Wall clock time and date at job start Mon Mar 30 2020 03:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48096 * 111.00214 * 2 1 4 4 C 1.51436 * 105.59640 * 92.07613 * 3 2 1 5 5 N 1.36956 * 142.44828 * 196.97021 * 4 3 2 6 6 H 0.96993 * 124.72657 * 0.02562 * 5 4 3 7 7 C 1.34859 * 110.54836 * 179.97438 * 5 4 3 8 8 C 1.50698 * 126.03256 * 180.11010 * 7 5 4 9 9 C 1.53003 * 117.49854 * 8.89554 * 8 7 5 10 10 C 1.53000 * 117.49817 * 300.27067 * 8 7 5 11 11 C 1.39280 * 107.93141 * 0.34180 * 7 5 4 12 12 C 1.41347 * 127.13917 * 179.76717 * 11 7 5 13 13 H 1.07996 * 120.00260 * 359.97438 * 12 11 7 14 14 C 1.39677 * 119.99769 * 180.02562 * 12 11 7 15 15 N 1.31056 * 120.00275 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99859 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47249 * 89.99876 * 16 14 12 18 18 H 1.48500 * 109.46831 * 209.99965 * 16 14 12 19 19 H 1.48495 * 109.46787 * 329.99470 * 16 14 12 20 20 C 1.34430 * 108.55812 * 17.29560 * 4 3 2 21 21 C 1.48159 * 110.99857 * 114.23957 * 2 1 3 22 22 H 1.09003 * 109.46977 * 59.87348 * 1 2 3 23 23 H 1.08994 * 109.47339 * 179.87339 * 1 2 3 24 24 H 1.09008 * 109.47000 * 299.87587 * 1 2 3 25 25 H 1.09005 * 110.22504 * 333.04616 * 3 2 1 26 26 H 1.09004 * 110.22677 * 211.10730 * 3 2 1 27 27 H 1.08998 * 115.54970 * 154.60440 * 8 7 5 28 28 H 1.08993 * 117.50120 * 359.97438 * 9 8 7 29 29 H 1.08998 * 117.49387 * 145.02189 * 9 8 7 30 30 H 1.08994 * 117.50015 * 214.97676 * 10 8 7 31 31 H 1.08997 * 117.49940 * 0.02562 * 10 8 7 32 32 H 0.96995 * 120.00057 * 180.02562 * 15 14 12 33 33 H 1.08996 * 110.25127 * 26.85581 * 21 2 1 34 34 H 1.09005 * 110.24861 * 148.86941 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9998 1.3826 0.0000 4 6 2.1950 1.7437 1.4576 5 7 2.3761 2.8106 2.2971 6 1 2.4172 3.7369 2.0124 7 6 2.4881 2.3939 3.5748 8 6 2.6935 3.2752 4.7798 9 6 2.5771 4.7873 4.5773 10 6 3.9485 4.1498 4.8097 11 6 2.3857 1.0049 3.5834 12 6 2.4527 0.1512 4.7079 13 1 2.5985 0.5673 5.6938 14 6 2.3314 -1.2305 4.5439 15 7 2.1550 -1.7355 3.3475 16 14 2.4207 -2.3589 6.0301 17 1 1.0574 -2.5552 6.5851 18 1 2.9827 -3.6714 5.6219 19 1 3.2929 -1.7470 7.0644 20 6 2.1947 0.6117 2.1827 21 6 1.9999 -0.5679 1.2612 22 1 -0.3633 0.5158 -0.8889 23 1 -0.3634 -1.0276 -0.0023 24 1 -0.3633 0.5119 0.8912 25 1 1.2837 2.0611 -0.4636 26 1 2.9524 1.4205 -0.5284 27 1 2.3429 2.8655 5.7271 28 1 2.3524 5.1447 3.5725 29 1 2.1498 5.3726 5.3915 30 1 4.4233 4.3159 5.7766 31 1 4.6254 4.0881 3.9576 32 1 2.0704 -2.6950 3.2337 33 1 1.2834 -1.2679 1.6909 34 1 2.9524 -1.0658 1.0793 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260084318.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:17 Heat of formation + Delta-G solvation = 100.747668 kcal Electronic energy + Delta-G solvation = -16456.656779 eV Core-core repulsion = 13970.883276 eV Total energy + Delta-G solvation = -2485.773503 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.96072 -37.11098 -35.32760 -33.42624 -29.44907 -29.02796 -26.94327 -25.05465 -24.55173 -21.85182 -21.57257 -20.13080 -19.01268 -17.58014 -16.37431 -15.45457 -14.90390 -14.58751 -14.57167 -13.83227 -13.57031 -12.77253 -12.55085 -12.39835 -11.47444 -11.44463 -11.17461 -11.12754 -11.01848 -10.93749 -10.79534 -10.66773 -10.30417 -9.95588 -9.74643 -9.50933 -9.28171 -9.12365 -7.86153 -7.10337 -6.43672 -6.19761 -3.88622 3.08419 3.22615 3.26382 3.51288 4.15293 4.25163 4.36632 4.65033 5.02414 5.35676 5.53418 5.56213 5.74805 5.89981 5.91524 5.97568 6.04330 6.22407 6.26087 6.37468 6.45956 6.52724 6.56560 6.70876 6.85788 7.19534 7.39153 7.45348 7.51565 7.76321 7.76995 8.10026 8.26794 8.52843 8.90330 9.04507 9.28105 9.32096 10.60552 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.015493 B = 0.013979 C = 0.007757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.783118 B = 2002.579307 C = 3608.750636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.522 5.522 3 C 0.130 3.870 4 C -0.090 4.090 5 N -0.544 5.544 6 H 0.380 0.620 7 C -0.118 4.118 8 C -0.019 4.019 9 C -0.201 4.201 10 C -0.192 4.192 11 C 0.083 3.917 12 C -0.439 4.439 13 H 0.067 0.933 14 C 0.072 3.928 15 N -0.820 5.820 16 Si 0.905 3.095 17 H -0.275 1.275 18 H -0.281 1.281 19 H -0.268 1.268 20 C -0.174 4.174 21 C 0.138 3.862 22 H 0.052 0.948 23 H 0.063 0.937 24 H 0.029 0.971 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.269 0.731 33 H 0.101 0.899 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.937 4.887 -2.075 5.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.245 5.245 3 C 0.000 4.000 4 C -0.203 4.203 5 N -0.142 5.142 6 H 0.213 0.787 7 C -0.224 4.224 8 C -0.038 4.038 9 C -0.238 4.238 10 C -0.229 4.229 11 C 0.076 3.924 12 C -0.472 4.472 13 H 0.085 0.915 14 C -0.140 4.140 15 N -0.450 5.450 16 Si 0.731 3.269 17 H -0.201 1.201 18 H -0.206 1.206 19 H -0.192 1.192 20 C -0.186 4.186 21 C 0.012 3.988 22 H 0.070 0.930 23 H 0.081 0.919 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.127 0.873 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.803 4.430 -2.666 5.232 hybrid contribution -0.141 0.506 1.323 1.423 sum -0.944 4.936 -1.343 5.202 Atomic orbital electron populations 1.22426 0.89523 1.01273 0.99665 1.65831 1.07600 1.13124 1.37960 1.20992 0.99290 0.90430 0.89295 1.21333 1.14971 0.89043 0.94927 1.39866 1.63801 1.05452 1.05067 0.78739 1.18946 1.28454 0.92600 0.82378 1.19949 0.98950 0.88084 0.96777 1.22872 1.01618 0.97868 1.01453 1.23001 0.91229 1.06680 1.02029 1.17589 0.95857 0.88183 0.90786 1.18753 1.44586 0.90418 0.93436 0.91467 1.25750 0.93018 0.98835 0.96412 1.70044 1.40837 1.12832 1.21323 0.86376 0.78784 0.79495 0.82203 1.20089 1.20646 1.19233 1.21369 1.11348 0.92533 0.93396 1.21221 1.00491 0.94736 0.82356 0.92951 0.91854 0.95193 0.93130 0.90745 0.87317 0.90262 0.89520 0.89607 0.89658 0.91979 0.88137 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.17 60.06 0.55 0.92 16 2 N -0.52 -10.69 5.83 -243.05 -1.42 -12.11 16 3 C 0.13 2.55 6.67 -3.95 -0.03 2.52 16 4 C -0.09 -2.07 8.09 -81.29 -0.66 -2.73 16 5 N -0.54 -11.86 5.82 -4.49 -0.03 -11.88 16 6 H 0.38 7.05 7.87 -40.82 -0.32 6.73 16 7 C -0.12 -2.80 6.80 -80.88 -0.55 -3.35 16 8 C -0.02 -0.37 5.99 -91.77 -0.55 -0.92 16 9 C -0.20 -3.27 10.13 -26.73 -0.27 -3.54 16 10 C -0.19 -3.30 10.23 -26.73 -0.27 -3.57 16 11 C 0.08 2.25 6.09 -104.90 -0.64 1.61 16 12 C -0.44 -11.98 9.19 -37.86 -0.35 -12.33 16 13 H 0.07 1.78 7.47 -52.49 -0.39 1.38 16 14 C 0.07 1.86 5.49 -17.35 -0.10 1.76 16 15 N -0.82 -21.33 7.89 55.53 0.44 -20.89 16 16 Si 0.91 19.69 29.56 -169.99 -5.02 14.66 16 17 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 20 C -0.17 -4.51 6.14 -102.42 -0.63 -5.14 16 21 C 0.14 3.29 4.71 -4.16 -0.02 3.27 16 22 H 0.05 0.81 8.09 -51.93 -0.42 0.39 16 23 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.03 0.60 8.06 -51.92 -0.42 0.18 16 25 H 0.05 0.88 7.76 -51.93 -0.40 0.48 16 26 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.11 2.21 7.82 -51.93 -0.41 1.80 16 28 H 0.08 1.24 7.11 -51.93 -0.37 0.87 16 29 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.27 6.51 8.30 -40.82 -0.34 6.17 16 33 H 0.10 2.51 5.78 -51.93 -0.30 2.21 16 34 H 0.06 1.61 8.10 -51.93 -0.42 1.19 16 LS Contribution 276.17 15.07 4.16 4.16 Total: -1.00 -28.21 276.17 -10.07 -38.29 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -4.70 Total: 9.26 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -3.51 Total: -21.49 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: -1.01 Total: -44.89 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.21 -10.07 -38.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260084318.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.035 kcal (2) G-P(sol) polarization free energy of solvation -28.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds