Wall clock time and date at job start Mon Mar 30 2020 03:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46908 * 110.99794 * 2 1 4 4 C 1.50692 * 109.47476 * 293.95516 * 3 2 1 5 5 H 1.08007 * 120.00027 * 359.97438 * 4 3 2 6 6 C 1.37870 * 120.00290 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00192 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00433 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.46958 * 89.99808 * 8 6 4 10 10 H 1.48494 * 109.47474 * 210.00492 * 8 6 4 11 11 H 1.48507 * 109.46959 * 330.00284 * 8 6 4 12 12 C 1.39169 * 111.00243 * 123.95471 * 2 1 3 13 13 C 1.39451 * 120.79761 * 296.25992 * 12 2 1 14 14 C 1.37871 * 118.88171 * 180.24562 * 13 12 2 15 15 N 1.31835 * 120.89435 * 359.79143 * 14 13 12 16 16 C 1.32423 * 122.22310 * 359.97438 * 15 14 13 17 17 C 1.37888 * 120.31023 * 359.97438 * 16 15 14 18 18 C 1.51216 * 110.01831 * 180.02562 * 17 16 15 19 19 C 1.54370 * 105.10129 * 17.11613 * 18 17 16 20 20 C 1.51498 * 130.07665 * 179.97438 * 16 15 14 21 21 H 1.08996 * 109.47170 * 296.03993 * 1 2 3 22 22 H 1.09003 * 109.46811 * 56.04439 * 1 2 3 23 23 H 1.09005 * 109.46728 * 176.04502 * 1 2 3 24 24 H 1.09003 * 109.46685 * 53.95759 * 3 2 1 25 25 H 1.09000 * 109.47023 * 173.95331 * 3 2 1 26 26 H 0.96990 * 120.00153 * 179.97438 * 7 6 4 27 27 H 1.07994 * 120.55839 * 359.97438 * 13 12 2 28 28 H 1.08005 * 119.55482 * 179.76261 * 14 13 12 29 29 H 1.09005 * 110.31381 * 136.02514 * 18 17 16 30 30 H 1.09001 * 110.31522 * 258.10633 * 18 17 16 31 31 H 1.09007 * 110.82906 * 91.97560 * 19 18 17 32 32 H 1.08993 * 110.83095 * 215.34784 * 19 18 17 33 33 H 1.08999 * 110.29768 * 43.89134 * 20 16 15 34 34 H 1.09004 * 110.37821 * 281.80565 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0473 -1.2983 5 1 1.0746 1.5114 -2.0488 6 6 2.0267 3.3496 -1.5283 7 7 2.7119 4.0020 -0.6148 8 14 1.5829 4.1870 -3.1381 9 1 0.2703 4.8668 -2.9969 10 1 2.6250 5.1885 -3.4788 11 1 1.5006 3.1712 -4.2183 12 6 1.9678 -0.7257 1.0777 13 6 1.7289 -0.3130 2.3881 14 6 2.2462 -1.0589 3.4259 15 7 2.9521 -2.1473 3.1911 16 6 3.1989 -2.5776 1.9634 17 6 2.7146 -1.8862 0.8731 18 6 3.1308 -2.5783 -0.4054 19 6 3.5499 -4.0003 0.0252 20 6 3.9787 -3.7881 1.4924 21 1 -0.3633 0.4511 0.9233 22 1 -0.3633 0.5740 -0.8525 23 1 -0.3633 -1.0253 -0.0709 24 1 1.5611 1.9274 0.8310 25 1 3.0797 1.3445 0.1083 26 1 2.9864 4.9181 -0.7768 27 1 1.1523 0.5782 2.5867 28 1 2.0711 -0.7471 4.4451 29 1 2.2925 -2.6250 -1.1006 30 1 3.9716 -2.0561 -0.8619 31 1 2.7066 -4.6883 -0.0364 32 1 4.3844 -4.3577 -0.5780 33 1 3.7203 -4.6610 2.0919 34 1 5.0500 -3.5951 1.5491 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260216690.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:08 Heat of formation + Delta-G solvation = 35.352385 kcal Electronic energy + Delta-G solvation = -16050.632501 eV Core-core repulsion = 13562.023246 eV Total energy + Delta-G solvation = -2488.609255 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.45177 -37.01197 -35.74737 -32.76668 -30.66638 -29.04974 -27.46743 -27.25320 -25.26105 -22.84042 -21.94431 -20.91493 -19.58594 -16.80381 -16.26324 -15.86832 -15.32584 -14.81678 -14.55536 -13.85285 -13.75582 -13.17810 -13.02644 -12.70902 -12.53821 -12.07768 -11.78832 -11.51306 -11.35566 -11.01711 -10.99448 -10.85281 -10.83753 -10.62023 -10.13580 -9.39773 -9.01697 -8.77322 -8.53415 -8.33035 -7.57456 -6.10989 -4.13715 1.49804 1.67312 3.26947 3.33508 3.37483 4.10921 4.24725 4.34390 4.64909 4.87269 5.06367 5.13701 5.24661 5.33395 5.43042 5.65412 5.78754 5.87377 5.93611 5.95290 6.06071 6.09886 6.15923 6.24560 6.35266 6.48648 6.58293 6.72829 6.98470 7.17866 7.23507 7.72771 7.91491 8.04419 8.34844 8.46318 8.92729 9.50791 10.99824 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.033685 B = 0.006784 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.021707 B = 4126.221242 C = 4466.970482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.512 5.512 3 C 0.200 3.800 4 C -0.512 4.512 5 H 0.066 0.934 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.170 3.830 13 C -0.206 4.206 14 C 0.103 3.897 15 N -0.496 5.496 16 C 0.110 3.890 17 C -0.131 4.131 18 C -0.068 4.068 19 C -0.120 4.120 20 C -0.065 4.065 21 H 0.019 0.981 22 H 0.083 0.917 23 H 0.047 0.953 24 H -0.002 1.002 25 H 0.030 0.970 26 H 0.263 0.737 27 H 0.132 0.868 28 H 0.151 0.849 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.562 -12.357 3.134 12.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.234 5.234 3 C 0.077 3.923 4 C -0.550 4.550 5 H 0.084 0.916 6 C -0.145 4.145 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.067 3.933 13 C -0.229 4.229 14 C -0.054 4.054 15 N -0.206 5.206 16 C -0.028 4.028 17 C -0.134 4.134 18 C -0.105 4.105 19 C -0.158 4.158 20 C -0.103 4.103 21 H 0.037 0.963 22 H 0.102 0.898 23 H 0.066 0.934 24 H 0.016 0.984 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.150 0.850 28 H 0.168 0.832 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.002 -12.846 3.421 13.293 hybrid contribution -0.818 1.770 -0.645 2.054 sum -0.820 -11.075 2.777 11.447 Atomic orbital electron populations 1.22252 0.86731 1.00094 1.01312 1.59778 1.07740 1.18421 1.37447 1.19811 0.95471 0.79781 0.97227 1.21103 1.35381 0.96974 1.01563 0.91605 1.24993 0.95102 0.97274 0.97130 1.69959 1.37939 1.11519 1.34144 0.86458 0.78043 0.79229 0.83477 1.20645 1.21169 1.19686 1.19073 0.92679 0.91804 0.89766 1.22742 1.03710 1.02124 0.94277 1.22322 0.93763 0.90286 0.98989 1.66829 1.15019 1.14889 1.23863 1.21742 0.96138 0.96758 0.88130 1.21296 0.99116 0.95497 0.97485 1.20783 1.01765 0.93366 0.94626 1.22337 1.01369 0.97213 0.94898 1.20916 0.99153 0.94313 0.95908 0.96285 0.89814 0.93410 0.98430 0.95183 0.92759 0.84995 0.83208 0.90144 0.89960 0.91069 0.90302 0.90322 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.83 9.20 60.07 0.55 1.38 16 2 N -0.51 -11.18 4.69 -180.12 -0.85 -12.03 16 3 C 0.20 5.20 4.32 -4.98 -0.02 5.18 16 4 C -0.51 -14.11 8.46 -34.45 -0.29 -14.40 16 5 H 0.07 1.78 7.12 -52.48 -0.37 1.41 16 6 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 8 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 C 0.17 3.39 4.69 -83.60 -0.39 3.00 16 13 C -0.21 -3.81 8.77 -39.26 -0.34 -4.15 16 14 C 0.10 1.73 11.17 -17.68 -0.20 1.53 16 15 N -0.50 -8.72 10.35 -9.28 -0.10 -8.82 16 16 C 0.11 1.84 7.31 -82.07 -0.60 1.24 16 17 C -0.13 -2.35 6.13 -104.02 -0.64 -2.99 16 18 C -0.07 -1.01 6.72 -26.91 -0.18 -1.20 16 19 C -0.12 -1.36 7.08 -25.32 -0.18 -1.54 16 20 C -0.06 -0.81 6.77 -26.79 -0.18 -1.00 16 21 H 0.02 0.35 7.40 -51.93 -0.38 -0.03 16 22 H 0.08 1.67 6.76 -51.93 -0.35 1.32 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.00 -0.06 7.56 -51.93 -0.39 -0.45 16 25 H 0.03 0.86 8.06 -51.93 -0.42 0.44 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 27 H 0.13 2.39 7.30 -52.49 -0.38 2.00 16 28 H 0.15 2.01 8.06 -52.48 -0.42 1.59 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 282.82 15.07 4.26 4.26 Total: -1.00 -30.55 282.82 -8.35 -38.90 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -4.82 Total: -1.46 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -2.57 Total: -11.45 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.20 Total: -46.50 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.55 -8.35 -38.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260216690.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.252 kcal (2) G-P(sol) polarization free energy of solvation -30.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds