Wall clock time and date at job start Mon Mar 30 2020 03:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48096 * 111.00214 * 2 1 4 4 C 1.51436 * 105.59640 * 92.07613 * 3 2 1 5 5 N 1.36956 * 142.44828 * 196.97021 * 4 3 2 6 6 H 0.96993 * 124.72657 * 0.02562 * 5 4 3 7 7 C 1.34859 * 110.54836 * 179.97438 * 5 4 3 8 8 C 1.50698 * 126.03256 * 180.11010 * 7 5 4 9 9 C 1.53003 * 117.49854 * 8.89554 * 8 7 5 10 10 C 1.53000 * 117.49817 * 300.27067 * 8 7 5 11 11 C 1.39280 * 107.93141 * 0.34180 * 7 5 4 12 12 C 1.41347 * 127.13917 * 179.76717 * 11 7 5 13 13 H 1.07996 * 120.00260 * 359.97438 * 12 11 7 14 14 C 1.39677 * 119.99769 * 180.02562 * 12 11 7 15 15 N 1.31056 * 120.00275 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99859 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47249 * 89.99876 * 16 14 12 18 18 H 1.48500 * 109.46831 * 209.99965 * 16 14 12 19 19 H 1.48495 * 109.46787 * 329.99470 * 16 14 12 20 20 C 1.34430 * 108.55812 * 17.29560 * 4 3 2 21 21 C 1.48159 * 110.99857 * 114.23957 * 2 1 3 22 22 H 1.09003 * 109.46977 * 59.87348 * 1 2 3 23 23 H 1.08994 * 109.47339 * 179.87339 * 1 2 3 24 24 H 1.09008 * 109.47000 * 299.87587 * 1 2 3 25 25 H 1.09005 * 110.22504 * 333.04616 * 3 2 1 26 26 H 1.09004 * 110.22677 * 211.10730 * 3 2 1 27 27 H 1.08998 * 115.54970 * 154.60440 * 8 7 5 28 28 H 1.08993 * 117.50120 * 359.97438 * 9 8 7 29 29 H 1.08998 * 117.49387 * 145.02189 * 9 8 7 30 30 H 1.08994 * 117.50015 * 214.97676 * 10 8 7 31 31 H 1.08997 * 117.49940 * 0.02562 * 10 8 7 32 32 H 0.96995 * 120.00057 * 180.02562 * 15 14 12 33 33 H 1.08996 * 110.25127 * 26.85581 * 21 2 1 34 34 H 1.09005 * 110.24861 * 148.86941 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9998 1.3826 0.0000 4 6 2.1950 1.7437 1.4576 5 7 2.3761 2.8106 2.2971 6 1 2.4172 3.7369 2.0124 7 6 2.4881 2.3939 3.5748 8 6 2.6935 3.2752 4.7798 9 6 2.5771 4.7873 4.5773 10 6 3.9485 4.1498 4.8097 11 6 2.3857 1.0049 3.5834 12 6 2.4527 0.1512 4.7079 13 1 2.5985 0.5673 5.6938 14 6 2.3314 -1.2305 4.5439 15 7 2.1550 -1.7355 3.3475 16 14 2.4207 -2.3589 6.0301 17 1 1.0574 -2.5552 6.5851 18 1 2.9827 -3.6714 5.6219 19 1 3.2929 -1.7470 7.0644 20 6 2.1947 0.6117 2.1827 21 6 1.9999 -0.5679 1.2612 22 1 -0.3633 0.5158 -0.8889 23 1 -0.3634 -1.0276 -0.0023 24 1 -0.3633 0.5119 0.8912 25 1 1.2837 2.0611 -0.4636 26 1 2.9524 1.4205 -0.5284 27 1 2.3429 2.8655 5.7271 28 1 2.3524 5.1447 3.5725 29 1 2.1498 5.3726 5.3915 30 1 4.4233 4.3159 5.7766 31 1 4.6254 4.0881 3.9576 32 1 2.0704 -2.6950 3.2337 33 1 1.2834 -1.2679 1.6909 34 1 2.9524 -1.0658 1.0793 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260084318.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:16 Heat of formation + Delta-G solvation = 82.909026 kcal Electronic energy + Delta-G solvation = -16457.430321 eV Core-core repulsion = 13970.883276 eV Total energy + Delta-G solvation = -2486.547044 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.73921 -38.71973 -36.88560 -35.33679 -31.32049 -30.70862 -28.70506 -26.68449 -26.41828 -23.24550 -23.14841 -21.85865 -20.83114 -19.38610 -18.13725 -17.28142 -16.59069 -16.24189 -16.18475 -15.40828 -15.15857 -14.47473 -14.31115 -14.04771 -13.33043 -13.14132 -12.86505 -12.73872 -12.57932 -12.50501 -12.35879 -12.25168 -12.07975 -11.63408 -11.27426 -11.26296 -11.02988 -11.00498 -9.54279 -9.02436 -8.26330 -8.06954 -5.85302 1.33805 1.42527 1.53838 1.74591 2.33734 2.37035 2.63596 3.14376 3.37706 3.68132 3.93575 4.08176 4.21024 4.37357 4.42131 4.46698 4.70279 4.73410 4.76811 4.82041 4.98291 5.02797 5.11523 5.23222 5.27129 5.33286 5.46644 5.62086 5.64537 5.91949 6.04639 6.29419 6.40489 6.62707 6.97520 7.21611 7.34546 7.49896 8.71002 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.015493 B = 0.013979 C = 0.007757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.783118 B = 2002.579307 C = 3608.750636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.520 5.520 3 C 0.134 3.866 4 C -0.089 4.089 5 N -0.530 5.530 6 H 0.400 0.600 7 C -0.107 4.107 8 C -0.062 4.062 9 C -0.168 4.168 10 C -0.177 4.177 11 C 0.020 3.980 12 C -0.474 4.474 13 H 0.059 0.941 14 C 0.026 3.974 15 N -0.841 5.841 16 Si 0.973 3.027 17 H -0.271 1.271 18 H -0.274 1.274 19 H -0.268 1.268 20 C -0.220 4.220 21 C 0.154 3.846 22 H 0.088 0.912 23 H 0.069 0.931 24 H 0.005 0.995 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.272 0.728 33 H 0.082 0.918 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.096 6.666 -2.575 7.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.242 5.242 3 C 0.005 3.995 4 C -0.203 4.203 5 N -0.129 5.129 6 H 0.235 0.765 7 C -0.215 4.215 8 C -0.082 4.082 9 C -0.205 4.205 10 C -0.215 4.215 11 C 0.013 3.987 12 C -0.507 4.507 13 H 0.077 0.923 14 C -0.183 4.183 15 N -0.472 5.472 16 Si 0.796 3.204 17 H -0.196 1.196 18 H -0.199 1.199 19 H -0.192 1.192 20 C -0.232 4.232 21 C 0.027 3.973 22 H 0.107 0.893 23 H 0.088 0.912 24 H 0.024 0.976 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.115 0.885 28 H 0.108 0.892 29 H 0.132 0.868 30 H 0.126 0.874 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.965 6.242 -3.190 7.076 hybrid contribution -0.091 0.097 1.449 1.455 sum -1.056 6.339 -1.742 6.658 Atomic orbital electron populations 1.22486 0.87927 1.02023 1.00100 1.65767 1.09021 1.13761 1.35673 1.21147 1.00900 0.90207 0.87274 1.21870 1.13555 0.88473 0.96385 1.39866 1.62226 1.06349 1.04425 0.76518 1.19441 1.25592 0.92422 0.84026 1.19953 1.02945 0.90280 0.94989 1.22983 1.00100 0.94345 1.03070 1.23028 0.90965 1.04429 1.03041 1.18144 0.98642 0.90150 0.91774 1.18935 1.46746 0.91676 0.93385 0.92296 1.26491 0.92768 0.99780 0.99275 1.70193 1.41267 1.13038 1.22658 0.85348 0.78739 0.77539 0.78740 1.19620 1.19892 1.19211 1.21690 1.13409 0.94399 0.93698 1.20858 0.98900 0.94143 0.83441 0.89345 0.91206 0.97638 0.89949 0.89337 0.88469 0.89231 0.86800 0.87435 0.90218 0.91815 0.89992 0.94160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.82 9.17 127.69 1.17 1.99 16 2 N -0.52 -20.83 5.83 -922.89 -5.38 -26.21 16 3 C 0.13 5.00 6.67 85.56 0.57 5.57 16 4 C -0.09 -4.03 8.09 41.12 0.33 -3.70 16 5 N -0.53 -22.53 5.82 -168.11 -0.98 -23.51 16 6 H 0.40 13.79 7.87 -92.71 -0.73 13.06 16 7 C -0.11 -5.12 6.80 42.34 0.29 -4.83 16 8 C -0.06 -2.47 5.99 -11.54 -0.07 -2.53 16 9 C -0.17 -4.90 10.13 30.60 0.31 -4.59 16 10 C -0.18 -5.66 10.23 30.60 0.31 -5.34 16 11 C 0.02 1.11 6.09 -20.04 -0.12 0.99 16 12 C -0.47 -27.16 9.19 23.38 0.21 -26.95 16 13 H 0.06 3.29 7.47 -2.91 -0.02 3.27 16 14 C 0.03 1.39 5.49 85.16 0.47 1.86 16 15 N -0.84 -45.77 7.89 21.79 0.17 -45.60 16 16 Si 0.97 41.84 29.56 68.60 2.03 43.87 16 17 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 19 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 20 C -0.22 -11.72 6.14 -18.44 -0.11 -11.83 16 21 C 0.15 7.56 4.71 85.39 0.40 7.96 16 22 H 0.09 2.45 8.09 -2.39 -0.02 2.43 16 23 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 24 H 0.00 0.20 8.06 -2.38 -0.02 0.18 16 25 H 0.08 2.56 7.76 -2.38 -0.02 2.54 16 26 H 0.09 3.07 8.14 -2.38 -0.02 3.05 16 27 H 0.10 4.01 7.82 -2.39 -0.02 3.99 16 28 H 0.09 2.44 7.11 -2.39 -0.02 2.43 16 29 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 31 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.27 13.71 8.30 -92.71 -0.77 12.94 16 33 H 0.08 4.29 5.78 -2.39 -0.01 4.28 16 34 H 0.04 2.11 8.10 -2.38 -0.02 2.09 16 Total: -1.00 -63.84 276.17 -0.02 -63.86 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.38 Total: 28.99 kcal Atomic # 6 Polarization: -45.18 SS G_CDS: 3.77 Total: -41.41 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -6.19 Total: -95.32 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -63.84 -0.02 -63.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260084318.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.771 kcal (2) G-P(sol) polarization free energy of solvation -63.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds