Wall clock time and date at job start Mon Mar 30 2020 02:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 110.06685 * 2 1 4 4 C 1.38238 * 119.61621 * 129.07411 * 3 2 1 5 5 C 1.38625 * 119.16169 * 179.97438 * 4 3 2 6 6 C 1.38677 * 118.41921 * 359.97438 * 5 4 3 7 7 C 1.38185 * 119.16488 * 359.97438 * 6 5 4 8 8 N 1.31847 * 119.62296 * 308.79875 * 3 2 1 9 9 N 1.47901 * 109.91735 * 121.21092 * 2 1 3 10 10 C 1.48533 * 105.82194 * 94.02430 * 9 2 1 11 11 C 1.54930 * 103.37856 * 39.12134 * 10 9 2 12 12 C 1.53999 * 109.91792 * 238.79676 * 2 1 3 13 13 H 1.08999 * 110.30842 * 0.89080 * 12 2 1 14 14 C 1.50698 * 110.31021 * 122.95485 * 12 2 1 15 15 H 1.08004 * 119.99679 * 5.02545 * 14 12 2 16 16 C 1.37873 * 120.00343 * 185.02569 * 14 12 2 17 17 N 1.31512 * 119.99750 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00133 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47583 * 89.99825 * 18 16 14 20 20 H 1.48508 * 109.47031 * 209.99884 * 18 16 14 21 21 H 1.48505 * 109.47209 * 329.99606 * 18 16 14 22 22 H 1.08997 * 109.47022 * 300.24611 * 1 2 3 23 23 H 1.09001 * 109.47252 * 60.24656 * 1 2 3 24 24 H 1.09002 * 109.47056 * 180.24553 * 1 2 3 25 25 H 1.07997 * 120.41808 * 359.95345 * 4 3 2 26 26 H 1.08000 * 120.79378 * 180.02562 * 5 4 3 27 27 H 1.08000 * 120.41537 * 180.02562 * 6 5 4 28 28 H 1.08002 * 119.61822 * 180.02562 * 7 6 5 29 29 H 1.00893 * 111.00126 * 333.50276 * 9 2 1 30 30 H 1.09007 * 110.66563 * 157.64566 * 10 9 2 31 31 H 1.09000 * 110.66173 * 280.59843 * 10 9 2 32 32 H 1.08998 * 110.72368 * 81.03169 * 11 10 9 33 33 H 1.09007 * 110.72456 * 204.31255 * 11 10 9 34 34 H 0.97005 * 120.00082 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0470 1.4155 0.0000 4 6 2.9930 1.7972 0.9330 5 6 3.4625 3.1015 0.9241 6 6 2.9612 3.9770 -0.0275 7 6 2.0175 3.5232 -0.9291 8 7 1.5961 2.2740 -0.8933 9 7 2.0338 -0.7206 1.1893 10 6 2.2661 -2.1194 0.7470 11 6 2.8518 -1.9524 -0.6775 12 6 2.0546 -0.7501 -1.2384 13 1 1.2225 -1.1012 -1.8487 14 6 2.9556 0.1451 -2.0494 15 1 3.2108 1.1287 -1.6835 16 6 3.4542 -0.2914 -3.2585 17 7 3.1438 -1.4893 -3.7038 18 14 4.5716 0.8181 -4.2634 19 1 5.9851 0.5786 -3.8763 20 1 4.3965 0.5198 -5.7076 21 1 4.2214 2.2380 -4.0052 22 1 -0.3633 0.5176 0.8878 23 1 -0.3634 0.5100 -0.8922 24 1 -0.3633 -1.0277 0.0044 25 1 3.3613 1.0884 1.6598 26 1 4.2017 3.4280 1.6406 27 1 3.3047 5.0002 -0.0639 28 1 1.6224 4.1987 -1.6736 29 1 1.3645 -0.6861 1.9434 30 1 2.9822 -2.6160 1.4018 31 1 1.3279 -2.6733 0.7148 32 1 3.9159 -1.7206 -0.6323 33 1 2.6760 -2.8475 -1.2743 34 1 3.4948 -1.7966 -4.5542 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260241652.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:54 Heat of formation + Delta-G solvation = 47.181767 kcal Electronic energy + Delta-G solvation = -16868.912501 eV Core-core repulsion = 14380.816207 eV Total energy + Delta-G solvation = -2488.096295 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.90219 -37.61863 -32.72853 -32.04997 -31.18271 -29.20016 -28.96729 -25.83039 -23.73376 -22.63530 -22.28381 -20.00228 -18.76172 -16.78385 -15.94302 -15.34922 -15.27891 -14.58048 -14.33115 -13.94798 -13.21816 -12.85255 -12.46430 -12.39829 -11.88638 -11.83955 -11.77888 -11.35326 -10.94667 -10.79340 -10.61998 -10.53687 -10.20983 -9.72370 -9.29465 -9.10496 -8.81190 -8.50854 -8.31058 -8.00538 -7.85872 -5.93875 -3.91242 1.92852 2.06130 3.35362 3.41618 3.47059 4.51972 4.59872 4.67284 5.30521 5.40729 5.42132 5.48380 5.74863 5.79369 5.86010 5.95299 6.06092 6.11553 6.16502 6.30803 6.47526 6.52942 6.58699 6.75136 6.80558 6.90773 7.12556 7.16872 7.40099 7.47728 7.60532 7.94823 7.98629 8.07390 8.48103 8.90446 9.06767 9.70623 11.17130 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.018391 B = 0.014744 C = 0.009727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.159649 B = 1898.647454 C = 2877.868991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.139 3.861 3 C 0.202 3.798 4 C -0.159 4.159 5 C -0.091 4.091 6 C -0.201 4.201 7 C 0.092 3.908 8 N -0.461 5.461 9 N -0.665 5.665 10 C 0.035 3.965 11 C -0.099 4.099 12 C 0.063 3.937 13 H 0.041 0.959 14 C -0.492 4.492 15 H 0.064 0.936 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.883 3.117 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.275 1.275 22 H 0.040 0.960 23 H 0.074 0.926 24 H 0.050 0.950 25 H 0.142 0.858 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.142 0.858 29 H 0.323 0.677 30 H 0.065 0.935 31 H 0.029 0.971 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.222 4.598 8.940 10.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.047 3.953 3 C 0.065 3.935 4 C -0.179 4.179 5 C -0.117 4.117 6 C -0.221 4.221 7 C -0.066 4.066 8 N -0.169 5.169 9 N -0.293 5.293 10 C -0.094 4.094 11 C -0.138 4.138 12 C 0.043 3.957 13 H 0.059 0.941 14 C -0.530 4.530 15 H 0.082 0.918 16 C -0.139 4.139 17 N -0.534 5.534 18 Si 0.712 3.288 19 H -0.210 1.210 20 H -0.214 1.214 21 H -0.200 1.200 22 H 0.059 0.941 23 H 0.093 0.907 24 H 0.069 0.931 25 H 0.159 0.841 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.160 0.840 29 H 0.137 0.863 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.113 4.428 8.150 9.513 hybrid contribution 0.539 0.566 -0.234 0.815 sum -1.574 4.994 7.916 9.491 Atomic orbital electron populations 1.22283 0.96014 1.00882 1.02043 1.20667 0.91917 0.89642 0.93030 1.20611 0.91249 0.93941 0.87692 1.21994 0.98512 0.95946 1.01438 1.21443 0.98429 0.93965 0.97830 1.21898 1.00971 1.00487 0.98774 1.22544 0.94690 0.92472 0.96928 1.67434 1.27216 1.01953 1.20316 1.62874 1.47180 1.11584 1.07624 1.23096 0.98501 0.88791 0.99020 1.22552 1.00364 0.99779 0.91091 1.19499 0.95507 0.91489 0.89187 0.94054 1.21298 1.27669 1.00812 1.03255 0.91779 1.24900 0.96584 0.94944 0.97483 1.69958 1.45241 1.17616 1.20613 0.86712 0.81129 0.81453 0.79512 1.20974 1.21369 1.19958 0.94106 0.90749 0.93132 0.84058 0.86173 0.86285 0.84028 0.86259 0.91623 0.95311 0.92072 0.92238 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 8.07 37.16 0.30 -2.52 16 2 C 0.14 2.87 1.05 -131.68 -0.14 2.73 16 3 C 0.20 4.26 3.46 -82.59 -0.29 3.98 16 4 C -0.16 -3.02 9.39 -39.44 -0.37 -3.39 16 5 C -0.09 -1.51 10.18 -39.28 -0.40 -1.91 16 6 C -0.20 -3.31 10.11 -39.44 -0.40 -3.71 16 7 C 0.09 1.71 11.17 -17.55 -0.20 1.51 16 8 N -0.46 -9.96 8.26 -9.47 -0.08 -10.04 16 9 N -0.66 -11.96 5.42 -97.63 -0.53 -12.49 16 10 C 0.03 0.63 7.53 -1.90 -0.01 0.62 16 11 C -0.10 -2.27 6.09 -24.78 -0.15 -2.42 16 12 C 0.06 1.54 2.42 -90.32 -0.22 1.33 16 13 H 0.04 1.13 7.68 -51.93 -0.40 0.73 16 14 C -0.49 -13.54 7.36 -34.44 -0.25 -13.79 16 15 H 0.06 1.80 4.86 -52.48 -0.25 1.54 16 16 C 0.06 1.74 5.37 -17.82 -0.10 1.65 16 17 N -0.89 -26.05 12.89 55.43 0.71 -25.34 16 18 Si 0.88 22.29 29.54 -169.99 -5.02 17.27 16 19 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 21 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 1.48 7.93 -51.93 -0.41 1.07 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.14 2.56 6.95 -52.49 -0.36 2.20 16 26 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 27 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 28 H 0.14 2.25 8.06 -52.49 -0.42 1.82 16 29 H 0.32 4.96 8.43 -39.30 -0.33 4.63 16 30 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 1.51 7.86 -51.93 -0.41 1.11 16 33 H 0.06 1.42 8.14 -51.92 -0.42 0.99 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 276.54 15.07 4.17 4.17 Total: -1.00 -30.04 276.54 -7.66 -37.70 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -4.69 Total: 4.67 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -2.22 Total: -15.94 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.11 Total: -47.86 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.04 -7.66 -37.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260241652.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.877 kcal (2) G-P(sol) polarization free energy of solvation -30.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds