Wall clock time and date at job start Mon Mar 30 2020 03:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48559 * 111.00232 * 2 1 4 4 C 1.54377 * 104.70238 * 200.89958 * 3 2 1 5 5 C 1.54570 * 104.91112 * 23.87647 * 4 3 2 6 6 H 1.08999 * 110.31937 * 118.89307 * 5 4 3 7 7 C 1.50701 * 110.38771 * 241.04300 * 5 4 3 8 8 H 1.07996 * 120.00141 * 51.38364 * 7 5 4 9 9 C 1.37880 * 119.99644 * 231.38316 * 7 5 4 10 10 N 1.31515 * 119.99967 * 0.02562 * 9 7 5 11 11 Si 1.86802 * 119.99802 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46949 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47055 * 120.00199 * 11 9 7 14 14 H 1.48494 * 109.47204 * 240.00011 * 11 9 7 15 15 C 1.48558 * 111.00368 * 244.57800 * 2 1 3 16 16 H 1.08999 * 110.41206 * 40.26240 * 15 2 1 17 17 C 1.50700 * 110.41150 * 277.93973 * 15 2 1 18 18 C 1.38650 * 120.79217 * 325.11422 * 17 15 2 19 19 C 1.38200 * 119.16607 * 179.75562 * 18 17 15 20 20 N 1.31872 * 120.76169 * 0.53620 * 19 18 17 21 21 C 1.31874 * 121.72750 * 359.73429 * 20 19 18 22 22 C 1.38205 * 120.76011 * 359.97438 * 21 20 19 23 23 H 1.09006 * 109.46683 * 60.13084 * 1 2 3 24 24 H 1.08998 * 109.47067 * 180.12574 * 1 2 3 25 25 H 1.08996 * 109.47283 * 300.12685 * 1 2 3 26 26 H 1.09002 * 110.41166 * 319.73667 * 3 2 1 27 27 H 1.09003 * 110.41355 * 82.05958 * 3 2 1 28 28 H 1.08994 * 110.32811 * 142.80695 * 4 3 2 29 29 H 1.09001 * 110.32115 * 265.01771 * 4 3 2 30 30 H 0.97004 * 119.99637 * 179.97438 * 10 9 7 31 31 H 1.08005 * 120.41698 * 359.97438 * 18 17 15 32 32 H 1.08003 * 119.62255 * 180.24956 * 19 18 17 33 33 H 1.07995 * 119.61663 * 180.02562 * 21 20 19 34 34 H 1.07995 * 120.41447 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4442 1.2527 -0.5327 5 6 3.4434 -0.0540 -1.3584 6 1 3.6937 0.1553 -2.3984 7 6 4.4183 -1.0441 -0.7752 8 1 4.3797 -1.2843 0.2770 9 6 5.3596 -1.6434 -1.5850 10 7 5.4070 -1.3505 -2.8663 11 14 6.5686 -2.8702 -0.8620 12 1 6.3080 -3.0240 0.5918 13 1 6.4037 -4.1834 -1.5356 14 1 7.9548 -2.3791 -1.0677 15 6 2.0015 -0.5954 -1.2526 16 1 1.4100 -0.2714 -2.1089 17 6 2.0077 -2.0994 -1.1584 18 6 2.2684 -2.7340 0.0465 19 6 2.2606 -4.1151 0.0957 20 7 2.0196 -4.8273 -0.9877 21 6 1.7732 -4.2579 -2.1513 22 6 1.7585 -2.8816 -2.2758 23 1 -0.3633 0.5118 -0.8912 24 1 -0.3633 -1.0276 0.0023 25 1 -0.3633 0.5158 0.8888 26 1 1.4099 2.0212 -0.6603 27 1 2.0059 1.7924 1.0118 28 1 3.6943 2.1032 -1.1668 29 1 4.1482 1.1773 0.2961 30 1 6.0695 -1.7718 -3.4359 31 1 2.4714 -2.1563 0.9361 32 1 2.4587 -4.6171 1.0313 33 1 1.5798 -4.8742 -3.0168 34 1 1.5556 -2.4211 -3.2313 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260101965.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:14 Heat of formation + Delta-G solvation = 40.909370 kcal Electronic energy + Delta-G solvation = -16820.125384 eV Core-core repulsion = 14331.757098 eV Total energy + Delta-G solvation = -2488.368286 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.55935 -37.84914 -33.21167 -32.03114 -30.87925 -30.30113 -27.57448 -25.70087 -23.96259 -22.55865 -22.19353 -20.00723 -19.26787 -16.83479 -15.74400 -15.32589 -14.94095 -14.69674 -14.34550 -14.05406 -13.49963 -13.05720 -12.81562 -12.72341 -12.21907 -11.83240 -11.58338 -11.22033 -11.00902 -10.84369 -10.62372 -10.55361 -10.45562 -10.20903 -9.20772 -9.00024 -8.62827 -8.50033 -8.36099 -8.18108 -7.91735 -6.06060 -4.04059 2.06503 2.27747 3.29985 3.40030 3.42690 4.43275 4.56604 4.75512 5.21467 5.23609 5.50659 5.60674 5.65279 5.67167 5.79988 5.90052 6.05459 6.10390 6.13997 6.18701 6.24781 6.41433 6.54231 6.66771 6.79021 6.81980 6.94319 7.20266 7.29925 7.43094 7.63836 7.71704 7.79652 7.90437 8.40491 8.79913 9.02983 9.57791 11.03462 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.019025 B = 0.014586 C = 0.009916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.382818 B = 1919.231193 C = 2823.013312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.505 5.505 3 C 0.035 3.965 4 C -0.120 4.120 5 C 0.041 3.959 6 H 0.073 0.927 7 C -0.491 4.491 8 H 0.060 0.940 9 C 0.070 3.930 10 N -0.893 5.893 11 Si 0.880 3.120 12 H -0.270 1.270 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.096 3.904 16 H 0.037 0.963 17 C 0.038 3.962 18 C -0.115 4.115 19 C 0.067 3.933 20 N -0.504 5.504 21 C 0.081 3.919 22 C -0.170 4.170 23 H 0.020 0.980 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.029 0.971 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.260 0.740 31 H 0.134 0.866 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.771 1.717 3.013 8.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.228 5.228 3 C -0.093 4.093 4 C -0.158 4.158 5 C 0.022 3.978 6 H 0.092 0.908 7 C -0.529 4.529 8 H 0.078 0.922 9 C -0.132 4.132 10 N -0.531 5.531 11 Si 0.708 3.292 12 H -0.194 1.194 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.013 4.013 16 H 0.054 0.946 17 C 0.030 3.970 18 C -0.135 4.135 19 C -0.088 4.088 20 N -0.214 5.214 21 C -0.077 4.077 22 C -0.191 4.191 23 H 0.038 0.962 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.048 0.952 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.152 0.848 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.505 0.470 3.396 8.251 hybrid contribution 0.498 0.699 -0.576 1.034 sum -7.007 1.169 2.820 7.644 Atomic orbital electron populations 1.22479 0.89778 1.01425 0.99722 1.65187 1.06248 1.15199 1.36209 1.23059 0.97145 0.89314 0.99752 1.22641 0.93836 0.99255 1.00111 1.19751 0.88637 0.91165 0.98288 0.90850 1.20989 1.13985 1.22850 0.95097 0.92181 1.24908 0.97216 0.96299 0.94787 1.69873 1.35583 1.43355 1.04286 0.86700 0.81150 0.81588 0.79812 1.19431 1.20979 1.21099 1.22077 1.00048 0.90298 0.88834 0.94553 1.19666 0.90084 0.94868 0.92405 1.21807 0.97802 0.94519 0.99344 1.22499 0.98367 0.91602 0.96340 1.67471 1.13096 1.41368 0.99453 1.22325 0.97918 0.92374 0.95049 1.21786 1.03392 0.94958 0.98954 0.96173 0.91941 0.92108 0.95227 0.91426 0.93494 0.91449 0.93007 0.84817 0.84283 0.84294 0.86310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.41 60.06 0.57 0.79 16 2 N -0.50 -9.18 4.55 -231.72 -1.06 -10.23 16 3 C 0.04 0.60 6.48 -2.18 -0.01 0.59 16 4 C -0.12 -2.39 6.66 -25.19 -0.17 -2.56 16 5 C 0.04 0.95 3.24 -90.22 -0.29 0.66 16 6 H 0.07 1.92 7.00 -51.93 -0.36 1.55 16 7 C -0.49 -12.59 5.66 -34.44 -0.19 -12.79 16 8 H 0.06 1.58 6.89 -52.49 -0.36 1.21 16 9 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 10 N -0.89 -25.11 12.64 55.43 0.70 -24.40 16 11 Si 0.88 21.64 29.54 -169.99 -5.02 16.62 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 C 0.10 1.96 2.43 -67.22 -0.16 1.80 16 16 H 0.04 0.74 7.85 -51.93 -0.41 0.33 16 17 C 0.04 0.80 3.94 -104.32 -0.41 0.39 16 18 C -0.11 -2.35 7.62 -39.44 -0.30 -2.65 16 19 C 0.07 1.33 11.18 -17.55 -0.20 1.14 16 20 N -0.50 -10.36 10.36 -13.25 -0.14 -10.50 16 21 C 0.08 1.57 11.18 -17.55 -0.20 1.38 16 22 C -0.17 -3.44 9.81 -39.44 -0.39 -3.82 16 23 H 0.02 0.29 7.97 -51.93 -0.41 -0.12 16 24 H 0.06 0.95 8.04 -51.93 -0.42 0.53 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.03 0.47 7.97 -51.93 -0.41 0.06 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 1.39 7.71 -51.93 -0.40 0.99 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.13 2.73 7.29 -52.48 -0.38 2.34 16 32 H 0.14 2.35 8.06 -52.48 -0.42 1.93 16 33 H 0.14 2.28 8.06 -52.49 -0.42 1.86 16 34 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 279.14 15.07 4.21 4.21 Total: -1.00 -28.36 279.14 -7.99 -36.35 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -4.83 Total: 1.25 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -1.86 Total: -13.29 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: -0.49 Total: -45.14 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.36 -7.99 -36.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260101965.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.259 kcal (2) G-P(sol) polarization free energy of solvation -28.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds