Wall clock time and date at job start Mon Mar 30 2020 03:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48805 * 111.18748 * 2 1 4 4 C 1.54936 * 103.34937 * 200.49535 * 3 2 1 5 5 C 1.54594 * 102.92097 * 37.30834 * 4 3 2 6 6 H 1.09003 * 110.31011 * 219.12431 * 5 4 3 7 7 C 1.50709 * 110.39122 * 97.00260 * 5 4 3 8 8 H 1.08001 * 119.99888 * 244.23068 * 7 5 4 9 9 C 1.37876 * 120.00009 * 64.23305 * 7 5 4 10 10 N 1.31514 * 119.99750 * 0.02562 * 9 7 5 11 11 Si 1.86793 * 120.00121 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.47191 * 59.99831 * 11 9 7 13 13 H 1.48496 * 109.47368 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47135 * 300.00392 * 11 9 7 15 15 C 1.47907 * 110.99805 * 242.66302 * 2 1 3 16 16 H 1.08997 * 109.91421 * 26.29286 * 15 2 1 17 17 C 1.50706 * 109.91483 * 265.19600 * 15 2 1 18 18 C 1.38640 * 120.79101 * 321.52675 * 17 15 2 19 19 C 1.38211 * 119.16250 * 179.75919 * 18 17 15 20 20 N 1.31874 * 120.76138 * 0.52692 * 19 18 17 21 21 C 1.31867 * 121.72181 * 359.74240 * 20 19 18 22 22 C 1.38204 * 120.76954 * 359.97438 * 21 20 19 23 23 H 1.09004 * 109.47102 * 177.33753 * 1 2 3 24 24 H 1.09000 * 109.47313 * 297.33363 * 1 2 3 25 25 H 1.08998 * 109.47273 * 57.33850 * 1 2 3 26 26 H 1.09002 * 110.69892 * 81.97244 * 3 2 1 27 27 H 1.09001 * 110.51818 * 318.92981 * 3 2 1 28 28 H 1.08998 * 110.72309 * 278.94988 * 4 3 2 29 29 H 1.09003 * 110.72433 * 155.66504 * 4 3 2 30 30 H 0.97012 * 119.99763 * 180.02562 * 10 9 7 31 31 H 1.08003 * 120.42416 * 359.97438 * 18 17 15 32 32 H 1.08000 * 119.62220 * 180.29421 * 19 18 17 33 33 H 1.08011 * 119.61124 * 179.97438 * 21 20 19 34 34 H 1.07997 * 120.41927 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0068 1.3875 0.0000 4 6 3.4527 1.2107 -0.5278 5 6 3.2974 0.1058 -1.5979 6 1 4.1458 -0.5776 -1.5621 7 6 3.1769 0.7171 -2.9702 8 1 2.2651 0.5973 -3.5366 9 6 4.2306 1.4293 -3.5026 10 7 5.3410 1.5748 -2.8131 11 14 4.0816 2.1864 -5.2037 12 1 2.9525 3.1509 -5.2191 13 1 5.3419 2.8950 -5.5423 14 1 3.8315 1.1157 -6.2018 15 6 1.9990 -0.6341 -1.2266 16 1 1.2743 -0.5412 -2.0355 17 6 2.2937 -2.0890 -0.9662 18 6 2.8325 -2.4984 0.2438 19 6 3.0849 -3.8417 0.4486 20 7 2.8287 -4.7275 -0.4942 21 6 2.3214 -4.3735 -1.6588 22 6 2.0377 -3.0490 -1.9332 23 1 -0.3633 -1.0266 -0.0477 24 1 -0.3634 0.4719 0.9129 25 1 -0.3634 0.5546 -0.8651 26 1 2.0133 1.7982 1.0097 27 1 1.4273 2.0219 -0.6707 28 1 4.1176 0.8829 0.2713 29 1 3.8149 2.1351 -0.9776 30 1 6.0823 2.0762 -3.1875 31 1 3.0492 -1.7771 1.0180 32 1 3.5001 -4.1694 1.3902 33 1 2.1254 -5.1275 -2.4069 34 1 1.6219 -2.7655 -2.8887 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260101944.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:12 Heat of formation + Delta-G solvation = 19.310470 kcal Electronic energy + Delta-G solvation = -16379.404227 eV Core-core repulsion = 13890.099342 eV Total energy + Delta-G solvation = -2489.304885 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.22162 -39.50063 -35.14292 -33.84446 -32.33580 -31.97996 -29.50495 -27.41146 -25.49345 -24.31849 -23.72875 -21.80036 -20.95972 -18.53685 -17.66703 -17.08880 -16.73604 -16.36627 -15.83774 -15.71807 -14.98436 -14.65004 -14.44416 -14.32026 -14.09637 -13.77097 -12.91221 -12.81964 -12.64713 -12.49978 -12.29341 -12.16566 -12.11738 -11.88803 -11.62534 -10.92719 -10.48610 -10.35898 -10.16065 -9.94285 -9.37471 -8.15940 -6.27887 0.34141 0.44685 1.39745 1.40249 1.47783 2.39197 2.96542 3.14223 3.16425 3.68487 3.90255 4.06722 4.15634 4.25362 4.36873 4.38915 4.47448 4.56213 4.68328 4.74529 4.83483 4.90556 4.96917 5.02694 5.11699 5.28201 5.35048 5.52895 5.58525 5.77284 5.80489 5.91847 5.94656 6.23758 6.34483 6.81143 7.11065 7.39936 8.91568 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.023935 B = 0.009004 C = 0.007684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.576947 B = 3108.850153 C = 3643.055279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.519 5.519 3 C 0.049 3.951 4 C -0.097 4.097 5 C 0.056 3.944 6 H -0.003 1.003 7 C -0.531 4.531 8 H 0.052 0.948 9 C 0.018 3.982 10 N -0.914 5.914 11 Si 0.950 3.050 12 H -0.270 1.270 13 H -0.285 1.285 14 H -0.272 1.272 15 C 0.112 3.888 16 H 0.047 0.953 17 C -0.024 4.024 18 C -0.152 4.152 19 C 0.085 3.915 20 N -0.513 5.513 21 C 0.090 3.910 22 C -0.182 4.182 23 H 0.065 0.935 24 H 0.086 0.914 25 H 0.023 0.977 26 H 0.091 0.909 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.052 0.948 30 H 0.262 0.738 31 H 0.137 0.863 32 H 0.178 0.822 33 H 0.179 0.821 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.746 -4.830 4.756 10.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.242 5.242 3 C -0.079 4.079 4 C -0.135 4.135 5 C 0.036 3.964 6 H 0.015 0.985 7 C -0.569 4.569 8 H 0.070 0.930 9 C -0.182 4.182 10 N -0.552 5.552 11 Si 0.776 3.224 12 H -0.195 1.195 13 H -0.210 1.210 14 H -0.197 1.197 15 C 0.004 3.996 16 H 0.065 0.935 17 C -0.032 4.032 18 C -0.172 4.172 19 C -0.071 4.071 20 N -0.223 5.223 21 C -0.066 4.066 22 C -0.203 4.203 23 H 0.084 0.916 24 H 0.104 0.896 25 H 0.041 0.959 26 H 0.109 0.891 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.155 0.845 32 H 0.195 0.805 33 H 0.196 0.804 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.253 -5.908 5.380 10.791 hybrid contribution -0.131 1.968 -1.954 2.777 sum -7.384 -3.940 3.426 9.043 Atomic orbital electron populations 1.22510 0.87179 1.01787 1.01348 1.64635 1.08668 1.15186 1.35750 1.23181 0.95230 0.89117 1.00339 1.22256 0.94533 1.00164 0.96589 1.19346 0.90614 0.92412 0.93990 0.98491 1.21439 1.00146 1.33717 1.01555 0.92987 1.25681 0.94956 0.96695 1.00848 1.70084 1.04756 1.41477 1.38917 0.85735 0.77446 0.78750 0.80517 1.19518 1.21016 1.19723 1.21402 0.97582 0.90072 0.90589 0.93475 1.20441 0.93732 0.95152 0.93924 1.22044 0.99575 0.97524 0.98027 1.23104 0.96211 0.89084 0.98653 1.67674 1.13056 1.39185 1.02389 1.23023 0.94450 0.94738 0.94433 1.22202 1.03189 0.94409 1.00474 0.91606 0.89570 0.95852 0.89059 0.94591 0.94371 0.92944 0.92922 0.84522 0.80485 0.80378 0.84599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.41 127.69 1.20 1.78 16 2 N -0.52 -18.37 4.49 -887.67 -3.99 -22.36 16 3 C 0.05 1.80 6.58 86.60 0.57 2.37 16 4 C -0.10 -4.43 6.17 31.80 0.20 -4.24 16 5 C 0.06 2.73 2.49 -10.66 -0.03 2.71 16 6 H 0.00 -0.17 7.68 -2.39 -0.02 -0.19 16 7 C -0.53 -28.34 8.49 25.60 0.22 -28.13 16 8 H 0.05 2.73 7.34 -2.91 -0.02 2.71 16 9 C 0.02 0.97 5.10 84.65 0.43 1.40 16 10 N -0.91 -52.13 12.15 21.45 0.26 -51.87 16 11 Si 0.95 42.68 29.54 68.60 2.03 44.70 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 13 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 15 C 0.11 4.54 2.35 44.31 0.10 4.65 16 16 H 0.05 1.99 6.89 -2.39 -0.02 1.97 16 17 C -0.02 -0.89 4.77 -19.67 -0.09 -0.99 16 18 C -0.15 -5.22 9.43 22.36 0.21 -5.01 16 19 C 0.09 2.63 11.18 84.68 0.95 3.58 16 20 N -0.51 -16.63 10.36 -195.83 -2.03 -18.66 16 21 C 0.09 2.74 11.18 84.68 0.95 3.69 16 22 C -0.18 -6.20 9.79 22.36 0.22 -5.98 16 23 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 24 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.02 0.68 8.01 -2.39 -0.02 0.66 16 26 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 27 H 0.04 1.36 7.97 -2.39 -0.02 1.35 16 28 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.05 2.69 6.78 -2.39 -0.02 2.67 16 30 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 31 H 0.14 4.63 7.77 -2.91 -0.02 4.61 16 32 H 0.18 4.21 8.06 -2.91 -0.02 4.19 16 33 H 0.18 4.15 8.06 -2.90 -0.02 4.12 16 34 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -60.53 282.31 2.26 -58.27 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 1.07 Total: 14.08 kcal Atomic # 6 Polarization: -29.08 SS G_CDS: 4.92 Total: -24.16 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -5.76 Total: -92.90 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -60.53 2.26 -58.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260101944.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.584 kcal (2) G-P(sol) polarization free energy of solvation -60.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds