Wall clock time and date at job start Mon Mar 30 2020 03:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.40257 * 111.00170 * 2 1 4 4 C 1.39004 * 119.78464 * 127.24374 * 3 2 1 5 5 C 1.38166 * 119.57780 * 179.76703 * 4 3 2 6 6 C 1.38304 * 120.18047 * 359.96137 * 5 4 3 7 7 C 1.38375 * 120.18557 * 0.13817 * 6 5 4 8 8 C 1.38001 * 120.16880 * 307.19251 * 3 2 1 9 9 C 1.51450 * 119.77883 * 0.69240 * 8 3 2 10 10 N 1.47001 * 108.37217 * 290.65121 * 9 8 3 11 11 C 1.45626 * 112.34609 * 84.04768 * 10 9 8 12 12 C 1.46973 * 110.99792 * 237.37913 * 2 1 3 13 13 H 1.09004 * 109.16994 * 156.72780 * 12 2 1 14 14 C 1.50699 * 109.16901 * 275.98243 * 12 2 1 15 15 H 1.08006 * 119.99670 * 95.99259 * 14 12 2 16 16 C 1.37875 * 120.00668 * 275.98859 * 14 12 2 17 17 N 1.31514 * 119.99645 * 355.16486 * 16 14 12 18 18 Si 1.86799 * 120.00517 * 175.16866 * 16 14 12 19 19 H 1.48502 * 109.46762 * 59.99720 * 18 16 14 20 20 H 1.48495 * 109.46713 * 300.00026 * 18 16 14 21 21 H 1.48492 * 109.47436 * 179.97438 * 18 16 14 22 22 H 1.08993 * 109.47157 * 210.33674 * 1 2 3 23 23 H 1.08998 * 109.46928 * 330.33979 * 1 2 3 24 24 H 1.09000 * 109.46900 * 90.33179 * 1 2 3 25 25 H 1.07995 * 120.21032 * 359.78581 * 4 3 2 26 26 H 1.08004 * 119.90437 * 179.97438 * 5 4 3 27 27 H 1.07998 * 119.90427 * 180.16482 * 6 5 4 28 28 H 1.08003 * 120.16072 * 180.02562 * 7 6 5 29 29 H 1.09004 * 109.68370 * 50.36606 * 9 8 3 30 30 H 1.09000 * 109.68238 * 170.92494 * 9 8 3 31 31 H 1.00898 * 110.99942 * 209.00514 * 10 9 8 32 32 H 1.08997 * 108.51389 * 170.93368 * 11 10 9 33 33 H 1.08995 * 108.62538 * 53.30140 * 11 10 9 34 34 H 0.97003 * 120.00218 * 5.16346 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9717 1.3094 0.0000 4 6 2.9008 1.6923 0.9604 5 6 3.3968 2.9819 0.9535 6 6 2.9717 3.8852 -0.0037 7 6 2.0452 3.5033 -0.9579 8 6 1.5469 2.2153 -0.9504 9 6 0.5236 1.7959 -1.9851 10 7 1.1561 0.8337 -2.8989 11 6 1.1257 -0.5262 -2.3789 12 6 1.9957 -0.7397 -1.1557 13 1 3.0070 -0.3945 -1.3710 14 6 2.0345 -2.2097 -0.8264 15 1 1.2208 -2.8525 -1.1286 16 6 3.1086 -2.7343 -0.1394 17 7 4.1424 -1.9729 0.1452 18 14 3.0957 -4.5266 0.3870 19 1 2.9789 -5.3939 -0.8128 20 1 1.9405 -4.7695 1.2878 21 1 4.3577 -4.8412 1.1036 22 1 -0.3633 -0.8869 0.5190 23 1 -0.3633 0.8930 0.5085 24 1 -0.3633 -0.0060 -1.0277 25 1 3.2330 0.9863 1.7070 26 1 4.1186 3.2852 1.6975 27 1 3.3643 4.8913 -0.0066 28 1 1.7139 4.2089 -1.7055 29 1 -0.3276 1.3276 -1.4907 30 1 0.1888 2.6689 -2.5452 31 1 0.7398 0.8794 -3.8168 32 1 1.4587 -1.2046 -3.1643 33 1 0.0969 -0.7773 -2.1211 34 1 4.1184 -1.0253 -0.0611 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260075939.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:28 Heat of formation + Delta-G solvation = 69.152846 kcal Electronic energy + Delta-G solvation = -16928.333380 eV Core-core repulsion = 14441.189823 eV Total energy + Delta-G solvation = -2487.143557 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.15313 -36.93003 -34.26630 -32.76842 -30.99344 -29.66604 -27.82352 -25.49608 -24.70498 -23.31997 -21.73623 -20.22658 -19.38207 -16.96234 -16.35827 -15.71385 -15.12986 -14.69646 -14.46640 -14.31444 -13.70125 -13.18249 -13.03633 -12.53846 -12.18918 -12.01143 -11.67306 -11.35119 -10.87523 -10.86678 -10.78834 -10.60363 -10.44580 -10.10699 -9.68957 -8.85668 -8.37016 -8.27718 -8.02007 -7.85047 -7.12842 -6.33000 -4.07489 1.89216 1.97638 3.44982 3.48023 3.65951 4.24374 4.52141 4.82708 4.89976 5.17283 5.34239 5.51592 5.55544 5.60584 5.70324 5.86819 5.90711 5.95876 6.13342 6.18685 6.24963 6.37384 6.61116 6.62704 6.76807 6.91604 7.01218 7.06508 7.27148 7.44720 7.53079 7.80535 8.03949 8.14838 8.47513 8.59126 8.90111 9.70620 11.06334 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.029745 B = 0.009960 C = 0.008339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.102969 B = 2810.681718 C = 3356.815393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.490 5.490 3 C 0.116 3.884 4 C -0.099 4.099 5 C -0.121 4.121 6 C -0.143 4.143 7 C -0.109 4.109 8 C -0.112 4.112 9 C 0.077 3.923 10 N -0.694 5.694 11 C 0.039 3.961 12 C 0.202 3.798 13 H 0.052 0.948 14 C -0.584 4.584 15 H 0.047 0.953 16 C 0.037 3.963 17 N -0.894 5.894 18 Si 1.068 2.932 19 H -0.289 1.289 20 H -0.288 1.288 21 H -0.283 1.283 22 H 0.063 0.937 23 H 0.042 0.958 24 H 0.048 0.952 25 H 0.127 0.873 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.334 0.666 32 H 0.071 0.929 33 H 0.027 0.973 34 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.908 8.246 -1.915 10.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.212 5.212 3 C 0.021 3.979 4 C -0.119 4.119 5 C -0.140 4.140 6 C -0.161 4.161 7 C -0.128 4.128 8 C -0.115 4.115 9 C -0.051 4.051 10 N -0.324 5.324 11 C -0.091 4.091 12 C 0.099 3.901 13 H 0.070 0.930 14 C -0.624 4.624 15 H 0.065 0.935 16 C -0.171 4.171 17 N -0.529 5.529 18 Si 0.896 3.104 19 H -0.216 1.216 20 H -0.214 1.214 21 H -0.208 1.208 22 H 0.082 0.918 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.145 0.855 26 H 0.134 0.866 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.152 0.848 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.216 6.898 -0.537 8.103 hybrid contribution -2.128 1.447 -1.562 3.010 sum -6.344 8.345 -2.099 10.691 Atomic orbital electron populations 1.22793 0.89605 1.00577 1.00287 1.61589 1.06088 1.07754 1.45767 1.19214 0.95280 0.90660 0.92774 1.21179 0.96707 0.95447 0.98520 1.21020 1.00149 0.93769 0.99051 1.20943 0.99322 0.99187 0.96670 1.20807 0.97984 0.95415 0.98627 1.20449 1.00002 0.94602 0.96486 1.21485 0.94453 0.95682 0.93496 1.59511 1.60814 1.07421 1.04685 1.22217 0.99592 0.87068 1.00239 1.19330 0.94269 0.94150 0.82314 0.93048 1.21684 1.08627 0.91149 1.40925 0.93503 1.25749 0.91977 1.06110 0.93313 1.70713 1.29471 1.08293 1.44404 0.83575 0.76046 0.74295 0.76440 1.21604 1.21435 1.20807 0.91836 0.93957 0.93406 0.85526 0.86647 0.86988 0.87093 0.91752 0.91492 0.84812 0.91101 0.95488 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 7.85 60.07 0.47 0.76 16 2 N -0.49 -11.48 4.66 -173.50 -0.81 -12.28 16 3 C 0.12 2.50 4.27 -83.80 -0.36 2.14 16 4 C -0.10 -2.06 9.99 -39.32 -0.39 -2.45 16 5 C -0.12 -2.10 10.04 -39.58 -0.40 -2.49 16 6 C -0.14 -2.29 10.04 -39.51 -0.40 -2.69 16 7 C -0.11 -1.83 9.69 -39.58 -0.38 -2.21 16 8 C -0.11 -2.14 5.21 -104.39 -0.54 -2.69 16 9 C 0.08 1.31 6.02 -4.55 -0.03 1.29 16 10 N -0.69 -12.70 6.55 -116.31 -0.76 -13.46 16 11 C 0.04 0.82 5.11 -5.21 -0.03 0.79 16 12 C 0.20 5.08 1.72 -69.53 -0.12 4.96 16 13 H 0.05 1.48 6.28 -51.93 -0.33 1.16 16 14 C -0.58 -16.05 8.40 -34.44 -0.29 -16.34 16 15 H 0.05 1.27 7.81 -52.48 -0.41 0.86 16 16 C 0.04 1.03 5.45 -17.82 -0.10 0.93 16 17 N -0.89 -26.82 13.62 55.43 0.76 -26.06 16 18 Si 1.07 24.98 29.91 -169.99 -5.08 19.90 16 19 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 23 H 0.04 0.78 7.57 -51.93 -0.39 0.38 16 24 H 0.05 0.92 2.64 -51.93 -0.14 0.78 16 25 H 0.13 2.75 8.06 -52.49 -0.42 2.33 16 26 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 27 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.11 1.57 7.98 -52.48 -0.42 1.15 16 29 H 0.06 1.10 4.25 -51.93 -0.22 0.88 16 30 H 0.07 0.95 7.93 -51.93 -0.41 0.54 16 31 H 0.33 5.06 8.89 -39.29 -0.35 4.72 16 32 H 0.07 1.52 8.08 -51.93 -0.42 1.10 16 33 H 0.03 0.56 5.56 -51.93 -0.29 0.27 16 34 H 0.28 8.38 6.65 -40.82 -0.27 8.11 16 LS Contribution 265.80 15.07 4.01 4.01 Total: -1.00 -30.28 265.80 -8.59 -38.87 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -4.13 Total: 7.03 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -2.56 Total: -18.01 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.82 Total: -51.80 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.28 -8.59 -38.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260075939.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.022 kcal (2) G-P(sol) polarization free energy of solvation -30.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds