Wall clock time and date at job start Mon Mar 30 2020 03:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30770 * 1 3 3 Si 1.86798 * 120.00409 * 2 1 4 4 H 1.48501 * 109.47110 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46877 * 299.99397 * 3 2 1 6 6 H 1.48493 * 109.47101 * 59.99256 * 3 2 1 7 7 C 1.39958 * 119.99496 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99759 * 179.97438 * 7 2 1 9 9 C 1.41776 * 120.00429 * 0.02562 * 7 2 1 10 10 N 1.32354 * 127.42934 * 359.97438 * 9 7 2 11 11 O 1.20734 * 111.52716 * 180.02562 * 10 9 7 12 12 C 1.34164 * 113.15412 * 359.97438 * 11 10 9 13 13 O 1.35505 * 126.51287 * 180.02562 * 12 11 10 14 14 C 1.36014 * 106.97318 * 0.02562 * 12 11 10 15 15 Br 1.89095 * 128.39744 * 179.97438 * 14 12 11 16 16 H 0.96998 * 119.99201 * 0.02562 * 1 2 3 17 17 H 0.96703 * 113.99901 * 359.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 3.7018 1.3462 0.0006 5 1 1.8832 2.3963 -1.2126 6 1 1.8830 2.3964 1.2123 7 6 2.0074 -1.2121 0.0005 8 1 3.0874 -1.2122 0.0001 9 6 1.2985 -2.4399 0.0005 10 7 -0.0139 -2.6111 0.0005 11 8 -0.3080 -3.7820 0.0010 12 6 0.7599 -4.5942 0.0009 13 8 0.7424 -5.9491 0.0009 14 6 1.8634 -3.7990 0.0008 15 35 3.6826 -4.3148 0.0013 16 1 -0.4849 0.8401 -0.0004 17 1 -0.1461 -6.3310 0.0014 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260057419.mol2 17 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:41 Heat of formation + Delta-G solvation = -19.480724 kcal Electronic energy + Delta-G solvation = -9483.578405 eV Core-core repulsion = 7270.512927 eV Total energy + Delta-G solvation = -2213.065478 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 232.947 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -44.66602 -38.78536 -36.02247 -33.77115 -31.77863 -30.12422 -28.34467 -23.48142 -22.54794 -20.60478 -18.08293 -17.98327 -16.78403 -16.33878 -15.87396 -14.75405 -14.40473 -13.90034 -13.07452 -13.04793 -12.88761 -12.27063 -11.91174 -11.50206 -11.43790 -10.67542 -10.18251 -9.24797 -8.59330 -6.67344 0.88043 1.02549 1.31232 1.42097 1.59484 1.95662 2.18107 2.24330 3.25197 3.45662 4.16272 4.73459 5.04005 5.29914 6.24639 6.38028 6.51926 6.81466 8.36263 8.47063 Molecular weight = 232.95amu Principal moments of inertia in cm(-1) A = 0.035849 B = 0.012814 C = 0.009471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.867586 B = 2184.604269 C = 2955.630870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.023 3.977 3 Si 0.997 3.003 4 H -0.250 1.250 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.459 4.459 8 H 0.098 0.902 9 C 0.183 3.817 10 N -0.442 5.442 11 O 0.012 5.988 12 C 0.188 3.812 13 O -0.411 6.411 14 C -0.315 4.315 15 Br 0.001 6.999 16 H 0.285 0.715 17 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.672 -6.275 0.001 7.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.195 4.195 3 Si 0.816 3.184 4 H -0.173 1.173 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.497 4.497 8 H 0.116 0.884 9 C 0.037 3.963 10 N -0.185 5.185 11 O -0.031 6.031 12 C 0.077 3.923 13 O -0.216 6.216 14 C -0.400 4.400 15 Br 0.083 6.917 16 H 0.096 0.904 17 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 4.664 -5.788 0.001 7.434 hybrid contribution -0.170 0.065 0.000 0.182 sum 4.495 -5.723 0.001 7.277 Atomic orbital electron populations 1.69975 1.09078 1.30235 1.34138 1.26951 0.95753 1.04890 0.91886 0.84930 0.79407 0.75216 0.78834 1.17308 1.19004 1.19013 1.19177 0.94841 0.88112 1.47544 0.88430 1.21459 0.87830 0.92304 0.94702 1.74875 1.15082 0.89702 1.38807 1.84740 1.32100 1.13101 1.73136 1.21758 0.88656 0.84075 0.97811 1.85175 1.36858 1.09011 1.90593 1.22562 0.91118 0.94320 1.31953 1.96267 1.06384 1.90518 1.98529 0.90428 0.71428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.03 12.04 21.82 0.26 -44.77 13 2 C 0.02 1.19 5.49 85.27 0.47 1.66 13 3 Si 1.00 39.00 29.56 68.60 2.03 41.03 13 4 H -0.25 -9.32 7.11 99.48 0.71 -8.61 13 5 H -0.27 -9.95 7.11 99.48 0.71 -9.25 13 6 H -0.27 -9.96 7.11 99.48 0.71 -9.25 13 7 C -0.46 -25.36 9.48 23.56 0.22 -25.14 13 8 H 0.10 5.09 7.85 -2.91 -0.02 5.06 13 9 C 0.18 10.32 7.00 42.29 0.30 10.61 13 10 N -0.44 -25.40 10.48 -48.66 -0.51 -25.91 13 11 O 0.01 0.59 11.09 92.77 1.03 1.62 13 12 C 0.19 8.16 8.68 67.30 0.58 8.74 13 13 O -0.41 -12.92 13.64 -65.98 -0.90 -13.82 13 14 C -0.32 -15.28 7.08 24.10 0.17 -15.11 13 15 Br 0.00 0.02 34.13 -20.37 -0.70 -0.67 13 16 H 0.29 14.35 8.29 -92.71 -0.77 13.58 13 17 H 0.43 7.78 9.06 -74.06 -0.67 7.11 13 Total: -1.00 -66.71 195.20 3.62 -63.09 By element: Atomic # 1 Polarization: -2.01 SS G_CDS: 0.66 Total: -1.35 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 1.74 Total: -19.23 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -0.25 Total: -70.67 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.13 Total: -12.19 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -0.70 Total: -0.67 kcal Total: -66.71 3.62 -63.09 kcal The number of atoms in the molecule is 17 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260057419.mol2 17 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.613 kcal (2) G-P(sol) polarization free energy of solvation -66.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds