Wall clock time and date at job start Mon Mar 30 2020 03:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48566 * 110.99675 * 2 1 4 4 C 1.54382 * 104.59281 * 159.03666 * 3 2 1 5 5 C 1.54261 * 105.06282 * 336.14760 * 4 3 2 6 6 H 1.08993 * 110.32347 * 241.10455 * 5 4 3 7 7 C 1.50696 * 110.32318 * 118.89451 * 5 4 3 8 8 H 1.07999 * 120.00211 * 309.43892 * 7 5 4 9 9 C 1.37880 * 120.00286 * 129.44923 * 7 5 4 10 10 N 1.31513 * 119.99463 * 359.97438 * 9 7 5 11 11 Si 1.86797 * 120.00485 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47170 * 89.99353 * 11 9 7 13 13 H 1.48498 * 109.47317 * 209.99821 * 11 9 7 14 14 H 1.48498 * 109.46778 * 329.99768 * 11 9 7 15 15 C 1.48561 * 111.00091 * 115.41513 * 2 1 3 16 16 H 1.09004 * 110.41326 * 319.86231 * 15 2 1 17 17 C 1.50703 * 110.41038 * 82.18151 * 15 2 1 18 18 C 1.38651 * 120.78676 * 33.97588 * 17 15 2 19 19 C 1.38204 * 119.16226 * 180.21812 * 18 17 15 20 20 N 1.31874 * 120.76053 * 359.47857 * 19 18 17 21 21 C 1.31866 * 121.72740 * 0.27439 * 20 19 18 22 22 C 1.38200 * 120.76469 * 359.97438 * 21 20 19 23 23 H 1.09000 * 109.47627 * 304.58092 * 1 2 3 24 24 H 1.09005 * 109.47034 * 64.58357 * 1 2 3 25 25 H 1.09004 * 109.47069 * 184.57986 * 1 2 3 26 26 H 1.08999 * 110.41097 * 277.81365 * 3 2 1 27 27 H 1.09004 * 110.41286 * 40.26090 * 3 2 1 28 28 H 1.09002 * 110.32072 * 95.04349 * 4 3 2 29 29 H 1.09002 * 110.32539 * 217.14541 * 4 3 2 30 30 H 0.97002 * 120.00068 * 180.02562 * 10 9 7 31 31 H 1.08000 * 120.42159 * 0.02562 * 18 17 15 32 32 H 1.07994 * 119.62020 * 179.75285 * 19 18 17 33 33 H 1.08001 * 119.61816 * 180.02562 * 21 20 19 34 34 H 1.08006 * 120.42210 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3870 0.0000 4 6 3.4432 1.2503 0.5345 5 6 3.4432 -0.0538 1.3586 6 1 3.6935 0.1556 2.3985 7 6 4.4180 -1.0428 0.7733 8 1 4.3867 -1.2722 -0.2816 9 6 5.3498 -1.6550 1.5845 10 7 5.3881 -1.3754 2.8690 11 14 6.5577 -2.8815 0.8592 12 1 7.7810 -2.1671 0.4137 13 1 6.9196 -3.8881 1.8892 14 1 5.9326 -3.5641 -0.3020 15 6 2.0014 -0.5952 1.2527 16 1 1.4085 -0.2729 2.1087 17 6 2.0104 -2.0992 1.1575 18 6 2.2547 -2.7324 -0.0515 19 6 2.2505 -4.1135 -0.1014 20 7 2.0280 -4.8270 0.9851 21 6 1.7970 -4.2589 2.1525 22 6 1.7807 -2.8827 2.2781 23 1 -0.3634 0.5832 0.8461 24 1 -0.3633 0.4411 -0.9282 25 1 -0.3633 -1.0244 0.0821 26 1 2.0078 1.7917 -1.0121 27 1 1.4097 2.0213 0.6602 28 1 4.1482 1.1750 -0.2934 29 1 3.6942 2.1006 1.1685 30 1 6.0439 -1.8057 3.4397 31 1 2.4428 -2.1536 -0.9437 32 1 2.4360 -4.6143 -1.0401 33 1 1.6193 -4.8763 3.0207 34 1 1.5905 -2.4233 3.2369 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260101923.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:10 Heat of formation + Delta-G solvation = 41.058409 kcal Electronic energy + Delta-G solvation = -16828.949602 eV Core-core repulsion = 14340.587779 eV Total energy + Delta-G solvation = -2488.361823 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.55655 -37.85248 -33.21188 -32.02472 -30.88846 -30.28988 -27.56741 -25.69829 -23.95870 -22.55460 -22.18725 -20.00187 -19.26125 -16.82771 -15.74038 -15.31744 -14.93955 -14.68978 -14.34922 -14.05739 -13.49032 -13.05147 -12.81194 -12.71497 -12.21349 -11.83751 -11.58483 -11.21129 -11.00248 -10.84428 -10.61407 -10.53942 -10.46260 -10.21335 -9.20971 -9.00756 -8.62730 -8.48540 -8.35086 -8.17584 -7.91561 -6.05598 -4.03767 2.07627 2.28722 3.30677 3.39152 3.43292 4.43587 4.57034 4.76043 5.21836 5.24433 5.51134 5.60794 5.65906 5.67780 5.80789 5.89506 6.06555 6.11079 6.14114 6.18846 6.25632 6.41828 6.54751 6.67455 6.79509 6.82316 6.94884 7.20627 7.30454 7.43740 7.64749 7.71834 7.79619 7.90765 8.40749 8.80772 9.02847 9.58047 11.03854 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.019119 B = 0.014584 C = 0.009945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.127503 B = 1919.409296 C = 2814.671368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.505 5.505 3 C 0.035 3.965 4 C -0.120 4.120 5 C 0.042 3.958 6 H 0.073 0.927 7 C -0.492 4.492 8 H 0.059 0.941 9 C 0.070 3.930 10 N -0.893 5.893 11 Si 0.880 3.120 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.270 1.270 15 C 0.096 3.904 16 H 0.037 0.963 17 C 0.039 3.961 18 C -0.115 4.115 19 C 0.068 3.932 20 N -0.504 5.504 21 C 0.080 3.920 22 C -0.170 4.170 23 H 0.020 0.980 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.030 0.970 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.261 0.739 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.744 1.745 -2.991 8.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.228 5.228 3 C -0.093 4.093 4 C -0.158 4.158 5 C 0.022 3.978 6 H 0.091 0.909 7 C -0.530 4.530 8 H 0.077 0.923 9 C -0.132 4.132 10 N -0.531 5.531 11 Si 0.708 3.292 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.195 1.195 15 C -0.013 4.013 16 H 0.054 0.946 17 C 0.030 3.970 18 C -0.135 4.135 19 C -0.087 4.087 20 N -0.214 5.214 21 C -0.077 4.077 22 C -0.190 4.190 23 H 0.038 0.962 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.048 0.952 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.151 0.849 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.481 0.491 -3.369 8.219 hybrid contribution 0.506 0.705 0.557 1.031 sum -6.974 1.195 -2.812 7.614 Atomic orbital electron populations 1.22481 0.89786 1.01238 0.99910 1.65191 1.06244 1.15205 1.36209 1.23072 0.97137 0.89303 0.99756 1.22595 0.93872 0.99254 1.00119 1.19684 0.88656 0.91166 0.98266 0.90876 1.20942 1.14429 1.22843 0.94771 0.92268 1.24902 0.97171 0.96313 0.94782 1.69861 1.35877 1.43282 1.04051 0.86746 0.81668 0.81463 0.79324 1.20719 1.21345 1.19480 1.22081 1.00027 0.90320 0.88851 0.94557 1.19662 0.90049 0.94849 0.92405 1.21797 0.97891 0.94525 0.99314 1.22488 0.98311 0.91595 0.96313 1.67468 1.13240 1.41367 0.99364 1.22322 0.97945 0.92397 0.95016 1.21777 1.03372 0.94931 0.98931 0.96182 0.92067 0.91978 0.91406 0.95194 0.91466 0.93520 0.92957 0.84857 0.84336 0.84303 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.44 60.06 0.57 0.80 16 2 N -0.50 -9.18 4.52 -231.71 -1.05 -10.23 16 3 C 0.04 0.60 6.49 -2.18 -0.01 0.59 16 4 C -0.12 -2.39 6.64 -25.35 -0.17 -2.56 16 5 C 0.04 0.97 3.23 -90.39 -0.29 0.68 16 6 H 0.07 1.91 7.01 -51.93 -0.36 1.54 16 7 C -0.49 -12.61 5.64 -34.44 -0.19 -12.80 16 8 H 0.06 1.55 7.00 -52.49 -0.37 1.18 16 9 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 10 N -0.89 -25.07 12.65 55.43 0.70 -24.37 16 11 Si 0.88 21.65 29.54 -169.99 -5.02 16.63 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 15 C 0.10 1.96 2.44 -67.22 -0.16 1.80 16 16 H 0.04 0.74 7.92 -51.93 -0.41 0.32 16 17 C 0.04 0.82 3.85 -104.32 -0.40 0.41 16 18 C -0.12 -2.37 7.66 -39.44 -0.30 -2.67 16 19 C 0.07 1.36 11.18 -17.55 -0.20 1.17 16 20 N -0.50 -10.40 10.36 -13.26 -0.14 -10.53 16 21 C 0.08 1.57 11.18 -17.55 -0.20 1.38 16 22 C -0.17 -3.43 9.81 -39.44 -0.39 -3.82 16 23 H 0.02 0.29 7.97 -51.93 -0.41 -0.13 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.95 7.96 -51.93 -0.41 0.53 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.03 0.48 7.90 -51.93 -0.41 0.07 16 28 H 0.07 1.39 7.70 -51.93 -0.40 0.99 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.13 2.72 7.34 -52.49 -0.39 2.34 16 32 H 0.14 2.37 8.06 -52.49 -0.42 1.94 16 33 H 0.14 2.29 8.06 -52.49 -0.42 1.86 16 34 H 0.12 2.24 8.06 -52.48 -0.42 1.81 16 LS Contribution 279.14 15.07 4.21 4.21 Total: -1.00 -28.26 279.14 -7.98 -36.24 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -4.84 Total: 1.30 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -1.85 Total: -13.24 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: -0.48 Total: -45.14 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.26 -7.98 -36.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260101923.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.302 kcal (2) G-P(sol) polarization free energy of solvation -28.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds