Wall clock time and date at job start Mon Mar 30 2020 03:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.40263 * 110.99539 * 2 1 4 4 C 1.39003 * 119.77824 * 232.75463 * 3 2 1 5 5 C 1.38170 * 119.57724 * 180.23318 * 4 3 2 6 6 C 1.38304 * 120.17768 * 0.04210 * 5 4 3 7 7 C 1.38380 * 120.18643 * 359.85030 * 6 5 4 8 8 C 1.37995 * 120.17237 * 52.80488 * 3 2 1 9 9 C 1.51459 * 119.77653 * 359.30400 * 8 3 2 10 10 N 1.47000 * 108.36784 * 69.35616 * 9 8 3 11 11 C 1.45622 * 112.38696 * 275.96667 * 10 9 8 12 12 C 1.46965 * 110.99870 * 122.61805 * 2 1 3 13 13 H 1.09003 * 109.17098 * 203.28613 * 12 2 1 14 14 C 1.50702 * 109.17298 * 84.01844 * 12 2 1 15 15 H 1.08003 * 119.99447 * 271.95529 * 14 12 2 16 16 C 1.37869 * 120.00068 * 91.95589 * 14 12 2 17 17 N 1.31520 * 120.00217 * 351.64950 * 16 14 12 18 18 Si 1.86798 * 120.00335 * 171.65149 * 16 14 12 19 19 H 1.48504 * 109.46854 * 59.99615 * 18 16 14 20 20 H 1.48503 * 109.46879 * 300.00408 * 18 16 14 21 21 H 1.48494 * 109.47512 * 179.97438 * 18 16 14 22 22 H 1.08996 * 109.47091 * 269.62856 * 1 2 3 23 23 H 1.09003 * 109.47120 * 29.63197 * 1 2 3 24 24 H 1.09002 * 109.47001 * 149.62858 * 1 2 3 25 25 H 1.08000 * 120.21774 * 0.25717 * 4 3 2 26 26 H 1.07998 * 119.91153 * 180.02562 * 5 4 3 27 27 H 1.07998 * 119.90891 * 179.88193 * 6 5 4 28 28 H 1.08001 * 120.15788 * 179.97438 * 7 6 5 29 29 H 1.09003 * 109.68196 * 189.07119 * 9 8 3 30 30 H 1.09002 * 109.68497 * 309.63522 * 9 8 3 31 31 H 1.00902 * 110.99816 * 150.99693 * 10 9 8 32 32 H 1.08994 * 108.57671 * 306.66100 * 11 10 9 33 33 H 1.08991 * 108.55651 * 189.02114 * 11 10 9 34 34 H 0.97001 * 119.99894 * 4.26775 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9716 1.3095 0.0000 4 6 2.9006 1.6924 -0.9604 5 6 3.3966 2.9820 -0.9536 6 6 2.9715 3.8853 0.0036 7 6 2.0449 3.5035 0.9578 8 6 1.5468 2.2154 0.9503 9 6 0.5233 1.7959 1.9849 10 7 1.1560 0.8340 2.8989 11 6 1.1266 -0.5262 2.3797 12 6 1.9957 -0.7396 1.1557 13 1 3.0069 -0.3942 1.3711 14 6 2.0346 -2.2097 0.8265 15 1 1.1687 -2.8278 1.0127 16 6 3.1754 -2.7656 0.2877 17 7 4.1684 -1.9911 -0.0915 18 14 3.3109 -4.6188 0.0963 19 1 2.2221 -5.1059 -0.7884 20 1 3.1920 -5.2640 1.4286 21 1 4.6256 -4.9597 -0.5039 22 1 -0.3633 -0.0067 1.0276 23 1 -0.3633 0.8933 -0.5081 24 1 -0.3633 -0.8867 -0.5196 25 1 3.2325 0.9866 -1.7075 26 1 4.1183 3.2854 -1.6975 27 1 3.3634 4.8916 0.0060 28 1 1.7136 4.2091 1.7052 29 1 0.1884 2.6690 2.5451 30 1 -0.3278 1.3275 1.4906 31 1 0.7395 0.8796 3.8168 32 1 0.0976 -0.7776 2.1227 33 1 1.4604 -1.2045 3.1648 34 1 4.1243 -1.0347 0.0643 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260075929.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:26 Heat of formation + Delta-G solvation = 69.016834 kcal Electronic energy + Delta-G solvation = -16910.814916 eV Core-core repulsion = 14423.665461 eV Total energy + Delta-G solvation = -2487.149455 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.14941 -36.92709 -34.25654 -32.79509 -30.99162 -29.66613 -27.81861 -25.49892 -24.70158 -23.32067 -21.74194 -20.22466 -19.37931 -16.94329 -16.37459 -15.73117 -15.12994 -14.69980 -14.46178 -14.29473 -13.70739 -13.18281 -13.02882 -12.53314 -12.23130 -12.04517 -11.66916 -11.36560 -10.86621 -10.83557 -10.78848 -10.60900 -10.44530 -10.11409 -9.68235 -8.80275 -8.44851 -8.28554 -8.00298 -7.83762 -7.12635 -6.36248 -4.07512 1.89184 1.97553 3.44964 3.46147 3.65257 4.24349 4.51413 4.82158 4.90357 5.17338 5.34281 5.50889 5.55536 5.58921 5.70767 5.87243 5.91050 5.95801 6.13383 6.19555 6.24940 6.37283 6.60741 6.62602 6.78052 6.91505 7.00732 7.05155 7.26993 7.44979 7.52398 7.81039 8.04315 8.17593 8.45620 8.59075 8.89213 9.69015 11.04754 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.030085 B = 0.009780 C = 0.008250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.468249 B = 2862.180621 C = 3393.012979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.490 5.490 3 C 0.115 3.885 4 C -0.100 4.100 5 C -0.121 4.121 6 C -0.143 4.143 7 C -0.109 4.109 8 C -0.112 4.112 9 C 0.077 3.923 10 N -0.694 5.694 11 C 0.038 3.962 12 C 0.202 3.798 13 H 0.053 0.947 14 C -0.582 4.582 15 H 0.047 0.953 16 C 0.033 3.967 17 N -0.893 5.893 18 Si 1.069 2.931 19 H -0.288 1.288 20 H -0.288 1.288 21 H -0.283 1.283 22 H 0.048 0.952 23 H 0.042 0.958 24 H 0.063 0.937 25 H 0.127 0.873 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.334 0.666 32 H 0.027 0.973 33 H 0.071 0.929 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.765 8.175 2.185 10.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.211 5.211 3 C 0.020 3.980 4 C -0.119 4.119 5 C -0.140 4.140 6 C -0.161 4.161 7 C -0.128 4.128 8 C -0.115 4.115 9 C -0.051 4.051 10 N -0.325 5.325 11 C -0.092 4.092 12 C 0.099 3.901 13 H 0.071 0.929 14 C -0.622 4.622 15 H 0.066 0.934 16 C -0.175 4.175 17 N -0.528 5.528 18 Si 0.897 3.103 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.208 1.208 22 H 0.066 0.934 23 H 0.060 0.940 24 H 0.081 0.919 25 H 0.145 0.855 26 H 0.134 0.866 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.152 0.848 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.010 6.800 0.949 7.951 hybrid contribution -2.183 1.481 1.416 2.994 sum -6.192 8.281 2.366 10.607 Atomic orbital electron populations 1.22800 0.89661 1.00561 1.00290 1.61658 1.06046 1.07720 1.45706 1.19231 0.95302 0.90694 0.92780 1.21177 0.96732 0.95443 0.98517 1.21020 1.00152 0.93772 0.99048 1.20944 0.99329 0.99186 0.96675 1.20809 0.97975 0.95419 0.98627 1.20451 1.00000 0.94596 0.96492 1.21484 0.94441 0.95684 0.93493 1.59510 1.60801 1.07475 1.04685 1.22265 0.99598 0.87000 1.00314 1.19376 0.94333 0.94000 0.82429 0.92872 1.21645 1.01594 0.91237 1.47716 0.93432 1.25803 0.92734 1.06534 0.92434 1.70720 1.34410 1.07576 1.40061 0.83561 0.76154 0.74236 0.76352 1.21502 1.21483 1.20795 0.93392 0.93955 0.91884 0.85542 0.86649 0.86988 0.87092 0.91499 0.91772 0.84831 0.95567 0.91042 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 7.85 60.07 0.47 0.75 16 2 N -0.49 -11.47 4.66 -173.49 -0.81 -12.28 16 3 C 0.11 2.48 4.27 -83.80 -0.36 2.13 16 4 C -0.10 -2.06 9.99 -39.32 -0.39 -2.45 16 5 C -0.12 -2.10 10.04 -39.58 -0.40 -2.49 16 6 C -0.14 -2.29 10.04 -39.50 -0.40 -2.69 16 7 C -0.11 -1.83 9.69 -39.58 -0.38 -2.21 16 8 C -0.11 -2.15 5.21 -104.39 -0.54 -2.69 16 9 C 0.08 1.32 6.02 -4.55 -0.03 1.29 16 10 N -0.69 -12.72 6.55 -116.30 -0.76 -13.48 16 11 C 0.04 0.80 5.12 -5.21 -0.03 0.78 16 12 C 0.20 5.06 1.74 -69.52 -0.12 4.94 16 13 H 0.05 1.53 6.27 -51.93 -0.33 1.20 16 14 C -0.58 -15.99 8.39 -34.44 -0.29 -16.27 16 15 H 0.05 1.29 7.83 -52.48 -0.41 0.88 16 16 C 0.03 0.93 5.44 -17.82 -0.10 0.83 16 17 N -0.89 -26.78 13.62 55.43 0.75 -26.03 16 18 Si 1.07 24.88 29.91 -169.99 -5.08 19.79 16 19 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H 0.05 0.93 2.64 -51.93 -0.14 0.79 16 23 H 0.04 0.78 7.57 -51.93 -0.39 0.39 16 24 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.13 2.74 8.06 -52.49 -0.42 2.32 16 26 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 27 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.11 1.57 7.98 -52.49 -0.42 1.15 16 29 H 0.07 0.95 7.93 -51.93 -0.41 0.54 16 30 H 0.06 1.10 4.25 -51.93 -0.22 0.87 16 31 H 0.33 5.07 8.89 -39.29 -0.35 4.72 16 32 H 0.03 0.54 5.56 -51.93 -0.29 0.25 16 33 H 0.07 1.53 8.08 -51.93 -0.42 1.11 16 34 H 0.28 8.39 6.68 -40.82 -0.27 8.12 16 LS Contribution 265.84 15.07 4.01 4.01 Total: -1.00 -30.28 265.84 -8.59 -38.87 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -4.14 Total: 7.22 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -2.56 Total: -18.10 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.82 Total: -51.78 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.08 Total: 19.79 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.28 -8.59 -38.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260075929.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.886 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds