Wall clock time and date at job start Mon Mar 30 2020 03:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36866 * 120.00138 * 2 1 4 4 H 1.07991 * 120.00413 * 202.09265 * 3 2 1 5 5 C 1.38837 * 119.99907 * 22.09467 * 3 2 1 6 6 N 1.31563 * 120.00007 * 11.62215 * 5 3 2 7 7 Si 1.86805 * 120.00063 * 191.62013 * 5 3 2 8 8 H 1.48506 * 109.46748 * 90.00389 * 7 5 3 9 9 H 1.48501 * 109.47233 * 209.99839 * 7 5 3 10 10 H 1.48496 * 109.46962 * 330.00059 * 7 5 3 11 11 C 1.38967 * 119.99846 * 180.02562 * 2 1 3 12 12 C 1.39391 * 120.66205 * 90.00151 * 11 2 1 13 13 C 1.37899 * 118.72539 * 180.17543 * 12 11 2 14 14 N 1.31651 * 120.70806 * 359.57779 * 13 12 11 15 15 C 1.32817 * 122.63530 * 0.61295 * 14 13 12 16 16 C 1.37333 * 120.14323 * 359.48524 * 15 14 13 17 17 C 1.50485 * 122.91173 * 180.45693 * 16 15 14 18 18 C 1.52769 * 110.56891 * 342.51748 * 17 16 15 19 19 C 1.53333 * 108.33880 * 50.76482 * 18 17 16 20 20 C 1.50744 * 117.52411 * 179.31953 * 15 14 13 21 21 H 1.09001 * 109.47401 * 274.73579 * 1 2 3 22 22 H 1.08997 * 109.46928 * 34.73525 * 1 2 3 23 23 H 1.09001 * 109.47081 * 154.73728 * 1 2 3 24 24 H 0.96999 * 119.99916 * 180.02562 * 6 5 3 25 25 H 1.08002 * 120.63845 * 359.90109 * 12 11 2 26 26 H 1.07998 * 119.64554 * 179.84764 * 13 12 11 27 27 H 1.08998 * 109.25529 * 102.80247 * 17 16 15 28 28 H 1.09006 * 109.25265 * 222.24158 * 17 16 15 29 29 H 1.09000 * 109.68457 * 170.47037 * 18 17 16 30 30 H 1.08999 * 109.69699 * 291.04915 * 18 17 16 31 31 H 1.08998 * 109.67280 * 49.95318 * 19 18 17 32 32 H 1.09003 * 109.66822 * 170.48066 * 19 18 17 33 33 H 1.08996 * 109.25241 * 41.98020 * 20 15 14 34 34 H 1.08994 * 109.22455 * 282.52390 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.1698 1.2197 -0.3517 5 6 1.5317 2.3435 0.4523 6 7 0.3828 2.2706 1.0891 7 14 2.3319 4.0054 0.1566 8 1 1.8618 4.5575 -1.1394 9 1 1.9621 4.9351 1.2539 10 1 3.8077 3.8446 0.1202 11 6 2.1598 -1.2035 -0.0005 12 6 2.5153 -1.8186 -1.1998 13 6 3.2011 -3.0140 -1.1538 14 7 3.5222 -3.5609 -0.0001 15 6 3.2014 -3.0127 1.1664 16 6 2.5166 -1.8229 1.2041 17 6 2.1306 -1.1420 2.4894 18 6 2.2045 -2.1219 3.6591 19 6 3.5735 -2.8117 3.6249 20 6 3.6133 -3.7459 2.4174 21 1 -0.3634 0.0848 1.0241 22 1 -0.3633 0.8445 -0.5855 23 1 -0.3633 -0.9294 -0.4386 24 1 -0.0490 3.0798 1.4047 25 1 2.2546 -1.3698 -2.1470 26 1 3.4817 -3.5047 -2.0740 27 1 2.8104 -0.3102 2.6738 28 1 1.1128 -0.7615 2.4030 29 1 2.0889 -1.5816 4.5987 30 1 1.4151 -2.8676 3.5641 31 1 4.3599 -2.0622 3.5352 32 1 3.7172 -3.3874 4.5393 33 1 4.6261 -4.1289 2.2926 34 1 2.9318 -4.5798 2.5855 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260111583.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:30 Heat of formation + Delta-G solvation = 28.432039 kcal Electronic energy + Delta-G solvation = -16545.065672 eV Core-core repulsion = 14056.156328 eV Total energy + Delta-G solvation = -2488.909344 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.46835 -37.82953 -37.29429 -34.08699 -32.01007 -31.25593 -30.20165 -28.06538 -25.84266 -24.47652 -23.97078 -22.06577 -20.59599 -18.95844 -17.78750 -17.41563 -16.44760 -16.30475 -15.55346 -15.04132 -14.91798 -14.83303 -14.67953 -14.27711 -14.03532 -13.52391 -13.14419 -12.92719 -12.86765 -12.60092 -12.57574 -12.20887 -12.08293 -11.72537 -11.61429 -11.39504 -10.76242 -10.29283 -10.02624 -9.53458 -9.05709 -7.94472 -5.47998 0.34688 0.46290 1.42994 1.44000 1.52686 2.42013 2.94635 3.22112 3.41512 3.44573 3.92084 4.05021 4.06665 4.20021 4.32011 4.44465 4.59970 4.67691 4.70234 4.81177 4.91763 4.94298 5.03563 5.11329 5.14721 5.22621 5.26055 5.46776 5.48275 5.53754 5.62210 5.81941 5.89817 6.28601 7.02073 7.16674 7.76855 8.14745 9.08879 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.027509 B = 0.009182 C = 0.008018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.603669 B = 3048.803251 C = 3491.142221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.576 5.576 3 C -0.270 4.270 4 H 0.061 0.939 5 C -0.033 4.033 6 N -0.925 5.925 7 Si 0.970 3.030 8 H -0.282 1.282 9 H -0.289 1.289 10 H -0.274 1.274 11 C 0.215 3.785 12 C -0.208 4.208 13 C 0.104 3.896 14 N -0.517 5.517 15 C 0.120 3.880 16 C -0.157 4.157 17 C -0.050 4.050 18 C -0.114 4.114 19 C -0.111 4.111 20 C -0.059 4.059 21 H 0.016 0.984 22 H 0.031 0.969 23 H 0.019 0.981 24 H 0.254 0.746 25 H 0.130 0.870 26 H 0.184 0.816 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.182 -9.909 2.333 11.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.296 5.296 3 C -0.398 4.398 4 H 0.078 0.922 5 C -0.230 4.230 6 N -0.569 5.569 7 Si 0.798 3.202 8 H -0.208 1.208 9 H -0.215 1.215 10 H -0.199 1.199 11 C 0.113 3.887 12 C -0.230 4.230 13 C -0.055 4.055 14 N -0.227 5.227 15 C -0.015 4.015 16 C -0.162 4.162 17 C -0.088 4.088 18 C -0.151 4.151 19 C -0.148 4.148 20 C -0.096 4.096 21 H 0.035 0.965 22 H 0.049 0.951 23 H 0.038 0.962 24 H 0.063 0.937 25 H 0.148 0.852 26 H 0.200 0.800 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.498 -10.521 2.407 11.693 hybrid contribution -0.493 2.304 -0.462 2.401 sum 4.005 -8.217 1.945 9.346 Atomic orbital electron populations 1.20597 0.80958 0.96042 0.98471 1.41337 1.02306 0.99729 1.86186 1.19206 0.97811 0.85437 1.37382 0.92152 1.25709 0.98137 1.01487 0.97651 1.70179 1.18634 1.27931 1.40205 0.85238 0.78206 0.79548 0.77235 1.20833 1.21479 1.19877 1.18471 0.90885 0.87089 0.92229 1.22829 1.02700 0.98356 0.99091 1.22845 0.93998 0.92032 0.96603 1.67570 1.21658 1.35155 0.98333 1.21387 0.93994 0.91527 0.94615 1.21443 1.01183 0.96540 0.97005 1.19983 1.00345 0.96909 0.91602 1.21586 0.98444 0.97999 0.97066 1.21551 0.96523 0.98530 0.98231 1.20379 1.02874 0.97543 0.88850 0.96526 0.95062 0.96206 0.93703 0.85161 0.79958 0.93580 0.93353 0.90569 0.91376 0.92626 0.87952 0.89127 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.18 8.63 127.77 1.10 10.28 16 2 N -0.58 -29.57 2.09 -534.16 -1.12 -30.69 16 3 C -0.27 -14.93 9.65 84.05 0.81 -14.12 16 4 H 0.06 3.38 7.86 -2.92 -0.02 3.36 16 5 C -0.03 -1.81 5.13 84.88 0.44 -1.37 16 6 N -0.92 -52.68 10.58 21.65 0.23 -52.45 16 7 Si 0.97 44.47 29.57 68.60 2.03 46.50 16 8 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 9 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 C 0.22 9.79 5.02 38.73 0.19 9.98 16 12 C -0.21 -8.13 10.07 22.47 0.23 -7.90 16 13 C 0.10 3.49 11.18 84.64 0.95 4.44 16 14 N -0.52 -18.30 10.18 -184.28 -1.88 -20.18 16 15 C 0.12 4.29 6.62 42.21 0.28 4.56 16 16 C -0.16 -6.52 5.76 -19.70 -0.11 -6.64 16 17 C -0.05 -2.05 5.28 29.70 0.16 -1.89 16 18 C -0.11 -3.33 5.99 30.63 0.18 -3.15 16 19 C -0.11 -2.71 5.97 30.61 0.18 -2.53 16 20 C -0.06 -1.56 5.91 29.77 0.18 -1.39 16 21 H 0.02 0.89 6.73 -2.39 -0.02 0.87 16 22 H 0.03 1.65 7.21 -2.39 -0.02 1.63 16 23 H 0.02 0.88 8.01 -2.39 -0.02 0.86 16 24 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 25 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 26 H 0.18 4.55 8.06 -2.91 -0.02 4.53 16 27 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.05 2.28 6.80 -2.38 -0.02 2.26 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.07 1.89 8.10 -2.39 -0.02 1.87 16 31 H 0.05 1.48 8.10 -2.39 -0.02 1.46 16 32 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -62.33 276.88 4.92 -57.41 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.08 Total: 9.12 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 4.58 Total: -9.72 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -2.76 Total: -103.31 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -62.33 4.92 -57.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260111583.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.839 kcal (2) G-P(sol) polarization free energy of solvation -62.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds