Wall clock time and date at job start Mon Mar 30 2020 03:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48559 * 111.00232 * 2 1 4 4 C 1.54377 * 104.70238 * 200.89958 * 3 2 1 5 5 C 1.54570 * 104.91112 * 23.87647 * 4 3 2 6 6 H 1.08999 * 110.31937 * 118.89307 * 5 4 3 7 7 C 1.50701 * 110.38771 * 241.04300 * 5 4 3 8 8 H 1.07996 * 120.00141 * 51.38364 * 7 5 4 9 9 C 1.37880 * 119.99644 * 231.38316 * 7 5 4 10 10 N 1.31515 * 119.99967 * 0.02562 * 9 7 5 11 11 Si 1.86802 * 119.99802 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46949 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47055 * 120.00199 * 11 9 7 14 14 H 1.48494 * 109.47204 * 240.00011 * 11 9 7 15 15 C 1.48558 * 111.00368 * 244.57800 * 2 1 3 16 16 H 1.08999 * 110.41206 * 40.26240 * 15 2 1 17 17 C 1.50700 * 110.41150 * 277.93973 * 15 2 1 18 18 C 1.38650 * 120.79217 * 325.11422 * 17 15 2 19 19 C 1.38200 * 119.16607 * 179.75562 * 18 17 15 20 20 N 1.31872 * 120.76169 * 0.53620 * 19 18 17 21 21 C 1.31874 * 121.72750 * 359.73429 * 20 19 18 22 22 C 1.38205 * 120.76011 * 359.97438 * 21 20 19 23 23 H 1.09006 * 109.46683 * 60.13084 * 1 2 3 24 24 H 1.08998 * 109.47067 * 180.12574 * 1 2 3 25 25 H 1.08996 * 109.47283 * 300.12685 * 1 2 3 26 26 H 1.09002 * 110.41166 * 319.73667 * 3 2 1 27 27 H 1.09003 * 110.41355 * 82.05958 * 3 2 1 28 28 H 1.08994 * 110.32811 * 142.80695 * 4 3 2 29 29 H 1.09001 * 110.32115 * 265.01771 * 4 3 2 30 30 H 0.97004 * 119.99637 * 179.97438 * 10 9 7 31 31 H 1.08005 * 120.41698 * 359.97438 * 18 17 15 32 32 H 1.08003 * 119.62255 * 180.24956 * 19 18 17 33 33 H 1.07995 * 119.61663 * 180.02562 * 21 20 19 34 34 H 1.07995 * 120.41447 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4442 1.2527 -0.5327 5 6 3.4434 -0.0540 -1.3584 6 1 3.6937 0.1553 -2.3984 7 6 4.4183 -1.0441 -0.7752 8 1 4.3797 -1.2843 0.2770 9 6 5.3596 -1.6434 -1.5850 10 7 5.4070 -1.3505 -2.8663 11 14 6.5686 -2.8702 -0.8620 12 1 6.3080 -3.0240 0.5918 13 1 6.4037 -4.1834 -1.5356 14 1 7.9548 -2.3791 -1.0677 15 6 2.0015 -0.5954 -1.2526 16 1 1.4100 -0.2714 -2.1089 17 6 2.0077 -2.0994 -1.1584 18 6 2.2684 -2.7340 0.0465 19 6 2.2606 -4.1151 0.0957 20 7 2.0196 -4.8273 -0.9877 21 6 1.7732 -4.2579 -2.1513 22 6 1.7585 -2.8816 -2.2758 23 1 -0.3633 0.5118 -0.8912 24 1 -0.3633 -1.0276 0.0023 25 1 -0.3633 0.5158 0.8888 26 1 1.4099 2.0212 -0.6603 27 1 2.0059 1.7924 1.0118 28 1 3.6943 2.1032 -1.1668 29 1 4.1482 1.1773 0.2961 30 1 6.0695 -1.7718 -3.4359 31 1 2.4714 -2.1563 0.9361 32 1 2.4587 -4.6171 1.0313 33 1 1.5798 -4.8742 -3.0168 34 1 1.5556 -2.4211 -3.2313 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260101965.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:13 Heat of formation + Delta-G solvation = 23.888483 kcal Electronic energy + Delta-G solvation = -16820.863465 eV Core-core repulsion = 14331.757098 eV Total energy + Delta-G solvation = -2489.106367 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.11686 -39.37637 -35.05784 -33.62213 -32.54052 -31.84887 -29.18431 -27.36660 -25.57485 -24.13472 -23.75336 -21.50129 -20.96450 -18.67346 -17.34582 -16.98263 -16.63537 -16.24133 -16.08943 -15.49769 -14.96363 -14.62625 -14.47342 -14.21290 -13.69493 -13.65719 -13.17807 -13.03396 -12.54948 -12.45975 -12.39509 -12.16672 -12.06381 -11.87860 -11.02888 -10.87217 -10.58053 -10.19018 -9.97243 -9.74810 -9.31696 -8.11382 -6.10659 0.50824 0.68984 1.32579 1.39311 1.45653 2.41922 3.09982 3.20820 3.25035 3.77559 4.02478 4.14650 4.16964 4.33818 4.41614 4.49783 4.54299 4.64607 4.71410 4.75892 4.90530 4.98983 5.02003 5.10851 5.14434 5.25951 5.35387 5.62175 5.67977 5.72598 5.80147 6.08165 6.12147 6.31734 6.47867 7.00136 7.24513 7.51445 8.98258 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.019025 B = 0.014586 C = 0.009916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.382818 B = 1919.231193 C = 2823.013312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.514 5.514 3 C 0.043 3.957 4 C -0.118 4.118 5 C 0.031 3.969 6 H 0.037 0.963 7 C -0.477 4.477 8 H 0.054 0.946 9 C 0.026 3.974 10 N -0.924 5.924 11 Si 0.920 3.080 12 H -0.262 1.262 13 H -0.295 1.295 14 H -0.282 1.282 15 C 0.104 3.896 16 H 0.036 0.964 17 C 0.023 3.977 18 C -0.124 4.124 19 C 0.064 3.936 20 N -0.518 5.518 21 C 0.077 3.923 22 C -0.184 4.184 23 H 0.028 0.972 24 H 0.058 0.942 25 H 0.085 0.915 26 H 0.046 0.954 27 H 0.090 0.910 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.256 0.744 31 H 0.133 0.867 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.851 1.905 4.138 9.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.238 5.238 3 C -0.085 4.085 4 C -0.156 4.156 5 C 0.012 3.988 6 H 0.056 0.944 7 C -0.515 4.515 8 H 0.072 0.928 9 C -0.172 4.172 10 N -0.565 5.565 11 Si 0.748 3.252 12 H -0.186 1.186 13 H -0.222 1.222 14 H -0.208 1.208 15 C -0.004 4.004 16 H 0.054 0.946 17 C 0.015 3.985 18 C -0.144 4.144 19 C -0.092 4.092 20 N -0.228 5.228 21 C -0.080 4.080 22 C -0.205 4.205 23 H 0.046 0.954 24 H 0.077 0.923 25 H 0.103 0.897 26 H 0.065 0.935 27 H 0.108 0.892 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.151 0.849 32 H 0.183 0.817 33 H 0.185 0.815 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.594 0.667 4.544 9.744 hybrid contribution 0.783 0.660 -0.908 1.369 sum -7.810 1.327 3.636 8.717 Atomic orbital electron populations 1.22515 0.87608 1.01756 1.01255 1.65166 1.08319 1.15698 1.34583 1.23047 0.94996 0.89183 1.01241 1.22517 0.95995 0.97712 0.99401 1.19698 0.90011 0.92519 0.96585 0.94429 1.21135 1.13615 1.22248 0.94487 0.92822 1.25403 0.98819 0.97893 0.95089 1.69977 1.36525 1.44818 1.05137 0.86049 0.80031 0.79607 0.79500 1.18593 1.22216 1.20842 1.21795 0.98198 0.90316 0.90130 0.94609 1.19863 0.90506 0.95243 0.92928 1.21846 0.98439 0.94954 0.99161 1.22943 0.97400 0.91564 0.97244 1.67559 1.13661 1.41669 0.99940 1.22798 0.96874 0.92554 0.95741 1.22009 1.03724 0.95517 0.99241 0.95387 0.92305 0.89679 0.93539 0.89199 0.92811 0.92454 0.93440 0.84942 0.81688 0.81544 0.85545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.41 127.69 1.20 1.67 16 2 N -0.51 -17.51 4.55 -887.03 -4.04 -21.55 16 3 C 0.04 1.35 6.48 86.45 0.56 1.91 16 4 C -0.12 -4.57 6.66 31.60 0.21 -4.36 16 5 C 0.03 1.46 3.24 -10.54 -0.03 1.42 16 6 H 0.04 2.00 7.00 -2.39 -0.02 1.98 16 7 C -0.48 -24.38 5.66 25.60 0.14 -24.24 16 8 H 0.05 2.79 6.89 -2.91 -0.02 2.77 16 9 C 0.03 1.41 5.46 84.66 0.46 1.88 16 10 N -0.92 -52.86 12.64 21.45 0.27 -52.59 16 11 Si 0.92 44.38 29.54 68.60 2.03 46.41 16 12 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 13 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 14 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 15 C 0.10 4.18 2.43 44.32 0.11 4.29 16 16 H 0.04 1.42 7.85 -2.39 -0.02 1.40 16 17 C 0.02 0.95 3.94 -19.67 -0.08 0.87 16 18 C -0.12 -4.94 7.62 22.36 0.17 -4.77 16 19 C 0.06 2.42 11.18 84.68 0.95 3.37 16 20 N -0.52 -20.51 10.36 -195.84 -2.03 -22.54 16 21 C 0.08 2.91 11.18 84.68 0.95 3.86 16 22 C -0.18 -7.32 9.81 22.36 0.22 -7.10 16 23 H 0.03 0.72 7.97 -2.38 -0.02 0.70 16 24 H 0.06 1.65 8.04 -2.39 -0.02 1.63 16 25 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.05 1.32 7.97 -2.39 -0.02 1.30 16 27 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.06 2.31 7.71 -2.39 -0.02 2.29 16 30 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 31 H 0.13 5.24 7.29 -2.91 -0.02 5.22 16 32 H 0.17 5.21 8.06 -2.91 -0.02 5.19 16 33 H 0.17 5.16 8.06 -2.91 -0.02 5.14 16 34 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -59.66 279.14 2.16 -57.50 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 1.07 Total: 13.96 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 4.86 Total: -21.20 kcal Atomic # 7 Polarization: -90.88 SS G_CDS: -5.80 Total: -96.67 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -59.66 2.16 -57.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260101965.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.390 kcal (2) G-P(sol) polarization free energy of solvation -59.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds