Wall clock time and date at job start Mon Mar 30 2020 03:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.48531 * 110.99857 * 2 1 4 4 C 1.54937 * 103.37331 * 159.63431 * 3 2 1 5 5 C 1.54781 * 102.83798 * 322.79651 * 4 3 2 6 6 H 1.09000 * 110.47752 * 140.76922 * 5 4 3 7 7 C 1.50704 * 110.15054 * 262.85045 * 5 4 3 8 8 H 1.08000 * 119.99901 * 115.71685 * 7 5 4 9 9 C 1.37875 * 120.00066 * 295.70972 * 7 5 4 10 10 N 1.31512 * 120.00049 * 180.02562 * 9 7 5 11 11 Si 1.86796 * 119.99971 * 0.02562 * 9 7 5 12 12 H 1.48501 * 109.47031 * 90.00141 * 11 9 7 13 13 H 1.48497 * 109.47362 * 210.00170 * 11 9 7 14 14 H 1.48500 * 109.47401 * 330.00191 * 11 9 7 15 15 C 1.47901 * 110.99376 * 117.39504 * 2 1 3 16 16 H 1.09004 * 109.92027 * 333.50230 * 15 2 1 17 17 C 1.50697 * 109.92027 * 94.60573 * 15 2 1 18 18 C 1.38652 * 120.78763 * 38.26665 * 17 15 2 19 19 C 1.38200 * 119.15946 * 179.80088 * 18 17 15 20 20 N 1.31866 * 120.76886 * 0.48380 * 19 18 17 21 21 C 1.31873 * 121.72406 * 359.73996 * 20 19 18 22 22 C 1.38206 * 120.76312 * 0.02562 * 21 20 19 23 23 H 1.09002 * 109.46639 * 59.87861 * 1 2 3 24 24 H 1.09004 * 109.47033 * 179.87399 * 1 2 3 25 25 H 1.08992 * 109.47304 * 299.88140 * 1 2 3 26 26 H 1.09002 * 110.66657 * 278.15130 * 3 2 1 27 27 H 1.09001 * 110.67154 * 41.11809 * 3 2 1 28 28 H 1.08996 * 110.72800 * 81.02988 * 4 3 2 29 29 H 1.09005 * 110.72355 * 204.31010 * 4 3 2 30 30 H 0.97000 * 120.00100 * 180.02562 * 10 9 7 31 31 H 1.08000 * 120.41939 * 359.97438 * 18 17 15 32 32 H 1.08005 * 119.61381 * 180.24392 * 19 18 17 33 33 H 1.07998 * 119.61824 * 180.02562 * 21 20 19 34 34 H 1.08006 * 120.41915 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4490 1.2148 0.5246 5 6 3.2982 0.1054 1.5932 6 1 4.1466 -0.5779 1.5559 7 6 3.1811 0.7183 2.9650 8 1 2.2708 0.5989 3.5338 9 6 4.2360 1.4313 3.4938 10 7 4.1340 1.9658 4.6911 11 14 5.8102 1.6382 2.5097 12 1 5.7181 2.8673 1.6814 13 1 6.9632 1.7524 3.4385 14 1 6.0006 0.4595 1.6268 15 6 1.9990 -0.6354 1.2260 16 1 1.2757 -0.5401 2.0360 17 6 2.2891 -2.0910 0.9656 18 6 2.8212 -2.5028 -0.2468 19 6 3.0780 -3.8457 -0.4480 20 7 2.8142 -4.7314 0.4927 21 6 2.3039 -4.3765 1.6558 22 6 2.0251 -3.0510 1.9305 23 1 -0.3633 0.5157 -0.8889 24 1 -0.3633 -1.0277 -0.0023 25 1 -0.3633 0.5119 0.8910 26 1 2.0042 1.7976 -1.0096 27 1 1.4219 2.0212 0.6707 28 1 4.1134 0.8898 -0.2760 29 1 3.8089 2.1405 0.9739 30 1 4.8760 2.4677 5.0630 31 1 3.0348 -1.7829 -1.0229 32 1 3.4961 -4.1741 -1.3881 33 1 2.1015 -5.1303 2.4022 34 1 1.6069 -2.7666 2.8848 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260101988.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:15 Heat of formation + Delta-G solvation = 22.148359 kcal Electronic energy + Delta-G solvation = -16448.244605 eV Core-core repulsion = 13959.062781 eV Total energy + Delta-G solvation = -2489.181825 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.28883 -39.62620 -35.13187 -33.89455 -32.89902 -32.00071 -29.64136 -27.66452 -25.32930 -24.34130 -23.69900 -22.07757 -20.97700 -18.83733 -17.70192 -17.27189 -16.79357 -16.38857 -15.82159 -15.62857 -15.22410 -14.66571 -14.60216 -14.50974 -14.33465 -13.88314 -13.13227 -12.94095 -12.60580 -12.56211 -12.40123 -12.22285 -12.13773 -11.73639 -11.62827 -11.07086 -10.79560 -10.37229 -10.23872 -9.96165 -9.45501 -8.33450 -6.37733 0.32171 0.40754 1.29849 1.35153 1.44760 2.30534 2.92677 3.00304 3.09586 3.67257 3.82662 3.94256 4.05515 4.15880 4.28659 4.34616 4.39272 4.48345 4.61157 4.66268 4.76173 4.82546 4.95624 4.97739 5.00145 5.12968 5.21021 5.23032 5.44399 5.52132 5.60830 5.87978 5.92016 6.14203 6.24850 6.67222 7.09725 7.27388 8.82623 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.023467 B = 0.009831 C = 0.008464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.899487 B = 2847.543034 C = 3307.415512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.512 5.512 3 C 0.051 3.949 4 C -0.133 4.133 5 C 0.019 3.981 6 H 0.026 0.974 7 C -0.513 4.513 8 H 0.031 0.969 9 C 0.018 3.982 10 N -0.946 5.946 11 Si 0.937 3.063 12 H -0.257 1.257 13 H -0.295 1.295 14 H -0.248 1.248 15 C 0.119 3.881 16 H 0.041 0.959 17 C -0.026 4.026 18 C -0.148 4.148 19 C 0.087 3.913 20 N -0.512 5.512 21 C 0.091 3.909 22 C -0.183 4.183 23 H 0.090 0.910 24 H 0.066 0.934 25 H 0.018 0.982 26 H 0.104 0.896 27 H 0.033 0.967 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.266 0.734 31 H 0.146 0.854 32 H 0.181 0.819 33 H 0.177 0.823 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.693 -6.369 -11.975 14.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.236 5.236 3 C -0.077 4.077 4 C -0.171 4.171 5 C -0.001 4.001 6 H 0.044 0.956 7 C -0.551 4.551 8 H 0.050 0.950 9 C -0.180 4.180 10 N -0.586 5.586 11 Si 0.762 3.238 12 H -0.182 1.182 13 H -0.223 1.223 14 H -0.172 1.172 15 C 0.011 3.989 16 H 0.059 0.941 17 C -0.035 4.035 18 C -0.168 4.168 19 C -0.069 4.069 20 N -0.221 5.221 21 C -0.065 4.065 22 C -0.203 4.203 23 H 0.109 0.891 24 H 0.085 0.915 25 H 0.036 0.964 26 H 0.122 0.878 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.164 0.836 32 H 0.198 0.802 33 H 0.194 0.806 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.303 -7.429 -12.478 14.893 hybrid contribution 0.124 1.832 1.489 2.364 sum -3.179 -5.597 -10.989 12.735 Atomic orbital electron populations 1.22523 0.87162 1.02073 1.01187 1.64639 1.08756 1.14963 1.35213 1.23079 0.94301 0.89281 1.01002 1.22893 0.97215 0.99023 0.98004 1.19915 0.93288 0.93425 0.93465 0.95609 1.21236 1.00566 1.32716 1.00568 0.95046 1.25797 1.01869 0.94690 0.95641 1.70038 1.33609 1.36771 1.18210 0.85955 0.78579 0.80373 0.78880 1.18233 1.22250 1.17176 1.21215 0.96835 0.90208 0.90685 0.94109 1.20360 0.94272 0.94738 0.94133 1.22097 0.99353 0.97656 0.97707 1.23169 0.96026 0.89103 0.98626 1.67685 1.12818 1.39301 1.02331 1.22983 0.94512 0.94579 0.94470 1.22194 1.03033 0.94608 1.00461 0.89141 0.91470 0.96353 0.87814 0.94844 0.90995 0.92740 0.92499 0.83610 0.80169 0.80622 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.41 127.69 1.20 1.73 16 2 N -0.51 -16.77 4.48 -888.41 -3.98 -20.75 16 3 C 0.05 1.69 6.55 86.65 0.57 2.26 16 4 C -0.13 -5.21 5.14 31.86 0.16 -5.05 16 5 C 0.02 0.84 2.08 -10.59 -0.02 0.82 16 6 H 0.03 1.22 6.63 -2.39 -0.02 1.21 16 7 C -0.51 -28.43 9.06 25.60 0.23 -28.20 16 8 H 0.03 1.94 7.59 -2.91 -0.02 1.92 16 9 C 0.02 1.00 5.36 84.65 0.45 1.46 16 10 N -0.95 -58.19 13.96 21.45 0.30 -57.89 16 11 Si 0.94 43.58 24.84 68.60 1.70 45.29 16 12 H -0.26 -11.17 6.97 99.48 0.69 -10.48 16 13 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 14 H -0.25 -10.87 6.49 99.48 0.65 -10.23 16 15 C 0.12 4.63 2.35 44.31 0.10 4.73 16 16 H 0.04 1.77 6.85 -2.38 -0.02 1.75 16 17 C -0.03 -0.92 4.79 -19.67 -0.09 -1.02 16 18 C -0.15 -4.54 9.43 22.36 0.21 -4.33 16 19 C 0.09 2.41 11.18 84.68 0.95 3.36 16 20 N -0.51 -15.55 10.36 -195.84 -2.03 -17.58 16 21 C 0.09 2.67 11.18 84.68 0.95 3.62 16 22 C -0.18 -6.05 9.79 22.36 0.22 -5.83 16 23 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.02 0.54 7.99 -2.39 -0.02 0.52 16 26 H 0.10 2.77 8.14 -2.39 -0.02 2.76 16 27 H 0.03 1.21 8.00 -2.39 -0.02 1.19 16 28 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.05 2.31 5.45 -2.38 -0.01 2.30 16 30 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 31 H 0.15 4.16 7.77 -2.91 -0.02 4.14 16 32 H 0.18 3.68 8.06 -2.91 -0.02 3.66 16 33 H 0.18 4.02 8.06 -2.91 -0.02 4.00 16 34 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -64.68 275.86 1.92 -62.75 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 1.00 Total: 14.64 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 4.93 Total: -26.47 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -5.71 Total: -96.22 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.70 Total: 45.29 kcal Total: -64.68 1.92 -62.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260101988.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.901 kcal (2) G-P(sol) polarization free energy of solvation -64.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds