Wall clock time and date at job start Mon Mar 30 2020 03:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30794 * 1 3 3 Si 1.86797 * 120.00364 * 2 1 4 4 H 1.48506 * 109.46875 * 239.99923 * 3 2 1 5 5 H 1.48503 * 109.47035 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47535 * 119.99839 * 3 2 1 7 7 C 1.40022 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00203 * 197.39381 * 7 2 1 9 9 C 1.41064 * 120.00131 * 17.39658 * 7 2 1 10 10 C 1.41312 * 120.96058 * 23.26425 * 9 7 2 11 11 N 1.31642 * 118.87913 * 179.97438 * 10 9 7 12 12 C 1.32977 * 121.00418 * 0.02562 * 11 10 9 13 13 C 1.47861 * 118.92170 * 179.97438 * 12 11 10 14 14 C 1.39488 * 122.10399 * 180.28416 * 13 12 11 15 15 C 1.35017 * 111.68442 * 180.19880 * 14 13 12 16 16 S 1.71765 * 105.44675 * 359.60325 * 15 14 13 17 17 N 1.30611 * 122.10742 * 0.02611 * 13 12 11 18 18 N 1.32979 * 122.15887 * 0.24933 * 12 11 10 19 19 C 1.31646 * 121.00140 * 359.48550 * 18 12 11 20 20 H 0.97006 * 119.99835 * 0.02562 * 1 2 3 21 21 H 1.08005 * 120.56042 * 0.02562 * 10 9 7 22 22 H 1.08004 * 124.16132 * 0.07626 * 14 13 12 23 23 H 1.07998 * 127.27737 * 179.86507 * 15 14 13 24 24 H 1.08000 * 120.56155 * 180.27664 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.0958 1.6962 -1.2126 5 1 1.2771 2.7464 -0.0006 6 1 3.0958 1.6964 1.2125 7 6 2.0080 -1.2127 0.0005 8 1 3.0509 -1.2340 0.2801 9 6 1.3511 -2.4065 -0.3642 10 6 0.1944 -2.3811 -1.1756 11 7 -0.3857 -3.5198 -1.4915 12 6 0.1006 -4.6794 -1.0590 13 6 -0.5880 -5.9308 -1.4413 14 6 -0.1389 -7.1825 -1.0203 15 6 -0.9190 -8.1776 -1.4938 16 16 -2.1439 -7.4005 -2.4135 17 7 -1.6580 -5.9335 -2.1904 18 7 1.1828 -4.7502 -0.2895 19 6 1.8304 -3.6624 0.0716 20 1 -0.4850 0.8401 -0.0004 21 1 -0.2065 -1.4434 -1.5312 22 1 0.7275 -7.3369 -0.3943 23 1 -0.8006 -9.2379 -1.3259 24 1 2.7111 -3.7285 0.6932 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260030333.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:31 Heat of formation + Delta-G solvation = 54.459611 kcal Electronic energy + Delta-G solvation = -13067.327353 eV Core-core repulsion = 10685.207420 eV Total energy + Delta-G solvation = -2382.119933 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.19830 -39.73580 -36.25292 -34.05490 -32.59767 -32.19407 -28.72174 -25.76683 -24.74241 -23.23494 -21.33550 -19.53274 -18.95594 -18.04527 -17.72743 -16.78892 -15.90399 -15.47066 -15.23590 -14.65240 -14.09875 -13.96910 -13.91807 -13.60505 -13.18000 -12.84070 -12.23998 -11.95667 -11.65104 -11.39485 -11.28758 -11.21756 -10.68148 -10.34949 -9.65603 -9.21747 -8.92379 -6.59728 -0.19913 0.51224 0.79500 0.86418 1.12481 1.38837 1.44328 1.56121 1.78262 2.12511 2.66417 3.50080 3.64602 3.91210 4.12308 4.39391 4.58846 4.69407 4.85323 4.93176 4.97099 5.06985 5.51944 5.68376 5.92403 6.15063 6.28042 6.45719 6.86388 7.80406 8.00415 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.071423 B = 0.005783 C = 0.005419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.934071 B = 4841.015592 C = 5165.567857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.029 3.971 3 Si 1.004 2.996 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.248 1.248 7 C -0.422 4.422 8 H 0.112 0.888 9 C -0.006 4.006 10 C 0.040 3.960 11 N -0.489 5.489 12 C 0.151 3.849 13 C 0.164 3.836 14 C -0.176 4.176 15 C -0.252 4.252 16 S 0.444 5.556 17 N -0.582 5.582 18 N -0.471 5.471 19 C 0.006 3.994 20 H 0.303 0.697 21 H 0.150 0.850 22 H 0.168 0.832 23 H 0.225 0.775 24 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.872 -6.738 -0.784 6.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.191 4.191 3 Si 0.822 3.178 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.172 1.172 7 C -0.451 4.451 8 H 0.130 0.870 9 C -0.014 4.014 10 C -0.135 4.135 11 N -0.202 5.202 12 C -0.109 4.109 13 C -0.007 4.007 14 C -0.210 4.210 15 C -0.401 4.401 16 S 0.598 5.402 17 N -0.413 5.413 18 N -0.184 5.184 19 C -0.168 4.168 20 H 0.115 0.885 21 H 0.167 0.833 22 H 0.186 0.814 23 H 0.242 0.758 24 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.659 -7.226 -2.313 7.766 hybrid contribution 2.086 1.695 1.431 3.045 sum 0.427 -5.531 -0.882 5.617 Atomic orbital electron populations 1.69783 1.09868 1.32672 1.29579 1.27256 0.95547 1.05858 0.90438 0.84899 0.78535 0.73553 0.80809 1.17922 1.19190 1.17181 1.20106 0.99159 0.90743 1.35083 0.87037 1.19645 0.94284 0.95915 0.91582 1.23299 0.96951 0.94484 0.98746 1.67751 1.31410 0.99251 1.21765 1.19626 0.95877 0.89620 1.05790 1.19188 0.91851 0.93006 0.96663 1.21463 1.04616 0.89421 1.05543 1.27475 1.01669 1.06432 1.04525 1.79802 1.27406 0.89688 1.43277 1.72103 1.19048 1.25069 1.25038 1.67466 1.06595 1.34029 1.10340 1.23280 1.02512 0.87265 1.03725 0.88503 0.83320 0.81443 0.75835 0.81189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.06 10.91 21.84 0.24 -37.83 14 2 C 0.03 1.30 5.19 85.28 0.44 1.74 14 3 Si 1.00 32.51 29.59 68.60 2.03 34.54 14 4 H -0.26 -8.12 7.11 99.48 0.71 -7.42 14 5 H -0.27 -8.35 7.11 99.48 0.71 -7.64 14 6 H -0.25 -7.57 7.11 99.48 0.71 -6.86 14 7 C -0.42 -19.94 9.09 23.40 0.21 -19.73 14 8 H 0.11 4.69 7.90 -2.91 -0.02 4.67 14 9 C -0.01 -0.33 5.61 -21.07 -0.12 -0.45 14 10 C 0.04 2.24 9.99 85.48 0.85 3.09 14 11 N -0.49 -28.18 10.14 -187.32 -1.90 -30.08 14 12 C 0.15 8.10 7.58 137.17 1.04 9.14 14 13 C 0.16 7.61 6.67 42.18 0.28 7.89 14 14 C -0.18 -6.35 9.93 21.83 0.22 -6.13 14 15 C -0.25 -6.59 11.41 67.08 0.77 -5.82 14 16 S 0.44 13.02 23.20 -56.49 -1.31 11.71 14 17 N -0.58 -25.69 11.11 -75.12 -0.83 -26.52 14 18 N -0.47 -23.94 9.73 -187.32 -1.82 -25.76 14 19 C 0.01 0.28 11.11 85.48 0.95 1.23 14 20 H 0.30 12.91 8.30 -92.70 -0.77 12.14 14 21 H 0.15 8.39 6.17 -2.91 -0.02 8.37 14 22 H 0.17 5.76 7.88 -2.91 -0.02 5.74 14 23 H 0.22 3.48 8.06 -2.91 -0.02 3.45 14 24 H 0.17 7.07 8.06 -2.91 -0.02 7.05 14 Total: -1.00 -65.78 238.95 2.28 -63.49 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 1.24 Total: 19.49 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 4.64 Total: -9.04 kcal Atomic # 7 Polarization: -115.87 SS G_CDS: -4.32 Total: -120.19 kcal Atomic # 14 Polarization: 32.51 SS G_CDS: 2.03 Total: 34.54 kcal Atomic # 16 Polarization: 13.02 SS G_CDS: -1.31 Total: 11.71 kcal Total: -65.78 2.28 -63.49 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260030333.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.952 kcal (2) G-P(sol) polarization free energy of solvation -65.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds