Wall clock time and date at job start Mon Mar 30 2020 03:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48805 * 111.18748 * 2 1 4 4 C 1.54936 * 103.34937 * 200.49535 * 3 2 1 5 5 C 1.54594 * 102.92097 * 37.30834 * 4 3 2 6 6 H 1.09003 * 110.31011 * 219.12431 * 5 4 3 7 7 C 1.50709 * 110.39122 * 97.00260 * 5 4 3 8 8 H 1.08001 * 119.99888 * 244.23068 * 7 5 4 9 9 C 1.37876 * 120.00009 * 64.23305 * 7 5 4 10 10 N 1.31514 * 119.99750 * 0.02562 * 9 7 5 11 11 Si 1.86793 * 120.00121 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.47191 * 59.99831 * 11 9 7 13 13 H 1.48496 * 109.47368 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47135 * 300.00392 * 11 9 7 15 15 C 1.47907 * 110.99805 * 242.66302 * 2 1 3 16 16 H 1.08997 * 109.91421 * 26.29286 * 15 2 1 17 17 C 1.50706 * 109.91483 * 265.19600 * 15 2 1 18 18 C 1.38640 * 120.79101 * 321.52675 * 17 15 2 19 19 C 1.38211 * 119.16250 * 179.75919 * 18 17 15 20 20 N 1.31874 * 120.76138 * 0.52692 * 19 18 17 21 21 C 1.31867 * 121.72181 * 359.74240 * 20 19 18 22 22 C 1.38204 * 120.76954 * 359.97438 * 21 20 19 23 23 H 1.09004 * 109.47102 * 177.33753 * 1 2 3 24 24 H 1.09000 * 109.47313 * 297.33363 * 1 2 3 25 25 H 1.08998 * 109.47273 * 57.33850 * 1 2 3 26 26 H 1.09002 * 110.69892 * 81.97244 * 3 2 1 27 27 H 1.09001 * 110.51818 * 318.92981 * 3 2 1 28 28 H 1.08998 * 110.72309 * 278.94988 * 4 3 2 29 29 H 1.09003 * 110.72433 * 155.66504 * 4 3 2 30 30 H 0.97012 * 119.99763 * 180.02562 * 10 9 7 31 31 H 1.08003 * 120.42416 * 359.97438 * 18 17 15 32 32 H 1.08000 * 119.62220 * 180.29421 * 19 18 17 33 33 H 1.08011 * 119.61124 * 179.97438 * 21 20 19 34 34 H 1.07997 * 120.41927 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0068 1.3875 0.0000 4 6 3.4527 1.2107 -0.5278 5 6 3.2974 0.1058 -1.5979 6 1 4.1458 -0.5776 -1.5621 7 6 3.1769 0.7171 -2.9702 8 1 2.2651 0.5973 -3.5366 9 6 4.2306 1.4293 -3.5026 10 7 5.3410 1.5748 -2.8131 11 14 4.0816 2.1864 -5.2037 12 1 2.9525 3.1509 -5.2191 13 1 5.3419 2.8950 -5.5423 14 1 3.8315 1.1157 -6.2018 15 6 1.9990 -0.6341 -1.2266 16 1 1.2743 -0.5412 -2.0355 17 6 2.2937 -2.0890 -0.9662 18 6 2.8325 -2.4984 0.2438 19 6 3.0849 -3.8417 0.4486 20 7 2.8287 -4.7275 -0.4942 21 6 2.3214 -4.3735 -1.6588 22 6 2.0377 -3.0490 -1.9332 23 1 -0.3633 -1.0266 -0.0477 24 1 -0.3634 0.4719 0.9129 25 1 -0.3634 0.5546 -0.8651 26 1 2.0133 1.7982 1.0097 27 1 1.4273 2.0219 -0.6707 28 1 4.1176 0.8829 0.2713 29 1 3.8149 2.1351 -0.9776 30 1 6.0823 2.0762 -3.1875 31 1 3.0492 -1.7771 1.0180 32 1 3.5001 -4.1694 1.3902 33 1 2.1254 -5.1275 -2.4069 34 1 1.6219 -2.7655 -2.8887 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260101944.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:12 Heat of formation + Delta-G solvation = 36.138404 kcal Electronic energy + Delta-G solvation = -16378.674513 eV Core-core repulsion = 13890.099342 eV Total energy + Delta-G solvation = -2488.575171 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.82406 -37.96925 -33.23689 -32.43419 -30.67898 -30.57603 -27.85207 -25.74032 -23.82614 -22.97747 -22.27675 -20.13330 -19.32652 -16.70949 -16.14804 -15.64826 -15.06228 -14.83355 -14.28665 -14.17438 -13.56020 -13.29594 -13.04707 -12.76874 -12.40548 -12.17033 -11.27676 -11.09133 -11.02261 -10.87774 -10.71666 -10.57575 -10.35662 -10.08350 -9.85949 -9.04820 -8.94499 -8.67798 -8.61093 -8.44725 -7.88791 -6.10911 -4.16716 1.65250 1.83299 3.24861 3.30589 3.32270 4.31286 4.33311 4.61999 4.88446 5.18634 5.32530 5.41665 5.58747 5.68978 5.72776 5.76511 5.88518 6.11279 6.12096 6.13289 6.18225 6.30763 6.38370 6.50276 6.63796 6.92602 7.00736 7.09348 7.23496 7.48610 7.54090 7.67803 7.75687 7.84317 8.31299 8.41721 8.84637 9.47870 10.97122 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.023935 B = 0.009004 C = 0.007684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.576947 B = 3108.850153 C = 3643.055279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.521 5.521 3 C 0.038 3.962 4 C -0.100 4.100 5 C 0.058 3.942 6 H 0.037 0.963 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.065 3.935 10 N -0.884 5.884 11 Si 0.890 3.110 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.100 3.900 16 H 0.059 0.941 17 C -0.002 4.002 18 C -0.143 4.143 19 C 0.082 3.918 20 N -0.502 5.502 21 C 0.087 3.913 22 C -0.171 4.171 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.025 0.975 26 H 0.063 0.937 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.262 0.738 31 H 0.137 0.863 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.521 -4.214 4.496 8.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.245 5.245 3 C -0.089 4.089 4 C -0.139 4.139 5 C 0.039 3.961 6 H 0.055 0.945 7 C -0.556 4.556 8 H 0.072 0.928 9 C -0.137 4.137 10 N -0.522 5.522 11 Si 0.718 3.282 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.202 1.202 15 C -0.008 4.008 16 H 0.077 0.923 17 C -0.011 4.011 18 C -0.163 4.163 19 C -0.074 4.074 20 N -0.211 5.211 21 C -0.070 4.070 22 C -0.192 4.192 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.043 0.957 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.155 0.845 32 H 0.165 0.835 33 H 0.164 0.836 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.008 -5.288 5.117 9.500 hybrid contribution -0.523 1.824 -1.893 2.681 sum -6.531 -3.464 3.223 8.065 Atomic orbital electron populations 1.22431 0.89364 1.00955 1.00176 1.64590 1.06689 1.16075 1.37122 1.23271 0.97929 0.88525 0.99159 1.22434 0.92121 1.02155 0.97167 1.19467 0.90034 0.92423 0.94195 0.94505 1.21121 1.00261 1.33840 1.00417 0.92800 1.24944 0.95211 0.96164 0.97408 1.69960 1.04140 1.40679 1.37389 0.86689 0.77385 0.79460 0.84692 1.20292 1.21174 1.20199 1.21709 0.99864 0.89156 0.90071 0.92331 1.20414 0.92248 0.95727 0.92678 1.21980 0.99251 0.96727 0.98380 1.22645 0.97269 0.89784 0.97698 1.67566 1.12726 1.38941 1.01899 1.22534 0.95792 0.94564 0.94105 1.22023 1.02798 0.93927 1.00412 0.92357 0.92053 0.95663 0.91830 0.94096 0.94099 0.89996 0.92780 0.84497 0.83546 0.83552 0.85297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.41 60.06 0.57 0.87 16 2 N -0.52 -9.55 4.49 -231.92 -1.04 -10.59 16 3 C 0.04 0.73 6.58 -1.75 -0.01 0.72 16 4 C -0.10 -2.25 6.17 -24.87 -0.15 -2.40 16 5 C 0.06 1.39 2.49 -90.41 -0.23 1.16 16 6 H 0.04 0.99 7.68 -51.93 -0.40 0.59 16 7 C -0.52 -13.58 8.49 -34.44 -0.29 -13.87 16 8 H 0.05 1.40 7.34 -52.49 -0.39 1.01 16 9 C 0.07 1.74 5.10 -17.82 -0.09 1.65 16 10 N -0.88 -24.58 12.15 55.43 0.67 -23.91 16 11 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 C 0.10 2.03 2.35 -67.79 -0.16 1.87 16 16 H 0.06 1.23 6.89 -51.93 -0.36 0.87 16 17 C 0.00 -0.04 4.77 -104.32 -0.50 -0.54 16 18 C -0.14 -2.53 9.43 -39.44 -0.37 -2.90 16 19 C 0.08 1.34 11.18 -17.54 -0.20 1.15 16 20 N -0.50 -8.65 10.36 -13.25 -0.14 -8.79 16 21 C 0.09 1.41 11.18 -17.55 -0.20 1.21 16 22 C -0.17 -2.98 9.79 -39.44 -0.39 -3.37 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.02 0.39 8.01 -51.93 -0.42 -0.02 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.04 0.80 7.97 -51.93 -0.41 0.38 16 28 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.08 2.04 6.78 -51.93 -0.35 1.69 16 30 H 0.26 7.01 8.31 -40.81 -0.34 6.67 16 31 H 0.14 2.37 7.77 -52.48 -0.41 1.96 16 32 H 0.15 1.94 8.06 -52.49 -0.42 1.51 16 33 H 0.15 1.91 8.06 -52.48 -0.42 1.49 16 34 H 0.13 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 282.31 15.07 4.25 4.25 Total: -1.00 -28.10 282.31 -8.11 -36.22 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -4.83 Total: 1.61 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -2.02 Total: -14.44 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -0.51 Total: -43.29 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.10 -8.11 -36.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260101944.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.354 kcal (2) G-P(sol) polarization free energy of solvation -28.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds