Wall clock time and date at job start Mon Mar 30 2020 03:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36866 * 120.00138 * 2 1 4 4 H 1.07991 * 120.00413 * 202.09265 * 3 2 1 5 5 C 1.38837 * 119.99907 * 22.09467 * 3 2 1 6 6 N 1.31563 * 120.00007 * 11.62215 * 5 3 2 7 7 Si 1.86805 * 120.00063 * 191.62013 * 5 3 2 8 8 H 1.48506 * 109.46748 * 90.00389 * 7 5 3 9 9 H 1.48501 * 109.47233 * 209.99839 * 7 5 3 10 10 H 1.48496 * 109.46962 * 330.00059 * 7 5 3 11 11 C 1.38967 * 119.99846 * 180.02562 * 2 1 3 12 12 C 1.39391 * 120.66205 * 90.00151 * 11 2 1 13 13 C 1.37899 * 118.72539 * 180.17543 * 12 11 2 14 14 N 1.31651 * 120.70806 * 359.57779 * 13 12 11 15 15 C 1.32817 * 122.63530 * 0.61295 * 14 13 12 16 16 C 1.37333 * 120.14323 * 359.48524 * 15 14 13 17 17 C 1.50485 * 122.91173 * 180.45693 * 16 15 14 18 18 C 1.52769 * 110.56891 * 342.51748 * 17 16 15 19 19 C 1.53333 * 108.33880 * 50.76482 * 18 17 16 20 20 C 1.50744 * 117.52411 * 179.31953 * 15 14 13 21 21 H 1.09001 * 109.47401 * 274.73579 * 1 2 3 22 22 H 1.08997 * 109.46928 * 34.73525 * 1 2 3 23 23 H 1.09001 * 109.47081 * 154.73728 * 1 2 3 24 24 H 0.96999 * 119.99916 * 180.02562 * 6 5 3 25 25 H 1.08002 * 120.63845 * 359.90109 * 12 11 2 26 26 H 1.07998 * 119.64554 * 179.84764 * 13 12 11 27 27 H 1.08998 * 109.25529 * 102.80247 * 17 16 15 28 28 H 1.09006 * 109.25265 * 222.24158 * 17 16 15 29 29 H 1.09000 * 109.68457 * 170.47037 * 18 17 16 30 30 H 1.08999 * 109.69699 * 291.04915 * 18 17 16 31 31 H 1.08998 * 109.67280 * 49.95318 * 19 18 17 32 32 H 1.09003 * 109.66822 * 170.48066 * 19 18 17 33 33 H 1.08996 * 109.25241 * 41.98020 * 20 15 14 34 34 H 1.08994 * 109.22455 * 282.52390 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.1698 1.2197 -0.3517 5 6 1.5317 2.3435 0.4523 6 7 0.3828 2.2706 1.0891 7 14 2.3319 4.0054 0.1566 8 1 1.8618 4.5575 -1.1394 9 1 1.9621 4.9351 1.2539 10 1 3.8077 3.8446 0.1202 11 6 2.1598 -1.2035 -0.0005 12 6 2.5153 -1.8186 -1.1998 13 6 3.2011 -3.0140 -1.1538 14 7 3.5222 -3.5609 -0.0001 15 6 3.2014 -3.0127 1.1664 16 6 2.5166 -1.8229 1.2041 17 6 2.1306 -1.1420 2.4894 18 6 2.2045 -2.1219 3.6591 19 6 3.5735 -2.8117 3.6249 20 6 3.6133 -3.7459 2.4174 21 1 -0.3634 0.0848 1.0241 22 1 -0.3633 0.8445 -0.5855 23 1 -0.3633 -0.9294 -0.4386 24 1 -0.0490 3.0798 1.4047 25 1 2.2546 -1.3698 -2.1470 26 1 3.4817 -3.5047 -2.0740 27 1 2.8104 -0.3102 2.6738 28 1 1.1128 -0.7615 2.4030 29 1 2.0889 -1.5816 4.5987 30 1 1.4151 -2.8676 3.5641 31 1 4.3599 -2.0622 3.5352 32 1 3.7172 -3.3874 4.5393 33 1 4.6261 -4.1289 2.2926 34 1 2.9318 -4.5798 2.5855 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260111583.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:30 Heat of formation + Delta-G solvation = 43.204937 kcal Electronic energy + Delta-G solvation = -16544.425071 eV Core-core repulsion = 14056.156328 eV Total energy + Delta-G solvation = -2488.268743 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.95011 -36.15787 -35.79879 -32.24535 -30.32228 -29.83602 -28.66509 -26.04172 -24.14222 -22.92366 -22.57804 -20.39098 -19.22415 -17.04101 -16.13837 -15.73859 -15.05851 -14.50955 -13.84520 -13.55868 -13.47568 -13.25182 -13.11729 -12.57624 -12.46711 -12.15608 -11.46037 -11.28728 -11.03723 -10.97683 -10.68248 -10.48901 -10.32539 -10.22782 -10.14543 -10.00344 -8.79723 -8.69997 -8.40152 -8.01591 -7.07141 -5.89573 -3.40257 1.86370 2.07889 3.30525 3.37237 3.38622 4.34882 4.48114 4.76003 5.08897 5.26198 5.26898 5.33571 5.43215 5.60318 5.68778 5.85623 5.94366 6.02483 6.14347 6.20998 6.28266 6.38678 6.43963 6.55450 6.60161 6.67627 6.79887 7.02020 7.20587 7.39353 7.41680 7.60995 7.70237 8.29553 8.67203 9.05995 9.74004 10.13493 11.15183 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.027509 B = 0.009182 C = 0.008018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.603669 B = 3048.803251 C = 3491.142221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.166 3.834 2 N -0.567 5.567 3 C -0.260 4.260 4 H 0.070 0.930 5 C 0.012 3.988 6 N -0.901 5.901 7 Si 0.909 3.091 8 H -0.285 1.285 9 H -0.289 1.289 10 H -0.278 1.278 11 C 0.252 3.748 12 C -0.199 4.199 13 C 0.093 3.907 14 N -0.514 5.514 15 C 0.118 3.882 16 C -0.137 4.137 17 C -0.060 4.060 18 C -0.120 4.120 19 C -0.118 4.118 20 C -0.060 4.060 21 H 0.037 0.963 22 H 0.051 0.949 23 H -0.001 1.001 24 H 0.256 0.744 25 H 0.125 0.875 26 H 0.143 0.857 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.853 -8.198 2.081 8.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.286 5.286 3 C -0.388 4.388 4 H 0.088 0.912 5 C -0.187 4.187 6 N -0.545 5.545 7 Si 0.739 3.261 8 H -0.212 1.212 9 H -0.215 1.215 10 H -0.203 1.203 11 C 0.149 3.851 12 C -0.222 4.222 13 C -0.066 4.066 14 N -0.224 5.224 15 C -0.017 4.017 16 C -0.142 4.142 17 C -0.098 4.098 18 C -0.158 4.158 19 C -0.156 4.156 20 C -0.098 4.098 21 H 0.056 0.944 22 H 0.070 0.930 23 H 0.018 0.982 24 H 0.066 0.934 25 H 0.143 0.857 26 H 0.160 0.840 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.154 -8.784 2.162 9.580 hybrid contribution -0.099 1.862 -0.336 1.895 sum 3.055 -6.922 1.825 7.783 Atomic orbital electron populations 1.20883 0.80720 0.96084 1.00038 1.41339 1.02240 0.99138 1.85904 1.19098 0.98059 0.84120 1.37525 0.91194 1.25020 0.97491 0.98587 0.97627 1.70039 1.17575 1.27487 1.39374 0.86182 0.78948 0.83479 0.77517 1.21219 1.21491 1.20342 1.18074 0.89425 0.87091 0.90491 1.22754 1.02115 0.97511 0.99814 1.22264 0.95938 0.93105 0.95318 1.67393 1.21694 1.35250 0.98033 1.20787 0.95596 0.92401 0.92963 1.21363 0.99992 0.95362 0.97505 1.20147 1.03484 0.96588 0.89569 1.21613 0.96726 0.98700 0.98729 1.21560 0.98336 0.98712 0.96981 1.20232 1.01688 0.97332 0.90522 0.94431 0.92982 0.98207 0.93391 0.85659 0.83989 0.90681 0.89717 0.91855 0.92261 0.91688 0.91757 0.90672 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.00 8.63 59.85 0.52 4.52 16 2 N -0.57 -14.09 2.09 -120.19 -0.25 -14.34 16 3 C -0.26 -6.98 9.65 -15.08 -0.15 -7.12 16 4 H 0.07 1.90 7.86 -52.49 -0.41 1.49 16 5 C 0.01 0.33 5.13 -17.44 -0.09 0.24 16 6 N -0.90 -24.82 10.58 55.49 0.59 -24.23 16 7 Si 0.91 21.27 29.57 -169.99 -5.03 16.24 16 8 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 9 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 11 C 0.25 5.67 5.02 -83.51 -0.42 5.25 16 12 C -0.20 -3.98 10.07 -39.28 -0.40 -4.37 16 13 C 0.09 1.67 11.18 -17.75 -0.20 1.47 16 14 N -0.51 -9.78 10.18 -9.60 -0.10 -9.87 16 15 C 0.12 2.22 6.62 -82.47 -0.55 1.67 16 16 C -0.14 -2.85 5.76 -104.37 -0.60 -3.45 16 17 C -0.06 -1.19 5.28 -28.11 -0.15 -1.34 16 18 C -0.12 -1.85 5.99 -26.68 -0.16 -2.01 16 19 C -0.12 -1.63 5.97 -26.70 -0.16 -1.79 16 20 C -0.06 -0.90 5.91 -28.01 -0.17 -1.06 16 21 H 0.04 0.95 6.73 -51.93 -0.35 0.60 16 22 H 0.05 1.33 7.21 -51.93 -0.37 0.95 16 23 H 0.00 -0.01 8.01 -51.93 -0.42 -0.43 16 24 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 25 H 0.13 2.37 8.06 -52.49 -0.42 1.95 16 26 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 27 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 28 H 0.08 1.89 6.80 -51.93 -0.35 1.54 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 31 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 276.88 15.07 4.17 4.17 Total: -1.00 -28.35 276.88 -7.97 -36.32 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -4.84 Total: -0.28 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -2.51 Total: -8.00 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.24 Total: -48.45 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.35 -7.97 -36.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260111583.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.522 kcal (2) G-P(sol) polarization free energy of solvation -28.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds