Wall clock time and date at job start Mon Mar 30 2020 03:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47145 * 110.99821 * 2 1 4 4 C 1.52990 * 108.58866 * 165.29755 * 3 2 1 5 5 C 1.50424 * 109.82918 * 50.14070 * 4 3 2 6 6 C 1.38837 * 119.44286 * 163.49362 * 5 4 3 7 7 C 1.50698 * 120.42694 * 359.63477 * 6 5 4 8 8 C 1.50701 * 109.47385 * 85.04230 * 7 6 5 9 9 H 1.07992 * 119.99900 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00021 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99994 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00176 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47313 * 59.99954 * 12 10 8 14 14 H 1.48505 * 109.47550 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47227 * 300.00128 * 12 10 8 16 16 C 1.38158 * 119.13925 * 179.67197 * 6 5 4 17 17 N 1.31881 * 120.64355 * 359.96354 * 16 6 5 18 18 C 1.31764 * 121.74937 * 0.09691 * 17 16 6 19 19 C 1.38021 * 121.90406 * 343.24615 * 5 4 3 20 20 C 1.46703 * 110.99595 * 236.82348 * 2 1 3 21 21 H 1.08992 * 109.47459 * 179.22266 * 1 2 3 22 22 H 1.09004 * 109.47040 * 299.22417 * 1 2 3 23 23 H 1.09000 * 109.47033 * 59.22369 * 1 2 3 24 24 H 1.09005 * 109.61811 * 285.02408 * 3 2 1 25 25 H 1.08998 * 109.62044 * 45.56209 * 3 2 1 26 26 H 1.09006 * 109.40895 * 290.03297 * 4 3 2 27 27 H 1.08994 * 109.35226 * 170.21748 * 4 3 2 28 28 H 1.09003 * 109.46354 * 205.04139 * 7 6 5 29 29 H 1.08995 * 109.47193 * 325.03446 * 7 6 5 30 30 H 0.96998 * 120.00048 * 179.97438 * 11 10 8 31 31 H 1.08003 * 119.67848 * 179.97438 * 16 6 5 32 32 H 1.07995 * 119.57868 * 179.97438 * 18 17 16 33 33 H 1.09004 * 109.32015 * 296.29353 * 20 2 1 34 34 H 1.08996 * 109.32055 * 55.92496 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9963 1.3737 0.0000 4 6 3.4806 1.3264 0.3680 5 6 4.1860 0.3091 -0.4865 6 6 5.5713 0.3347 -0.5746 7 6 6.3645 1.3763 0.1716 8 6 6.6117 0.9050 1.5815 9 1 6.2327 -0.0532 1.9047 10 6 7.3225 1.6966 2.4584 11 7 7.7852 2.8629 2.0643 12 14 7.6283 1.1127 4.2062 13 1 8.3893 -0.1621 4.1762 14 1 8.4111 2.1387 4.9411 15 1 6.3283 0.8971 4.8907 16 6 6.2132 -0.6069 -1.3558 17 7 5.5232 -1.5203 -2.0106 18 6 4.2080 -1.5717 -1.9495 19 6 3.4960 -0.6593 -1.1873 20 6 1.9947 -0.7495 -1.1464 21 1 -0.3634 -1.0275 -0.0139 22 1 -0.3633 0.5018 0.8969 23 1 -0.3633 0.5258 -0.8829 24 1 1.8790 1.8108 -0.9917 25 1 1.4564 1.9730 0.7331 26 1 3.5849 1.0525 1.4179 27 1 3.9248 2.3081 0.2039 28 1 7.3186 1.5353 -0.3309 29 1 5.8053 2.3117 0.1939 30 1 8.2850 3.4200 2.6814 31 1 7.2906 -0.5948 -1.4309 32 1 3.6781 -2.3345 -2.5005 33 1 1.6985 -1.7950 -1.0602 34 1 1.5859 -0.3336 -2.0672 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260077734.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:15 Heat of formation + Delta-G solvation = 7.065303 kcal Electronic energy + Delta-G solvation = -16138.512870 eV Core-core repulsion = 13648.676995 eV Total energy + Delta-G solvation = -2489.835875 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.61503 -38.68504 -36.04949 -34.32651 -33.21797 -31.62897 -29.06168 -27.89324 -25.55816 -25.04489 -24.12771 -21.92878 -20.72844 -18.54112 -17.82051 -17.29244 -16.77988 -16.47147 -15.88579 -15.47683 -15.07629 -14.67687 -14.31084 -14.12043 -14.02457 -13.68532 -13.35058 -13.13716 -12.95113 -12.82883 -12.59625 -12.43986 -12.17404 -12.09087 -11.66858 -11.46592 -10.62481 -10.21805 -10.03513 -9.66958 -9.22024 -8.21341 -6.33008 0.28171 0.47214 1.39325 1.40758 1.49175 2.38969 2.91096 3.00295 3.10496 3.60753 3.78131 3.82466 4.03379 4.13918 4.32758 4.33693 4.43340 4.46753 4.64690 4.72821 4.75927 4.84702 4.88848 4.99308 5.07885 5.16336 5.20596 5.34451 5.38505 5.71787 5.79851 5.91567 6.02101 6.16103 6.19628 6.76838 7.11787 7.35025 8.88099 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.024818 B = 0.008194 C = 0.006868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.963331 B = 3416.366114 C = 4075.946291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.559 5.559 3 C 0.062 3.938 4 C -0.069 4.069 5 C -0.044 4.044 6 C -0.111 4.111 7 C 0.067 3.933 8 C -0.522 4.522 9 H 0.046 0.954 10 C 0.013 3.987 11 N -0.926 5.926 12 Si 0.958 3.042 13 H -0.272 1.272 14 H -0.279 1.279 15 H -0.268 1.268 16 C 0.068 3.932 17 N -0.501 5.501 18 C 0.078 3.922 19 C -0.136 4.136 20 C 0.108 3.892 21 H 0.082 0.918 22 H 0.075 0.925 23 H 0.036 0.964 24 H 0.043 0.957 25 H 0.094 0.906 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.004 0.996 29 H 0.017 0.983 30 H 0.266 0.734 31 H 0.147 0.853 32 H 0.186 0.814 33 H 0.109 0.891 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.661 -4.993 -5.384 16.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.283 5.283 3 C -0.066 4.066 4 C -0.106 4.106 5 C -0.052 4.052 6 C -0.113 4.113 7 C 0.029 3.971 8 C -0.560 4.560 9 H 0.064 0.936 10 C -0.186 4.186 11 N -0.565 5.565 12 Si 0.782 3.218 13 H -0.197 1.197 14 H -0.204 1.204 15 H -0.193 1.193 16 C -0.086 4.086 17 N -0.210 5.210 18 C -0.081 4.081 19 C -0.139 4.139 20 C -0.020 4.020 21 H 0.101 0.899 22 H 0.093 0.907 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.112 0.888 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.023 0.977 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.164 0.836 32 H 0.203 0.797 33 H 0.127 0.873 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.951 -5.681 -5.399 16.002 hybrid contribution 0.237 1.088 0.767 1.352 sum -13.714 -4.593 -4.633 15.186 Atomic orbital electron populations 1.22438 0.84861 1.03244 1.01548 1.62194 1.09638 1.13955 1.42548 1.22145 0.93835 0.89808 1.00809 1.20397 0.94689 0.96876 0.98656 1.19893 0.92649 0.96648 0.96048 1.21364 0.94870 0.98590 0.96508 1.17986 0.93353 0.92088 0.93632 1.21158 1.34694 1.03648 0.96503 0.93552 1.25774 0.95168 0.94897 1.02764 1.70045 1.37455 1.11706 1.37338 0.85613 0.78592 0.78111 0.79465 1.19750 1.20364 1.19314 1.22548 1.00185 0.91459 0.94441 1.67568 1.09642 1.22708 1.21038 1.23027 0.89452 0.98189 0.97436 1.20767 0.97878 0.96338 0.98870 1.20873 0.88176 1.00610 0.92370 0.89925 0.90653 0.94535 0.93865 0.88776 0.91245 0.91156 0.97728 0.96461 0.92494 0.83596 0.79696 0.87291 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.54 127.69 1.22 1.67 16 2 N -0.56 -13.99 4.93 -927.40 -4.57 -18.56 16 3 C 0.06 1.68 5.57 86.25 0.48 2.16 16 4 C -0.07 -2.54 5.33 29.76 0.16 -2.38 16 5 C -0.04 -1.75 5.78 -19.86 -0.11 -1.87 16 6 C -0.11 -5.05 5.09 -19.74 -0.10 -5.15 16 7 C 0.07 3.53 4.62 29.10 0.13 3.66 16 8 C -0.52 -29.56 9.09 25.60 0.23 -29.33 16 9 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 10 C 0.01 0.72 5.46 84.65 0.46 1.18 16 11 N -0.93 -54.81 13.29 21.45 0.28 -54.52 16 12 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 13 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 14 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 16 C 0.07 2.90 10.85 84.67 0.92 3.82 16 17 N -0.50 -19.20 10.36 -195.65 -2.03 -21.23 16 18 C 0.08 2.47 10.84 84.78 0.92 3.39 16 19 C -0.14 -4.41 5.79 -19.91 -0.12 -4.53 16 20 C 0.11 2.54 5.28 85.52 0.45 2.99 16 21 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 22 H 0.07 1.21 8.11 -2.38 -0.02 1.19 16 23 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.04 1.10 8.05 -2.38 -0.02 1.08 16 25 H 0.09 2.23 8.00 -2.39 -0.02 2.21 16 26 H 0.07 2.87 8.14 -2.38 -0.02 2.85 16 27 H 0.07 2.77 6.61 -2.39 -0.02 2.75 16 28 H 0.00 0.25 8.06 -2.39 -0.02 0.23 16 29 H 0.02 0.95 6.41 -2.39 -0.02 0.93 16 30 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 31 H 0.15 6.08 8.06 -2.91 -0.02 6.06 16 32 H 0.19 4.16 8.06 -2.91 -0.02 4.14 16 33 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 Total: -1.00 -65.36 280.80 1.43 -63.93 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 1.08 Total: 8.48 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 4.65 Total: -24.38 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -6.32 Total: -94.32 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -65.36 1.43 -63.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260077734.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.998 kcal (2) G-P(sol) polarization free energy of solvation -65.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds