Wall clock time and date at job start Mon Mar 30 2020 03:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47145 * 110.99821 * 2 1 4 4 C 1.52990 * 108.58866 * 165.29755 * 3 2 1 5 5 C 1.50424 * 109.82918 * 50.14070 * 4 3 2 6 6 C 1.38837 * 119.44286 * 163.49362 * 5 4 3 7 7 C 1.50698 * 120.42694 * 359.63477 * 6 5 4 8 8 C 1.50701 * 109.47385 * 85.04230 * 7 6 5 9 9 H 1.07992 * 119.99900 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00021 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99994 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00176 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47313 * 59.99954 * 12 10 8 14 14 H 1.48505 * 109.47550 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47227 * 300.00128 * 12 10 8 16 16 C 1.38158 * 119.13925 * 179.67197 * 6 5 4 17 17 N 1.31881 * 120.64355 * 359.96354 * 16 6 5 18 18 C 1.31764 * 121.74937 * 0.09691 * 17 16 6 19 19 C 1.38021 * 121.90406 * 343.24615 * 5 4 3 20 20 C 1.46703 * 110.99595 * 236.82348 * 2 1 3 21 21 H 1.08992 * 109.47459 * 179.22266 * 1 2 3 22 22 H 1.09004 * 109.47040 * 299.22417 * 1 2 3 23 23 H 1.09000 * 109.47033 * 59.22369 * 1 2 3 24 24 H 1.09005 * 109.61811 * 285.02408 * 3 2 1 25 25 H 1.08998 * 109.62044 * 45.56209 * 3 2 1 26 26 H 1.09006 * 109.40895 * 290.03297 * 4 3 2 27 27 H 1.08994 * 109.35226 * 170.21748 * 4 3 2 28 28 H 1.09003 * 109.46354 * 205.04139 * 7 6 5 29 29 H 1.08995 * 109.47193 * 325.03446 * 7 6 5 30 30 H 0.96998 * 120.00048 * 179.97438 * 11 10 8 31 31 H 1.08003 * 119.67848 * 179.97438 * 16 6 5 32 32 H 1.07995 * 119.57868 * 179.97438 * 18 17 16 33 33 H 1.09004 * 109.32015 * 296.29353 * 20 2 1 34 34 H 1.08996 * 109.32055 * 55.92496 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9963 1.3737 0.0000 4 6 3.4806 1.3264 0.3680 5 6 4.1860 0.3091 -0.4865 6 6 5.5713 0.3347 -0.5746 7 6 6.3645 1.3763 0.1716 8 6 6.6117 0.9050 1.5815 9 1 6.2327 -0.0532 1.9047 10 6 7.3225 1.6966 2.4584 11 7 7.7852 2.8629 2.0643 12 14 7.6283 1.1127 4.2062 13 1 8.3893 -0.1621 4.1762 14 1 8.4111 2.1387 4.9411 15 1 6.3283 0.8971 4.8907 16 6 6.2132 -0.6069 -1.3558 17 7 5.5232 -1.5203 -2.0106 18 6 4.2080 -1.5717 -1.9495 19 6 3.4960 -0.6593 -1.1873 20 6 1.9947 -0.7495 -1.1464 21 1 -0.3634 -1.0275 -0.0139 22 1 -0.3633 0.5018 0.8969 23 1 -0.3633 0.5258 -0.8829 24 1 1.8790 1.8108 -0.9917 25 1 1.4564 1.9730 0.7331 26 1 3.5849 1.0525 1.4179 27 1 3.9248 2.3081 0.2039 28 1 7.3186 1.5353 -0.3309 29 1 5.8053 2.3117 0.1939 30 1 8.2850 3.4200 2.6814 31 1 7.2906 -0.5948 -1.4309 32 1 3.6781 -2.3345 -2.5005 33 1 1.6985 -1.7950 -1.0602 34 1 1.5859 -0.3336 -2.0672 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260077734.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:15 Heat of formation + Delta-G solvation = 26.038016 kcal Electronic energy + Delta-G solvation = -16137.690152 eV Core-core repulsion = 13648.676995 eV Total energy + Delta-G solvation = -2489.013156 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.18192 -37.48146 -34.26911 -32.62163 -31.71844 -30.18637 -27.20514 -26.81448 -24.01471 -23.38882 -22.90631 -20.30469 -19.43146 -16.47170 -16.33453 -15.89910 -15.45824 -14.76092 -14.59732 -14.30949 -13.65619 -13.17326 -12.84298 -12.58020 -12.46820 -12.28058 -12.07172 -11.67416 -11.55835 -11.21212 -10.93295 -10.89986 -10.57785 -10.49935 -9.83262 -9.54719 -8.72026 -8.58719 -8.42420 -8.31985 -7.92164 -6.08417 -4.12265 1.77542 2.01487 3.30761 3.34814 3.38768 3.98333 4.35853 4.51264 4.91983 5.03989 5.10317 5.26049 5.27238 5.39538 5.44798 5.51144 5.57534 5.61128 5.69272 5.80423 5.97563 6.06225 6.18821 6.31752 6.54833 6.66766 6.69129 6.96137 7.08192 7.20376 7.38874 7.53183 7.65851 7.87101 8.25522 8.63264 8.92174 9.51975 11.01366 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.024818 B = 0.008194 C = 0.006868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.963331 B = 3416.366114 C = 4075.946291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.538 5.538 3 C 0.052 3.948 4 C -0.072 4.072 5 C -0.031 4.031 6 C -0.083 4.083 7 C 0.054 3.946 8 C -0.511 4.511 9 H 0.056 0.944 10 C 0.061 3.939 11 N -0.893 5.893 12 Si 0.894 3.106 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.276 1.276 16 C 0.082 3.918 17 N -0.491 5.491 18 C 0.070 3.930 19 C -0.141 4.141 20 C 0.106 3.894 21 H 0.066 0.934 22 H 0.069 0.931 23 H 0.023 0.977 24 H 0.034 0.966 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.030 0.970 29 H 0.034 0.966 30 H 0.263 0.737 31 H 0.150 0.850 32 H 0.142 0.858 33 H 0.084 0.916 34 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.196 -3.498 -5.235 13.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.262 5.262 3 C -0.075 4.075 4 C -0.108 4.108 5 C -0.039 4.039 6 C -0.085 4.085 7 C 0.016 3.984 8 C -0.549 4.549 9 H 0.074 0.926 10 C -0.140 4.140 11 N -0.532 5.532 12 Si 0.722 3.278 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.201 1.201 16 C -0.074 4.074 17 N -0.199 5.199 18 C -0.088 4.088 19 C -0.144 4.144 20 C -0.022 4.022 21 H 0.085 0.915 22 H 0.088 0.912 23 H 0.041 0.959 24 H 0.053 0.947 25 H 0.096 0.904 26 H 0.113 0.887 27 H 0.106 0.894 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.168 0.832 32 H 0.159 0.841 33 H 0.102 0.898 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.479 -4.184 -5.246 13.296 hybrid contribution -0.459 0.665 0.789 1.129 sum -11.938 -3.519 -4.457 13.219 Atomic orbital electron populations 1.22372 0.87429 1.01881 1.00616 1.62228 1.07314 1.14617 1.42082 1.22268 0.96617 0.88692 0.99947 1.20483 0.91769 0.98219 1.00377 1.19640 0.93359 0.95527 0.95402 1.21604 0.93707 0.98261 0.94898 1.18297 0.94316 0.91579 0.94166 1.20937 1.34755 1.04035 0.95148 0.92619 1.24968 0.95490 0.94856 0.98714 1.69936 1.36769 1.10639 1.35869 0.86614 0.78453 0.78457 0.84313 1.20160 1.21212 1.20101 1.22606 0.99981 0.90956 0.93832 1.67510 1.08221 1.23132 1.21015 1.22270 0.90202 0.97963 0.98391 1.20332 0.95506 0.97951 1.00592 1.20755 0.91114 0.98954 0.91386 0.91474 0.91209 0.95854 0.94743 0.90376 0.88706 0.89409 0.95186 0.94770 0.92724 0.83239 0.84096 0.89791 0.94042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.54 60.07 0.57 0.84 16 2 N -0.54 -7.62 4.93 -244.48 -1.21 -8.82 16 3 C 0.05 0.76 5.57 -3.70 -0.02 0.74 16 4 C -0.07 -1.29 5.33 -28.02 -0.15 -1.44 16 5 C -0.03 -0.62 5.78 -104.61 -0.60 -1.22 16 6 C -0.08 -1.81 5.09 -104.43 -0.53 -2.34 16 7 C 0.05 1.33 4.62 -29.04 -0.13 1.20 16 8 C -0.51 -13.90 9.09 -34.44 -0.31 -14.21 16 9 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 12 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 C 0.08 1.69 10.85 -17.56 -0.19 1.50 16 17 N -0.49 -9.65 10.36 -13.19 -0.14 -9.78 16 18 C 0.07 1.22 10.84 -17.46 -0.19 1.03 16 19 C -0.14 -2.45 5.79 -104.69 -0.61 -3.06 16 20 C 0.11 1.47 5.28 -5.20 -0.03 1.45 16 21 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 23 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 24 H 0.03 0.48 8.05 -51.93 -0.42 0.06 16 25 H 0.08 1.00 8.00 -51.93 -0.42 0.59 16 26 H 0.09 1.89 8.14 -51.93 -0.42 1.46 16 27 H 0.09 1.63 6.61 -51.93 -0.34 1.29 16 28 H 0.03 0.78 8.06 -51.93 -0.42 0.36 16 29 H 0.03 0.87 6.41 -51.93 -0.33 0.54 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.15 2.95 8.06 -52.48 -0.42 2.52 16 32 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.04 0.53 8.13 -51.93 -0.42 0.10 16 LS Contribution 280.80 15.07 4.23 4.23 Total: -1.00 -29.66 280.80 -8.54 -38.20 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -4.85 Total: -1.26 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -2.29 Total: -13.92 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: -0.61 Total: -43.54 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.66 -8.54 -38.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260077734.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.238 kcal (2) G-P(sol) polarization free energy of solvation -29.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds