1.67384 1.06685 1.34059 1.10333 1.22756 1.01838 0.87594 1.03790 0.89454 0.82226 0.81783 0.80878 0.84063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.97 10.91 55.55 0.61 -17.37 14 2 C 0.07 1.52 5.19 -17.33 -0.09 1.43 14 3 Si 0.92 16.38 29.59 -169.99 -5.03 11.35 14 4 H -0.26 -4.57 7.11 56.52 0.40 -4.17 14 5 H -0.27 -4.76 7.11 56.52 0.40 -4.36 14 6 H -0.26 -4.53 7.11 56.52 0.40 -4.13 14 7 C -0.41 -9.69 9.09 -37.84 -0.34 -10.03 14 8 H 0.09 2.00 7.90 -52.49 -0.41 1.58 14 9 C 0.02 0.47 5.61 -106.49 -0.60 -0.13 14 10 C 0.07 1.86 9.99 -16.47 -0.16 1.70 14 11 N -0.46 -12.66 10.14 -10.56 -0.11 -12.77 14 12 C 0.18 4.60 7.58 -156.48 -1.19 3.41 14 13 C 0.20 4.56 6.67 -83.98 -0.56 4.00 14 14 C -0.15 -2.80 9.93 -40.26 -0.40 -3.20 14 15 C -0.29 -4.28 11.41 29.59 0.34 -3.94 14 16 S 0.36 5.77 23.20 -107.50 -2.49 3.27 14 17 N -0.52 -11.45 11.11 24.91 0.28 -11.18 14 18 N -0.47 -11.67 9.73 -10.56 -0.10 -11.77 14 19 C 0.01 0.31 11.11 -16.46 -0.18 0.13 14 20 H 0.29 6.19 8.30 -40.82 -0.34 5.86 14 21 H 0.16 4.22 6.17 -52.48 -0.32 3.90 14 22 H 0.16 2.88 7.88 -52.48 -0.41 2.47 14 23 H 0.17 1.87 8.06 -52.49 -0.42 1.45 14 24 H 0.14 2.96 8.06 -52.49 -0.42 2.54 14 LS Contribution 238.95 15.07 3.60 3.60 Total: -1.00 -28.77 238.95 -7.57 -36.34 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -1.13 Total: 5.15 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -3.19 Total: -6.64 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.67 Total: -53.08 kcal Atomic # 14 Polarization: 16.38 SS G_CDS: -5.03 Total: 11.35 kcal Atomic # 16 Polarization: 5.77 SS G_CDS: -2.49 Total: 3.27 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -28.77 -7.57 -36.34 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260030333.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.548 kcal (2) G-P(sol) polarization free energy of solvation -28.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds