Wall clock time and date at job start Mon Mar 30 2020 03:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48566 * 110.99675 * 2 1 4 4 C 1.54382 * 104.59281 * 159.03666 * 3 2 1 5 5 C 1.54261 * 105.06282 * 336.14760 * 4 3 2 6 6 H 1.08993 * 110.32347 * 241.10455 * 5 4 3 7 7 C 1.50696 * 110.32318 * 118.89451 * 5 4 3 8 8 H 1.07999 * 120.00211 * 309.43892 * 7 5 4 9 9 C 1.37880 * 120.00286 * 129.44923 * 7 5 4 10 10 N 1.31513 * 119.99463 * 359.97438 * 9 7 5 11 11 Si 1.86797 * 120.00485 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47170 * 89.99353 * 11 9 7 13 13 H 1.48498 * 109.47317 * 209.99821 * 11 9 7 14 14 H 1.48498 * 109.46778 * 329.99768 * 11 9 7 15 15 C 1.48561 * 111.00091 * 115.41513 * 2 1 3 16 16 H 1.09004 * 110.41326 * 319.86231 * 15 2 1 17 17 C 1.50703 * 110.41038 * 82.18151 * 15 2 1 18 18 C 1.38651 * 120.78676 * 33.97588 * 17 15 2 19 19 C 1.38204 * 119.16226 * 180.21812 * 18 17 15 20 20 N 1.31874 * 120.76053 * 359.47857 * 19 18 17 21 21 C 1.31866 * 121.72740 * 0.27439 * 20 19 18 22 22 C 1.38200 * 120.76469 * 359.97438 * 21 20 19 23 23 H 1.09000 * 109.47627 * 304.58092 * 1 2 3 24 24 H 1.09005 * 109.47034 * 64.58357 * 1 2 3 25 25 H 1.09004 * 109.47069 * 184.57986 * 1 2 3 26 26 H 1.08999 * 110.41097 * 277.81365 * 3 2 1 27 27 H 1.09004 * 110.41286 * 40.26090 * 3 2 1 28 28 H 1.09002 * 110.32072 * 95.04349 * 4 3 2 29 29 H 1.09002 * 110.32539 * 217.14541 * 4 3 2 30 30 H 0.97002 * 120.00068 * 180.02562 * 10 9 7 31 31 H 1.08000 * 120.42159 * 0.02562 * 18 17 15 32 32 H 1.07994 * 119.62020 * 179.75285 * 19 18 17 33 33 H 1.08001 * 119.61816 * 180.02562 * 21 20 19 34 34 H 1.08006 * 120.42210 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3870 0.0000 4 6 3.4432 1.2503 0.5345 5 6 3.4432 -0.0538 1.3586 6 1 3.6935 0.1556 2.3985 7 6 4.4180 -1.0428 0.7733 8 1 4.3867 -1.2722 -0.2816 9 6 5.3498 -1.6550 1.5845 10 7 5.3881 -1.3754 2.8690 11 14 6.5577 -2.8815 0.8592 12 1 7.7810 -2.1671 0.4137 13 1 6.9196 -3.8881 1.8892 14 1 5.9326 -3.5641 -0.3020 15 6 2.0014 -0.5952 1.2527 16 1 1.4085 -0.2729 2.1087 17 6 2.0104 -2.0992 1.1575 18 6 2.2547 -2.7324 -0.0515 19 6 2.2505 -4.1135 -0.1014 20 7 2.0280 -4.8270 0.9851 21 6 1.7970 -4.2589 2.1525 22 6 1.7807 -2.8827 2.2781 23 1 -0.3634 0.5832 0.8461 24 1 -0.3633 0.4411 -0.9282 25 1 -0.3633 -1.0244 0.0821 26 1 2.0078 1.7917 -1.0121 27 1 1.4097 2.0213 0.6602 28 1 4.1482 1.1750 -0.2934 29 1 3.6942 2.1006 1.1685 30 1 6.0439 -1.8057 3.4397 31 1 2.4428 -2.1536 -0.9437 32 1 2.4360 -4.6143 -1.0401 33 1 1.6193 -4.8763 3.0207 34 1 1.5905 -2.4233 3.2369 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260101923.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:10 Heat of formation + Delta-G solvation = 24.163605 kcal Electronic energy + Delta-G solvation = -16829.682216 eV Core-core repulsion = 14340.587779 eV Total energy + Delta-G solvation = -2489.094437 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.11758 -39.38201 -35.05688 -33.61774 -32.55198 -31.84258 -29.17804 -27.36192 -25.57432 -24.13315 -23.75051 -21.49618 -20.95950 -18.66716 -17.34421 -16.97591 -16.63598 -16.23847 -16.09247 -15.50198 -14.95693 -14.62296 -14.46852 -14.20805 -13.69291 -13.66465 -13.17816 -12.99725 -12.56509 -12.45656 -12.41098 -12.15749 -12.06204 -11.87985 -11.03251 -10.88165 -10.56296 -10.18815 -9.96441 -9.74559 -9.31539 -8.10857 -6.10301 0.51394 0.69587 1.33842 1.39220 1.45208 2.42332 3.10479 3.21140 3.25029 3.77714 4.02926 4.14496 4.17480 4.33990 4.41757 4.49826 4.54684 4.65008 4.72138 4.75934 4.90580 4.99177 5.02041 5.10939 5.14998 5.26250 5.35756 5.62130 5.68610 5.72765 5.80173 6.08550 6.12350 6.31875 6.48223 6.99991 7.24841 7.51802 8.98494 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.019119 B = 0.014584 C = 0.009945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.127503 B = 1919.409296 C = 2814.671368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.514 5.514 3 C 0.043 3.957 4 C -0.118 4.118 5 C 0.032 3.968 6 H 0.037 0.963 7 C -0.478 4.478 8 H 0.053 0.947 9 C 0.027 3.973 10 N -0.923 5.923 11 Si 0.920 3.080 12 H -0.275 1.275 13 H -0.296 1.296 14 H -0.268 1.268 15 C 0.104 3.896 16 H 0.036 0.964 17 C 0.024 3.976 18 C -0.124 4.124 19 C 0.064 3.936 20 N -0.518 5.518 21 C 0.077 3.923 22 C -0.184 4.184 23 H 0.029 0.971 24 H 0.084 0.916 25 H 0.057 0.943 26 H 0.090 0.910 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.256 0.744 31 H 0.132 0.868 32 H 0.164 0.836 33 H 0.168 0.832 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.823 1.924 -4.071 9.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.238 5.238 3 C -0.085 4.085 4 C -0.156 4.156 5 C 0.013 3.987 6 H 0.056 0.944 7 C -0.516 4.516 8 H 0.071 0.929 9 C -0.171 4.171 10 N -0.564 5.564 11 Si 0.747 3.253 12 H -0.201 1.201 13 H -0.222 1.222 14 H -0.192 1.192 15 C -0.005 4.005 16 H 0.054 0.946 17 C 0.016 3.984 18 C -0.144 4.144 19 C -0.091 4.091 20 N -0.228 5.228 21 C -0.079 4.079 22 C -0.204 4.204 23 H 0.047 0.953 24 H 0.103 0.897 25 H 0.076 0.924 26 H 0.108 0.892 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.150 0.850 32 H 0.182 0.818 33 H 0.185 0.815 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.567 0.677 -4.470 9.687 hybrid contribution 0.793 0.671 0.873 1.357 sum -7.774 1.348 -3.597 8.671 Atomic orbital electron populations 1.22518 0.87617 1.01473 1.01534 1.65173 1.08317 1.15712 1.34584 1.23060 0.94991 0.89166 1.01234 1.22472 0.96020 0.97729 0.99414 1.19628 0.90014 0.92510 0.96570 0.94429 1.21090 1.14081 1.22273 0.94169 0.92926 1.25392 0.98749 0.97885 0.95073 1.69967 1.36809 1.44701 1.04874 0.86113 0.80652 0.80007 0.78505 1.20107 1.22232 1.19224 1.21799 0.98193 0.90320 0.90151 0.94597 1.19857 0.90445 0.95234 0.92907 1.21835 0.98526 0.94943 0.99145 1.22921 0.97407 0.91574 0.97219 1.67555 1.13788 1.41649 0.99835 1.22793 0.96867 0.92569 0.95711 1.21997 1.03702 0.95499 0.99202 0.95275 0.89699 0.92402 0.89196 0.93502 0.92487 0.92825 0.93441 0.84972 0.81840 0.81534 0.85593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.44 127.69 1.21 1.67 16 2 N -0.51 -17.53 4.52 -886.99 -4.01 -21.54 16 3 C 0.04 1.35 6.49 86.45 0.56 1.91 16 4 C -0.12 -4.57 6.64 31.49 0.21 -4.36 16 5 C 0.03 1.50 3.23 -10.65 -0.03 1.46 16 6 H 0.04 2.00 7.01 -2.39 -0.02 1.98 16 7 C -0.48 -24.45 5.64 25.60 0.14 -24.31 16 8 H 0.05 2.73 7.00 -2.91 -0.02 2.71 16 9 C 0.03 1.48 5.46 84.66 0.46 1.94 16 10 N -0.92 -52.72 12.65 21.45 0.27 -52.44 16 11 Si 0.92 44.33 29.54 68.60 2.03 46.36 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 14 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 15 C 0.10 4.17 2.44 44.32 0.11 4.28 16 16 H 0.04 1.43 7.92 -2.39 -0.02 1.41 16 17 C 0.02 0.99 3.85 -19.67 -0.08 0.92 16 18 C -0.12 -4.97 7.66 22.36 0.17 -4.80 16 19 C 0.06 2.45 11.18 84.68 0.95 3.39 16 20 N -0.52 -20.54 10.36 -195.85 -2.03 -22.57 16 21 C 0.08 2.92 11.18 84.68 0.95 3.87 16 22 C -0.18 -7.30 9.81 22.36 0.22 -7.08 16 23 H 0.03 0.75 7.97 -2.39 -0.02 0.73 16 24 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 25 H 0.06 1.63 7.96 -2.38 -0.02 1.61 16 26 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.05 1.33 7.90 -2.39 -0.02 1.31 16 28 H 0.06 2.30 7.70 -2.39 -0.02 2.28 16 29 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 30 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 31 H 0.13 5.24 7.34 -2.91 -0.02 5.22 16 32 H 0.16 5.24 8.06 -2.91 -0.02 5.21 16 33 H 0.17 5.17 8.06 -2.91 -0.02 5.15 16 34 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -59.39 279.14 2.19 -57.20 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 1.07 Total: 14.10 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 4.86 Total: -21.10 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -5.77 Total: -96.56 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -59.39 2.19 -57.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260101923.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.359 kcal (2) G-P(sol) polarization free energy of solvation -59.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds