Wall clock time and date at job start Mon Mar 30 2020 03:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46908 * 110.99794 * 2 1 4 4 C 1.50692 * 109.47476 * 293.95516 * 3 2 1 5 5 H 1.08007 * 120.00027 * 359.97438 * 4 3 2 6 6 C 1.37870 * 120.00290 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00192 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00433 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.46958 * 89.99808 * 8 6 4 10 10 H 1.48494 * 109.47474 * 210.00492 * 8 6 4 11 11 H 1.48507 * 109.46959 * 330.00284 * 8 6 4 12 12 C 1.39169 * 111.00243 * 123.95471 * 2 1 3 13 13 C 1.39451 * 120.79761 * 296.25992 * 12 2 1 14 14 C 1.37871 * 118.88171 * 180.24562 * 13 12 2 15 15 N 1.31835 * 120.89435 * 359.79143 * 14 13 12 16 16 C 1.32423 * 122.22310 * 359.97438 * 15 14 13 17 17 C 1.37888 * 120.31023 * 359.97438 * 16 15 14 18 18 C 1.51216 * 110.01831 * 180.02562 * 17 16 15 19 19 C 1.54370 * 105.10129 * 17.11613 * 18 17 16 20 20 C 1.51498 * 130.07665 * 179.97438 * 16 15 14 21 21 H 1.08996 * 109.47170 * 296.03993 * 1 2 3 22 22 H 1.09003 * 109.46811 * 56.04439 * 1 2 3 23 23 H 1.09005 * 109.46728 * 176.04502 * 1 2 3 24 24 H 1.09003 * 109.46685 * 53.95759 * 3 2 1 25 25 H 1.09000 * 109.47023 * 173.95331 * 3 2 1 26 26 H 0.96990 * 120.00153 * 179.97438 * 7 6 4 27 27 H 1.07994 * 120.55839 * 359.97438 * 13 12 2 28 28 H 1.08005 * 119.55482 * 179.76261 * 14 13 12 29 29 H 1.09005 * 110.31381 * 136.02514 * 18 17 16 30 30 H 1.09001 * 110.31522 * 258.10633 * 18 17 16 31 31 H 1.09007 * 110.82906 * 91.97560 * 19 18 17 32 32 H 1.08993 * 110.83095 * 215.34784 * 19 18 17 33 33 H 1.08999 * 110.29768 * 43.89134 * 20 16 15 34 34 H 1.09004 * 110.37821 * 281.80565 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0473 -1.2983 5 1 1.0746 1.5114 -2.0488 6 6 2.0267 3.3496 -1.5283 7 7 2.7119 4.0020 -0.6148 8 14 1.5829 4.1870 -3.1381 9 1 0.2703 4.8668 -2.9969 10 1 2.6250 5.1885 -3.4788 11 1 1.5006 3.1712 -4.2183 12 6 1.9678 -0.7257 1.0777 13 6 1.7289 -0.3130 2.3881 14 6 2.2462 -1.0589 3.4259 15 7 2.9521 -2.1473 3.1911 16 6 3.1989 -2.5776 1.9634 17 6 2.7146 -1.8862 0.8731 18 6 3.1308 -2.5783 -0.4054 19 6 3.5499 -4.0003 0.0252 20 6 3.9787 -3.7881 1.4924 21 1 -0.3633 0.4511 0.9233 22 1 -0.3633 0.5740 -0.8525 23 1 -0.3633 -1.0253 -0.0709 24 1 1.5611 1.9274 0.8310 25 1 3.0797 1.3445 0.1083 26 1 2.9864 4.9181 -0.7768 27 1 1.1523 0.5782 2.5867 28 1 2.0711 -0.7471 4.4451 29 1 2.2925 -2.6250 -1.1006 30 1 3.9716 -2.0561 -0.8619 31 1 2.7066 -4.6883 -0.0364 32 1 4.3844 -4.3577 -0.5780 33 1 3.7203 -4.6610 2.0919 34 1 5.0500 -3.5951 1.5491 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260216690.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:08 Heat of formation + Delta-G solvation = 16.349976 kcal Electronic energy + Delta-G solvation = -16051.456508 eV Core-core repulsion = 13562.023246 eV Total energy + Delta-G solvation = -2489.433261 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.80729 -38.59729 -36.98824 -34.85295 -32.19085 -30.29817 -29.31518 -28.56466 -26.95537 -24.58074 -23.28806 -22.29132 -20.95074 -18.72144 -17.72539 -17.43474 -16.73073 -16.51038 -15.94183 -15.49045 -15.32447 -14.79766 -14.33426 -14.06087 -13.99533 -13.66734 -13.30383 -12.94467 -12.88173 -12.71538 -12.63692 -12.42600 -12.12802 -12.00509 -11.80815 -11.45204 -10.69153 -10.38589 -10.27914 -9.63488 -9.34340 -8.26032 -6.37681 0.13413 0.22997 1.40318 1.41840 1.53630 2.36822 2.75088 3.04627 3.06835 3.09457 3.65651 3.90476 4.08466 4.12810 4.22501 4.26813 4.44277 4.53748 4.68108 4.79339 4.87126 4.89793 4.93852 4.97150 5.02743 5.11162 5.18214 5.24971 5.35684 5.41294 5.60212 5.72817 5.98303 6.05413 6.62855 6.76513 6.99741 7.32481 8.85475 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.033685 B = 0.006784 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.021707 B = 4126.221242 C = 4466.970482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.514 5.514 3 C 0.221 3.779 4 C -0.527 4.527 5 H 0.069 0.931 6 C 0.003 3.997 7 N -0.935 5.935 8 Si 0.974 3.026 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.263 1.263 12 C 0.136 3.864 13 C -0.221 4.221 14 C 0.107 3.893 15 N -0.506 5.506 16 C 0.107 3.893 17 C -0.149 4.149 18 C -0.071 4.071 19 C -0.105 4.105 20 C -0.063 4.063 21 H 0.020 0.980 22 H 0.073 0.927 23 H 0.073 0.927 24 H -0.028 1.028 25 H -0.008 1.008 26 H 0.266 0.734 27 H 0.125 0.875 28 H 0.182 0.818 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.554 -14.060 2.490 14.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.235 5.235 3 C 0.097 3.903 4 C -0.565 4.565 5 H 0.087 0.913 6 C -0.195 4.195 7 N -0.575 5.575 8 Si 0.798 3.202 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.187 1.187 12 C 0.034 3.966 13 C -0.243 4.243 14 C -0.050 4.050 15 N -0.216 5.216 16 C -0.031 4.031 17 C -0.151 4.151 18 C -0.108 4.108 19 C -0.142 4.142 20 C -0.100 4.100 21 H 0.038 0.962 22 H 0.092 0.908 23 H 0.092 0.908 24 H -0.010 1.010 25 H 0.010 0.990 26 H 0.075 0.925 27 H 0.143 0.857 28 H 0.199 0.801 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.118 0.882 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.007 -14.576 2.784 14.839 hybrid contribution -0.805 2.251 -0.366 2.419 sum -0.812 -12.325 2.418 12.586 Atomic orbital electron populations 1.22257 0.85395 1.01526 1.00888 1.59644 1.09033 1.15863 1.38973 1.19355 0.93007 0.82055 0.95903 1.21415 1.35441 0.97538 1.02105 0.91271 1.25955 0.94724 0.97959 1.00898 1.70095 1.39009 1.11972 1.36385 0.85312 0.78006 0.78077 0.78819 1.19568 1.20812 1.18669 1.19327 0.94517 0.93017 0.89781 1.22764 1.04564 1.02482 0.94492 1.22784 0.92623 0.89626 0.99945 1.66972 1.15200 1.15052 1.24341 1.22535 0.95421 0.97679 0.87435 1.21701 0.98662 0.95163 0.99616 1.20883 1.01163 0.95538 0.93263 1.22347 1.02929 0.94748 0.94183 1.21100 0.99234 0.93020 0.96695 0.96165 0.90790 0.90840 1.01009 0.98950 0.92539 0.85658 0.80063 0.90694 0.90926 0.89604 0.87439 0.88221 0.88373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.79 9.20 127.69 1.18 2.97 16 2 N -0.51 -23.11 4.69 -723.77 -3.40 -26.51 16 3 C 0.22 12.05 4.32 85.55 0.37 12.42 16 4 C -0.53 -29.73 8.46 25.60 0.22 -29.52 16 5 H 0.07 3.77 7.12 -2.91 -0.02 3.75 16 6 C 0.00 0.17 5.46 84.65 0.46 0.63 16 7 N -0.93 -56.37 13.29 21.45 0.28 -56.08 16 8 Si 0.97 43.74 29.54 68.60 2.03 45.77 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 12 C 0.14 5.55 4.69 38.58 0.18 5.73 16 13 C -0.22 -8.35 8.77 22.48 0.20 -8.15 16 14 C 0.11 3.51 11.17 84.61 0.94 4.46 16 15 N -0.51 -17.10 10.35 -183.26 -1.90 -19.00 16 16 C 0.11 3.42 7.31 42.64 0.31 3.74 16 17 C -0.15 -5.29 6.13 -19.48 -0.12 -5.41 16 18 C -0.07 -2.04 6.72 30.48 0.20 -1.84 16 19 C -0.10 -2.01 7.08 31.51 0.22 -1.79 16 20 C -0.06 -1.37 6.77 30.55 0.21 -1.17 16 21 H 0.02 0.76 7.40 -2.39 -0.02 0.75 16 22 H 0.07 2.99 6.76 -2.39 -0.02 2.98 16 23 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 24 H -0.03 -1.62 7.56 -2.39 -0.02 -1.63 16 25 H -0.01 -0.46 8.06 -2.39 -0.02 -0.48 16 26 H 0.27 15.03 8.31 -92.72 -0.77 14.26 16 27 H 0.13 4.77 7.30 -2.91 -0.02 4.75 16 28 H 0.18 4.60 8.06 -2.91 -0.02 4.58 16 29 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 30 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.11 1.50 8.14 -2.39 -0.02 1.49 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.80 16 34 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -67.13 282.82 2.47 -64.66 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 1.08 Total: 9.08 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 4.37 Total: -17.93 kcal Atomic # 7 Polarization: -96.58 SS G_CDS: -5.01 Total: -101.58 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -67.13 2.47 -64.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260216690.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.008 kcal (2) G-P(sol) polarization free energy of solvation -67.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds