Wall clock time and date at job start Mon Mar 30 2020 02:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 110.06685 * 2 1 4 4 C 1.38238 * 119.61621 * 129.07411 * 3 2 1 5 5 C 1.38625 * 119.16169 * 179.97438 * 4 3 2 6 6 C 1.38677 * 118.41921 * 359.97438 * 5 4 3 7 7 C 1.38185 * 119.16488 * 359.97438 * 6 5 4 8 8 N 1.31847 * 119.62296 * 308.79875 * 3 2 1 9 9 N 1.47901 * 109.91735 * 121.21092 * 2 1 3 10 10 C 1.48533 * 105.82194 * 94.02430 * 9 2 1 11 11 C 1.54930 * 103.37856 * 39.12134 * 10 9 2 12 12 C 1.53999 * 109.91792 * 238.79676 * 2 1 3 13 13 H 1.08999 * 110.30842 * 0.89080 * 12 2 1 14 14 C 1.50698 * 110.31021 * 122.95485 * 12 2 1 15 15 H 1.08004 * 119.99679 * 5.02545 * 14 12 2 16 16 C 1.37873 * 120.00343 * 185.02569 * 14 12 2 17 17 N 1.31512 * 119.99750 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00133 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47583 * 89.99825 * 18 16 14 20 20 H 1.48508 * 109.47031 * 209.99884 * 18 16 14 21 21 H 1.48505 * 109.47209 * 329.99606 * 18 16 14 22 22 H 1.08997 * 109.47022 * 300.24611 * 1 2 3 23 23 H 1.09001 * 109.47252 * 60.24656 * 1 2 3 24 24 H 1.09002 * 109.47056 * 180.24553 * 1 2 3 25 25 H 1.07997 * 120.41808 * 359.95345 * 4 3 2 26 26 H 1.08000 * 120.79378 * 180.02562 * 5 4 3 27 27 H 1.08000 * 120.41537 * 180.02562 * 6 5 4 28 28 H 1.08002 * 119.61822 * 180.02562 * 7 6 5 29 29 H 1.00893 * 111.00126 * 333.50276 * 9 2 1 30 30 H 1.09007 * 110.66563 * 157.64566 * 10 9 2 31 31 H 1.09000 * 110.66173 * 280.59843 * 10 9 2 32 32 H 1.08998 * 110.72368 * 81.03169 * 11 10 9 33 33 H 1.09007 * 110.72456 * 204.31255 * 11 10 9 34 34 H 0.97005 * 120.00082 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0470 1.4155 0.0000 4 6 2.9930 1.7972 0.9330 5 6 3.4625 3.1015 0.9241 6 6 2.9612 3.9770 -0.0275 7 6 2.0175 3.5232 -0.9291 8 7 1.5961 2.2740 -0.8933 9 7 2.0338 -0.7206 1.1893 10 6 2.2661 -2.1194 0.7470 11 6 2.8518 -1.9524 -0.6775 12 6 2.0546 -0.7501 -1.2384 13 1 1.2225 -1.1012 -1.8487 14 6 2.9556 0.1451 -2.0494 15 1 3.2108 1.1287 -1.6835 16 6 3.4542 -0.2914 -3.2585 17 7 3.1438 -1.4893 -3.7038 18 14 4.5716 0.8181 -4.2634 19 1 5.9851 0.5786 -3.8763 20 1 4.3965 0.5198 -5.7076 21 1 4.2214 2.2380 -4.0052 22 1 -0.3633 0.5176 0.8878 23 1 -0.3634 0.5100 -0.8922 24 1 -0.3633 -1.0277 0.0044 25 1 3.3613 1.0884 1.6598 26 1 4.2017 3.4280 1.6406 27 1 3.3047 5.0002 -0.0639 28 1 1.6224 4.1987 -1.6736 29 1 1.3645 -0.6861 1.9434 30 1 2.9822 -2.6160 1.4018 31 1 1.3279 -2.6733 0.7148 32 1 3.9159 -1.7206 -0.6323 33 1 2.6760 -2.8475 -1.2743 34 1 3.4948 -1.7966 -4.5542 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260241652.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:54 Heat of formation + Delta-G solvation = 27.784460 kcal Electronic energy + Delta-G solvation = -16869.753632 eV Core-core repulsion = 14380.816207 eV Total energy + Delta-G solvation = -2488.937425 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.38961 -39.16983 -34.77390 -33.48947 -32.65482 -31.01993 -30.44700 -27.59251 -25.50929 -24.04136 -23.82443 -21.70071 -20.39558 -18.60870 -17.61021 -16.89832 -16.69894 -16.39043 -16.01093 -15.39409 -14.84395 -14.51682 -14.06108 -13.80688 -13.72062 -13.44959 -13.28317 -12.91804 -12.77385 -12.58660 -12.44925 -12.28460 -11.88090 -11.59440 -11.12261 -10.85791 -10.46500 -10.40426 -10.02401 -9.46941 -9.30997 -8.09025 -6.09804 0.52649 0.69666 1.33392 1.34821 1.44281 2.43295 3.13844 3.21667 3.26869 3.89965 4.10451 4.19401 4.22265 4.33466 4.45879 4.52289 4.57173 4.67748 4.69846 4.79032 4.94875 5.05625 5.16719 5.18191 5.28210 5.37965 5.48984 5.53383 5.61715 5.71511 5.88356 6.09651 6.21141 6.41614 6.67344 6.94851 7.47337 7.53909 9.01840 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.018391 B = 0.014744 C = 0.009727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.159649 B = 1898.647454 C = 2877.868991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.142 3.858 3 C 0.173 3.827 4 C -0.170 4.170 5 C -0.088 4.088 6 C -0.191 4.191 7 C 0.070 3.930 8 N -0.499 5.499 9 N -0.657 5.657 10 C 0.048 3.952 11 C -0.095 4.095 12 C 0.055 3.945 13 H 0.003 0.997 14 C -0.491 4.491 15 H 0.061 0.939 16 C 0.009 3.991 17 N -0.925 5.925 18 Si 0.936 3.064 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.064 0.936 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.148 0.852 26 H 0.158 0.842 27 H 0.158 0.842 28 H 0.160 0.840 29 H 0.343 0.657 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.035 0.965 33 H 0.038 0.962 34 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.601 6.074 10.842 12.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.050 3.950 3 C 0.036 3.964 4 C -0.190 4.190 5 C -0.114 4.114 6 C -0.211 4.211 7 C -0.088 4.088 8 N -0.209 5.209 9 N -0.287 5.287 10 C -0.081 4.081 11 C -0.134 4.134 12 C 0.035 3.965 13 H 0.021 0.979 14 C -0.530 4.530 15 H 0.078 0.922 16 C -0.188 4.188 17 N -0.566 5.566 18 Si 0.763 3.237 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.199 1.199 22 H 0.083 0.917 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.165 0.835 26 H 0.176 0.824 27 H 0.176 0.824 28 H 0.177 0.823 29 H 0.160 0.840 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.497 5.912 10.071 11.773 hybrid contribution 0.333 0.183 -0.808 0.893 sum -1.164 6.095 9.263 11.149 Atomic orbital electron populations 1.22178 0.94796 1.01395 1.02028 1.20456 0.92898 0.89751 0.91911 1.20686 0.92772 0.93977 0.88941 1.22155 0.98206 0.97367 1.01241 1.21906 0.98383 0.92932 0.98205 1.22310 0.99296 1.02221 0.97248 1.23027 0.95575 0.91985 0.98174 1.67353 1.28698 1.03441 1.21379 1.62814 1.47782 1.10965 1.07117 1.22999 0.99576 0.89408 0.96091 1.22321 0.98780 0.98136 0.94149 1.19416 0.94086 0.92316 0.90634 0.97851 1.21629 1.27099 1.00883 1.03399 0.92154 1.25591 0.98242 0.96146 0.98836 1.70072 1.46673 1.18969 1.20923 0.85884 0.79704 0.79827 0.78303 1.20476 1.21133 1.19890 0.91706 0.93074 0.92330 0.83472 0.82439 0.82440 0.82252 0.84010 0.89061 0.93623 0.94563 0.94287 0.93575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 8.07 71.98 0.58 -4.69 16 2 C 0.14 5.78 1.05 2.92 0.00 5.78 16 3 C 0.17 7.15 3.46 42.55 0.15 7.30 16 4 C -0.17 -6.09 9.39 22.36 0.21 -5.88 16 5 C -0.09 -2.65 10.18 22.47 0.23 -2.42 16 6 C -0.19 -5.64 10.11 22.36 0.23 -5.42 16 7 C 0.07 2.49 11.17 84.67 0.95 3.44 16 8 N -0.50 -21.42 8.26 -183.88 -1.52 -22.94 16 9 N -0.66 -22.33 5.42 -462.79 -2.51 -24.84 16 10 C 0.05 1.66 7.53 86.65 0.65 2.31 16 11 C -0.10 -4.43 6.09 31.86 0.19 -4.23 16 12 C 0.05 2.78 2.42 -10.60 -0.03 2.76 16 13 H 0.00 0.19 7.68 -2.39 -0.02 0.17 16 14 C -0.49 -27.61 7.36 25.60 0.19 -27.42 16 15 H 0.06 3.41 4.86 -2.91 -0.01 3.40 16 16 C 0.01 0.52 5.37 84.65 0.45 0.97 16 17 N -0.93 -55.64 12.89 21.45 0.28 -55.36 16 18 Si 0.94 46.35 29.54 68.60 2.03 48.37 16 19 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 20 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 21 H -0.27 -13.39 7.11 99.48 0.71 -12.68 16 22 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 24 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.15 4.98 6.95 -2.91 -0.02 4.96 16 26 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 27 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 28 H 0.16 4.81 8.06 -2.91 -0.02 4.79 16 29 H 0.34 9.49 8.43 -89.70 -0.76 8.73 16 30 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 32 H 0.04 1.82 7.86 -2.39 -0.02 1.80 16 33 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 Total: -1.00 -66.66 276.54 2.42 -64.25 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.34 Total: 18.02 kcal Atomic # 6 Polarization: -31.30 SS G_CDS: 3.81 Total: -27.50 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -3.75 Total: -103.14 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.37 kcal Total: -66.66 2.42 -64.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260241652.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.030 kcal (2) G-P(sol) polarization free energy of solvation -66.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds